Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ALDH3B1	221	genome.wustl.edu	37	11	67795381	67795381	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67795381	67795381	A	C	SNP	ALDH3B1	ENST00000007633	human	ensembl	57_37b	+1	known	missense	c.1373	p.Q458P	0.000	NULL	superfamily_ALDH-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
ATP1A4	480	genome.wustl.edu	37	1	160147410	160147410	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160147410	160147410	G	C	SNP	ATP1A4	NM_144699	human	genbank	57_37b	+1	reviewed	missense	c.2692	p.D898H	0.116	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_C	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
CCDC102A	92922	genome.wustl.edu	37	16	57550287	57550287	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57550287	57550287	A	C	SNP	CCDC102A	NM_033212	human	genbank	57_37b	-1	validated	missense	c.1337	p.V446G	1.000	NULL	NULL	-	no_errors
CFHR2	3080	genome.wustl.edu	37	1	196918689	196918689	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	196918689	196918689	T	C	SNP	CFHR2	NM_005666	human	genbank	57_37b	+1	validated	missense	c.163	p.C55R	0.032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
CLIP1	6249	genome.wustl.edu	37	12	122825972	122825972	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122825972	122825972	G	A	SNP	CLIP1	NM_002956	human	genbank	57_37b	-1	validated	silent	c.1746	p.T582	0.000	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
CNTN2	6900	genome.wustl.edu	37	1	205028352	205028352	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205028352	205028352	A	C	SNP	CNTN2	NM_005076	human	genbank	57_37b	+1	reviewed	missense	c.628	p.T210P	1.000	superfamily_SSF48726,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
CORO2A	7464	genome.wustl.edu	37	9	100887118	100887118	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100887118	100887118	C	T	SNP	CORO2A	NM_003389	human	genbank	57_37b	-1	reviewed	missense	c.1516	p.V506I	1.000	NULL	HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900,PatternScan_GLNA_1	-	no_errors
CRIPAK	285464	genome.wustl.edu	37	4	1388441	1388441	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1388441	1388441	A	G	SNP	CRIPAK	NM_175918	human	genbank	57_37b	+1	validated	missense	c.142	p.M48V	0.008	HMMSmart_PostSET	HMMSmart_PostSET	-	no_errors
EML5	161436	genome.wustl.edu	37	14	89094085	89094085	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	89094085	89094085	C	-	DEL	EML5	NM_183387	human	genbank	57_37b	-1	validated	frame_shift_del	c.4436	p.G1479fs	1.000	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320	HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320,HMMPfam_WD40,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1	(deletion:cds_exon[89093990,89094163])	no_errors
ENSG00000186082	0	genome.wustl.edu	37	11	35882741	35882741	+	Missense_Mutation	SNP	C	C	G	rs648921	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	35882741	35882741	C	G	SNP	ENSG00000186082	ENST00000333983	human	ensembl	57_37b	-1	known	missense	c.312	p.Q104H	0.242	HMMPfam_Filament	HMMPfam_Filament	-	
ENSG00000238748	0	genome.wustl.edu	37	12	100795963	100795963	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100795963	100795963	G	A	SNP	ENSG00000238748	ENST00000459038	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
ENSG00000244978	0	genome.wustl.edu	37	22	24085966	24085966	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24085966	24085966	G	T	SNP	ENSG00000244978	ENST00000501125	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
FAM86B1	85002	genome.wustl.edu	37	8	12044059	12044059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12044059	12044059	G	A	SNP	FAM86B1	NM_001083537	human	genbank	57_37b	-1	predicted	missense	c.442	p.R148W	0.195	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
IL1RL2	8808	genome.wustl.edu	37	2	102818091	102818091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	102818091	102818091	G	A	SNP	IL1RL2	NM_003854	human	genbank	57_37b	+1	reviewed	missense	c.565	p.D189N	0.340	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors
IL28B	282617	genome.wustl.edu	37	19	39735556	39735556	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39735556	39735556	C	T	SNP	IL28B	NM_172139	human	genbank	57_37b	-1	reviewed	missense	c.52	p.V18M	0.001	NULL	NULL	-	no_errors
KIAA0664	23277	genome.wustl.edu	37	17	2598235	2598235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2598235	2598235	G	A	SNP	KIAA0664	NM_015229	human	genbank	57_37b	-1	validated	missense	c.2651	p.T884I	0.993	NULL	superfamily_SSF103107,superfamily_SSF48452	-	no_errors
KIFC1	3833	genome.wustl.edu	37	6	33371608	33371608	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33371608	33371608	G	T	SNP	KIFC1	NM_002263	human	genbank	57_37b	+1	validated	missense	c.458	p.C153F	0.158	NULL	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LAMB2	3913	genome.wustl.edu	37	3	49167413	49167413	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49167413	49167413	G	A	SNP	LAMB2	NM_002292	human	genbank	57_37b	-1	reviewed	missense	c.1264	p.R422C	0.987	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
LOC100287896	0	genome.wustl.edu	37	11	74209012	74209012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	74209012	74209012	G	A	SNP	LOC100287896	XM_002343118	human	genbank	57_37b	+1	model	missense	c.1062	p.M354I	0.438	NULL	HMMPfam_CENP-B_N,HMMPfam_CenpB-DNA-bind,superfamily_Homeodomain-like,HMMSmart_SM00674	-	no_errors
LOC644189	644189	genome.wustl.edu	37	19	36912804	36912804	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36912804	36912804	G	C	SNP	LOC644189	XR_016949	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.995	-	-	-	no_errors
LRP1B	53353	genome.wustl.edu	37	2	141598583	141598583	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	141598583	141598583	G	A	SNP	LRP1B	NM_018557	human	genbank	57_37b	-1	validated	missense	c.5018	p.T1673M	1.000	superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,HMMPfam_EGF,HMMPfam_NHL,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors
MYF6	4618	genome.wustl.edu	37	12	81101884	81101884	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81101884	81101884	C	T	SNP	MYF6	NM_002469	human	genbank	57_37b	+1	provisional	missense	c.386	p.P129L	1.000	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	HMMPfam_Basic,HMMSmart_SM00520,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
PCDHB14	56122	genome.wustl.edu	37	5	140605357	140605357	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140605357	140605357	G	C	SNP	PCDHB14	NM_018934	human	genbank	57_37b	+1	reviewed	silent	c.2280	p.G760	0.002	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
PCDHGB1	56104	genome.wustl.edu	37	5	140731438	140731438	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140731438	140731438	G	A	SNP	PCDHGB1	NM_018922	human	genbank	57_37b	+1	reviewed	silent	c.1611	p.A537	0.700	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PIK3R1	5295	genome.wustl.edu	37	5	67591130	67591150	+	In_Frame_Del	DEL	AAGACGAGAGACCAATACTTG	AAGACGAGAGACCAATACTTG	-	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	AAGACGAGAGACCAATACTTG	AAGACGAGAGACCAATACTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67591130	67591150	AAGACGAGAGACCAATACTTG	-	DEL	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1723_1743	p.KTRDQYL575in_frame_del	1.000:1.000:1.000:1.000:0.999:0.016:0.975:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.989:1.000:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	(deletion:cds_exon[67590976,67591152])	no_errors
POMT2	29954	genome.wustl.edu	37	14	77757676	77757676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77757676	77757676	C	T	SNP	POMT2	NM_013382	human	genbank	57_37b	-1	reviewed	silent	c.1164	p.K388	1.000	superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR	HMMPfam_PMT,PatternScan_SERPIN,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472,HMMPfam_MIR	-	no_errors
PSMC6	5706	genome.wustl.edu	37	14	53173897	53173897	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	53173897	53173897	T	C	SNP	PSMC6	NM_002806	human	genbank	57_37b	+1	reviewed	missense	c.2	p.M1T	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
RAD54B	25788	genome.wustl.edu	37	8	95392443	95392443	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95392443	95392443	C	A	SNP	RAD54B	NM_012415	human	genbank	57_37b	-1	reviewed	missense	c.2177	p.G726V	1.000	superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C	superfamily_SSF52540,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C	-	no_errors
RBAK	57786	genome.wustl.edu	37	7	5103484	5103484	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5103484	5103484	A	G	SNP	RBAK	NM_021163	human	genbank	57_37b	+1	reviewed	missense	c.397	p.I133V	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RGS9	8787	genome.wustl.edu	37	17	63221255	63221255	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	63221255	63221255	C	T	SNP	RGS9	NM_003835	human	genbank	57_37b	+1	reviewed	missense	c.1543	p.R515W	0.588	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	no_errors
RIMS2	9699	genome.wustl.edu	37	8	104924348	104924348	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	104924348	104924348	G	A	SNP	RIMS2	NM_001100117	human	genbank	57_37b	+1	validated	missense	c.1760	p.R587H	1.000	superfamily_PDZ domain-like	HMMPfam_RPH3A_effector,superfamily_FYVE/PHD zinc finger,superfamily_PDZ domain-like,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
RYR1	6261	genome.wustl.edu	37	19	38973696	38973696	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38973696	38973696	C	T	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	silent	c.4650	p.A1550	0.064	HMMPfam_SPRY,HMMSmart_SM00449	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237881772	237881772	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237881772	237881772	A	G	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.10505	p.E3502G	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
STK32C	282974	genome.wustl.edu	37	10	134036380	134036380	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	134036380	134036380	C	T	SNP	STK32C	NM_173575	human	genbank	57_37b	-1	reviewed	silent	c.1104	p.P368	0.005	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
USP42	84132	genome.wustl.edu	37	7	6155014	6155014	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6155014	6155014	T	G	SNP	USP42	NM_032172	human	genbank	57_37b	+1	validated	missense	c.302	p.L101R	1.000	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors
USP49	25862	genome.wustl.edu	37	6	41773690	41773690	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	41773690	41773690	G	A	SNP	USP49	NM_018561	human	genbank	57_37b	-1	provisional	silent	c.1032	p.L344	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ZHX3	23051	genome.wustl.edu	37	20	39832443	39832443	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Q-01A-11D-A12B-09	TCGA-E2-A14Q-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39832443	39832443	G	A	SNP	ZHX3	NM_015035	human	genbank	57_37b	-1	reviewed	missense	c.1114	p.R372W	1.000	superfamily_Homeodomain_like	PatternScan_ZINC_FINGER_C2H2_1,PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,HMMSmart_HOX,superfamily_Homeodomain_like,HMMPfam_Homeobox	-	no_errors
