Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCB1	5243	genome.wustl.edu	37	7	87148753	87148753	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	87148753	87148753	C	G	SNP	ABCB1	NM_000927	human	genbank	57_37b	-1	reviewed	missense	c.2816	p.G939A	1.000	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ANKRD24	170961	genome.wustl.edu	37	19	4217300	4217300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4217300	4217300	G	A	SNP	ANKRD24	NM_133475	human	genbank	57_37b	+1	provisional	missense	c.2143	p.A715T	0.232	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
ASXL2	55252	genome.wustl.edu	37	2	25967231	25967231	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25967231	25967231	C	T	SNP	ASXL2	NM_018263	human	genbank	57_37b	-1	validated	missense	c.1975	p.D659N	1.000	NULL	NULL	-	no_errors
BCAR3	8412	genome.wustl.edu	37	1	94048116	94048116	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	94048116	94048116	C	G	SNP	BCAR3	NM_003567	human	genbank	57_37b	-1	reviewed	missense	c.1428	p.L476F	1.000	superfamily_Ras GEF	superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147	-	no_errors
C22orf30	253143	genome.wustl.edu	37	22	32112726	32112726	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	32112726	32112726	C	T	SNP	C22orf30	NM_173566	human	genbank	57_37b	-1	validated	missense	c.1099	p.G367S	0.000	NULL	NULL	-	no_errors
C5orf41	153222	genome.wustl.edu	37	5	172535710	172535710	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	172535710	172535710	G	C	SNP	C5orf41	NM_153607	human	genbank	57_37b	+1	validated	missense	c.1306	p.E436Q	1.000	NULL	PatternScan_BZIP_BASIC	-	no_errors
CR1	1378	genome.wustl.edu	37	1	207796386	207796386	+	Missense_Mutation	SNP	C	C	A	rs56226125	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207796386	207796386	C	A	SNP	CR1	NM_000651	human	genbank	57_37b	+1	reviewed	missense	c.7325	p.S2442Y	0.000	NULL	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	
DCDC5	196296	genome.wustl.edu	37	11	30937137	30937137	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	30937137	30937137	G	A	SNP	DCDC5	XM_002343054	human	genbank	57_37b	-1	model	nonsense	c.1168	p.R390*	0.001	NULL	superfamily_Doublecortin (DC),HMMSmart_SM00537,HMMPfam_DCX	-	no_errors
ELTD1	64123	genome.wustl.edu	37	1	79357327	79357327	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	79357327	79357327	C	T	SNP	ELTD1	NM_022159	human	genbank	57_37b	-1	validated	nonsense	c.1892	p.W631*	1.000	HMMPfam_7tm_2	HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,superfamily_SSF57196,PatternScan_ASX_HYDROXYL,PatternScan_EF_HAND_1,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
ENSG00000180574	0	genome.wustl.edu	37	12	10659202	10659202	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10659202	10659202	T	C	SNP	ENSG00000180574	ENST00000322446	human	ensembl	57_37b	+1	known	missense	c.701	p.V234A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_eIF2_C	-	no_errors
ENSG00000244969	0	genome.wustl.edu	37	9	139270606	139270606	+	RNA	SNP	T	T	C	rs35670379	byCluster;byFrequency;by1000genomes	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139270606	139270606	T	C	SNP	ENSG00000244969	ENST00000501155	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.016	-	-	-	
GALNT2	2590	genome.wustl.edu	37	1	230384985	230384985	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	230384985	230384985	G	A	SNP	GALNT2	NM_004481	human	genbank	57_37b	+1	reviewed	silent	c.873	p.R291	0.785	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin	-	no_errors
GPC5	2262	genome.wustl.edu	37	13	92345944	92345944	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	92345944	92345944	G	A	SNP	GPC5	NM_004466	human	genbank	57_37b	+1	reviewed	missense	c.829	p.V277I	0.943	HMMPfam_Glypican,PatternScan_GLYPICAN	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
ITGB8	3696	genome.wustl.edu	37	7	20441487	20441487	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	20441487	20441487	A	T	SNP	ITGB8	NM_002214	human	genbank	57_37b	+1	reviewed	missense	c.1425	p.R475S	0.012	NULL	HMMSmart_SM00423,HMMPfam_Integrin_beta,HMMSmart_SM00187,superfamily_vWA-like,superfamily_Integrin domains,superfamily_EGF/Laminin,HMMPfam_EGF_2,PatternScan_INTEGRIN_BETA,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
NT5E	4907	genome.wustl.edu	37	6	86201888	86201888	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	86201888	86201888	T	C	SNP	NT5E	NM_002526	human	genbank	57_37b	+1	validated	silent	c.1554	p.H518	0.971	superfamily_5apos-Nucleotdase_C	superfamily_SSF56300,PatternScan_5_NUCLEOTIDASE_1,HMMPfam_Metallophos,PatternScan_5_NUCLEOTIDASE_2,HMMPfam_5_nucleotid_C,superfamily_5apos-Nucleotdase_C	-	no_errors
OPN1LW	5956	genome.wustl.edu	37	X	153416306	153416306	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153416306	153416306	C	T	SNP	OPN1LW	NM_020061	human	genbank	57_37b	+1	reviewed	silent	c.291	p.V97	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	-	no_errors
PER2	8864	genome.wustl.edu	37	2	239162318	239162318	+	Silent	SNP	G	A	A	rs10195959	byCluster;by1000genomes	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239162318	239162318	G	A	SNP	PER2	NM_022817	human	genbank	57_37b	-1	reviewed	silent	c.2346	p.S782	0.529	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	
SGK1	6446	genome.wustl.edu	37	6	134492799	134492799	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	134492799	134492799	G	C	SNP	SGK1	NM_001143676	human	genbank	57_37b	-1	reviewed	silent	c.1143	p.V381	0.992	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
SGK1	6446	genome.wustl.edu	37	6	134493422	134493422	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	134493422	134493422	G	T	SNP	SGK1	NM_001143676	human	genbank	57_37b	-1	reviewed	nonsense	c.980	p.S327*	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
SYMPK	8189	genome.wustl.edu	37	19	46319770	46319770	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46319770	46319770	G	A	SNP	SYMPK	NM_004819	human	genbank	57_37b	-1	reviewed	silent	c.3324	p.A1108	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578491	7578491	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578491	7578491	C	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.439	p.V147fs	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors
TSHZ2	128553	genome.wustl.edu	37	20	51870526	51870526	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	51870526	51870526	C	A	SNP	TSHZ2	NM_173485	human	genbank	57_37b	+1	validated	missense	c.529	p.L177M	1.000	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX,HMMPfam_Homeobox,HMMPfam_zf-C2H2	-	no_errors
ZDBF2	57683	genome.wustl.edu	37	2	207170990	207170990	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1F0-01A-11D-A135-09	TCGA-BH-A1F0-11B-23D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	207170990	207170990	G	T	SNP	ZDBF2	NM_020923	human	genbank	57_37b	+1	validated	nonsense	c.1738	p.E580*	0.900	NULL	HMMPfam_zf-DBF	-	no_errors
