Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACSM4	341392	genome.wustl.edu	37	12	7475135	7475135	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7475135	7475135	G	T	SNP	ACSM4	NM_001080454	human	genbank	57_37b	+1	provisional	missense	c.1123	p.V375L	1.000	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
ADAM30	11085	genome.wustl.edu	37	1	120438621	120438621	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	120438621	120438621	C	A	SNP	ADAM30	NM_021794	human	genbank	57_37b	-1	reviewed	missense	c.339	p.M113I	0.031	HMMPfam_Pep_M12B_propep	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,PatternScan_EGF_2"	-	no_errors
AKTIP	64400	genome.wustl.edu	37	16	53534164	53534164	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	53534164	53534164	G	C	SNP	AKTIP	NM_001012398	human	genbank	57_37b	-1	reviewed	missense	c.8	p.P3R	1.000	NULL	HMMPfam_UQ_con,superfamily_UBC-like,HMMSmart_SM00212	-	no_errors
ARFGAP2	84364	genome.wustl.edu	37	11	47193042	47193042	+	Silent	SNP	T	G	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47193042	47193042	T	G	SNP	ARFGAP2	NM_032389	human	genbank	57_37b	-1	provisional	silent	c.876	p.L292	0.521	NULL	superfamily_ArfGAP,HMMPfam_ArfGap,HMMSmart_ArfGap	-	no_errors
ARID1B	57492	genome.wustl.edu	37	6	157522383	157522383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	157522383	157522383	G	A	SNP	ARID1B	NM_017519	human	genbank	57_37b	+1	validated	missense	c.4601	p.R1534K	1.000	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
ASPM	259266	genome.wustl.edu	37	1	197073197	197073197	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197073197	197073197	C	A	SNP	ASPM	NM_018136	human	genbank	57_37b	-1	reviewed	missense	c.5184	p.M1728I	0.012	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015	superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
ASXL3	80816	genome.wustl.edu	37	18	31320313	31320313	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	31320313	31320313	T	A	SNP	ASXL3	NM_030632	human	genbank	57_37b	+1	provisional	missense	c.2945	p.I982K	1.000	NULL	NULL	-	no_errors
B4GALT1	2683	genome.wustl.edu	37	9	33116073	33116073	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	33116073	33116073	A	G	SNP	B4GALT1	NM_001497	human	genbank	57_37b	-1	reviewed	missense	c.875	p.L292P	0.997	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	-	no_errors
C12orf63	374467	genome.wustl.edu	37	12	97045441	97045441	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	97045441	97045441	C	A	SNP	C12orf63	NM_198520	human	genbank	57_37b	+1	validated	missense	c.223	p.L75I	0.933	NULL	NULL	-	no_errors
C2orf78	388960	genome.wustl.edu	37	2	74042839	74042839	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74042839	74042839	G	C	SNP	C2orf78	NM_001080474	human	genbank	57_37b	+1	predicted	missense	c.1489	p.D497H	0.004	NULL	NULL	-	no_errors
C9orf84	158401	genome.wustl.edu	37	9	114464479	114464479	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	114464479	114464479	C	A	SNP	C9orf84	NM_173521	human	genbank	57_37b	-1	validated	missense	c.2803	p.A935S	1.000	NULL	NULL	-	no_errors
CD86	942	genome.wustl.edu	37	3	121828123	121828123	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121828123	121828123	C	G	SNP	CD86	NM_175862	human	genbank	57_37b	+1	reviewed	missense	c.715	p.P239A	0.000	NULL	HMMPfam_V-set,HMMSmart_SM00409,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_errors
CHD1L	9557	genome.wustl.edu	37	1	146759365	146759365	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	146759365	146759365	G	C	SNP	CHD1L	NM_004284	human	genbank	57_37b	+1	validated	missense	c.2273	p.R758P	1.000	NULL	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
CHRNA1	1134	genome.wustl.edu	37	2	175613362	175613362	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	175613362	175613362	G	A	SNP	CHRNA1	NM_001039523	human	genbank	57_37b	-1	reviewed	silent	c.1263	p.I421	0.022	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
CLRN2	645104	genome.wustl.edu	37	4	17528460	17528460	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	17528460	17528460	A	G	SNP	CLRN2	NM_001079827	human	genbank	57_37b	+1	reviewed	missense	c.454	p.I152V	0.933	NULL	NULL	-	no_errors
CNTNAP2	26047	genome.wustl.edu	37	7	146829361	146829361	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	146829361	146829361	G	T	SNP	CNTNAP2	NM_014141	human	genbank	57_37b	+1	reviewed	nonsense	c.1108	p.E370*	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	-	no_errors
CNTNAP2	26047	genome.wustl.edu	37	7	146829361	146829361	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	146829361	146829361	G	T	SNP	CNTNAP2	NM_014141	human	genbank	57_37b	+1	reviewed	nonsense	c.1108	p.E370*	1.000	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like,PatternScan_GLYCO_HORMONE_BETA_1,HMMSmart_SM00294	-	no_errors
COL18A1	80781	genome.wustl.edu	37	21	46876470	46876471	+	In_Frame_Ins	INS	-	-	GTCTGC	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	46876470	46876471	-	GTCTGC	INS	COL18A1	NM_130444	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.1026_1027	p.344in_frame_insVC	0.000:0.000	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063	HMMPfam_DUF959,HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_Endostatin	-	no_errors
COL5A2	1290	genome.wustl.edu	37	2	189928732	189928732	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189928732	189928732	C	G	SNP	COL5A2	NM_000393	human	genbank	57_37b	-1	reviewed	missense	c.1744	p.G582R	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_COLFI,HMMPfam_COLFI	-	no_errors
CPXM1	56265	genome.wustl.edu	37	20	2775057	2775057	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2775057	2775057	G	A	SNP	CPXM1	NM_019609	human	genbank	57_37b	-1	reviewed	missense	c.1984	p.R662C	1.000	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34254306	34254306	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34254306	34254306	C	A	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.1438	p.G480C	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
CUL7	9820	genome.wustl.edu	37	6	43017144	43017144	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43017144	43017144	C	T	SNP	CUL7	NM_014780	human	genbank	57_37b	-1	reviewed	splice_site	c.1825+1	e6+1	0.960	-	-	-	no_errors
EFR3A	23167	genome.wustl.edu	37	8	132966110	132966110	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	132966110	132966110	A	G	SNP	EFR3A	NM_015137	human	genbank	57_37b	+1	validated	silent	c.534	p.K178	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
ENSG00000210195	0	genome.wustl.edu	37	MT	15928	15928	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	15928	15928	G	A	SNP	ENSG00000210195	ENST00000387460	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000246904	0	genome.wustl.edu	37	17	58539313	58539313	+	RNA	SNP	T	C	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	58539313	58539313	T	C	SNP	ENSG00000246904	ENST00000499514	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ETS2	2114	genome.wustl.edu	37	21	40188980	40188980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40188980	40188980	C	T	SNP	ETS2	NM_005239	human	genbank	57_37b	+1	validated	missense	c.554	p.T185I	0.930	NULL	superfamily_SAM_homology,HMMPfam_SAM_PNT,HMMSmart_SAM_PNT,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
FLT3LG	2323	genome.wustl.edu	37	19	49978980	49978989	+	Frame_Shift_Del	DEL	GGGACTCAGT	GGGACTCAGT	-	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	GGGACTCAGT	GGGACTCAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49978980	49978989	GGGACTCAGT	-	DEL	FLT3LG	NM_001459	human	genbank	57_37b	+1	validated	frame_shift_del	c.66_75	p.L24fs	0.000:0.000:0.005:0.172:0.187:0.137:0.003:0.002:0.004:0.007	NULL	HMMPfam_Flt3_lig,superfamily_4-helical cytokines	(deletion:cds_exon[49978948,49979058])	no_errors
FLT3LG	2323	genome.wustl.edu	37	19	49978980	49978989	+	Frame_Shift_Del	DEL	GGGACTCAGT	GGGACTCAGT	-	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	GGGACTCAGT	GGGACTCAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49978980	49978989	GGGACTCAGT	-	DEL	FLT3LG	NM_001459	human	genbank	57_37b	+1	validated	frame_shift_del	c.66_75	p.L24fs	0.000:0.000:0.005:0.172:0.187:0.137:0.003:0.002:0.004:0.007	NULL	HMMPfam_Flt3_lig,superfamily_4-helical cytokines	(deletion:cds_exon[49978948,49979058])	no_errors
FRAS1	80144	genome.wustl.edu	37	4	79340212	79340212	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79340212	79340212	A	T	SNP	FRAS1	NM_025074	human	genbank	57_37b	+1	reviewed	missense	c.4532	p.N1511I	0.046	NULL	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
FURIN	5045	genome.wustl.edu	37	15	91423399	91423399	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	91423399	91423399	G	A	SNP	FURIN	NM_002569	human	genbank	57_37b	+1	reviewed	silent	c.1452	p.L484	1.000	superfamily_Gal_bind_like,HMMPfam_P_proprotein	superfamily_Prot_inh_propept,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein,HMMSmart_FU,superfamily_Grow_fac_recept	-	no_errors
GPD2	2820	genome.wustl.edu	37	2	157407221	157407221	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	157407221	157407221	A	G	SNP	GPD2	NM_000408	human	genbank	57_37b	+1	reviewed	missense	c.934	p.S312G	0.996	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,PatternScan_FAD_G3PDH_1,superfamily_FAD-linked reductases C-terminal domain,PatternScan_FAD_G3PDH_2,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
GPR35	2859	genome.wustl.edu	37	2	241569563	241569563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	241569563	241569563	C	T	SNP	GPR35	NM_005301	human	genbank	57_37b	+1	provisional	missense	c.194	p.A65V	0.155	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HLF	3131	genome.wustl.edu	37	17	53398125	53398125	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	53398125	53398125	C	G	SNP	HLF	NM_002126	human	genbank	57_37b	+1	reviewed	missense	c.773	p.S258W	0.999	HMMSmart_SM00338,HMMPfam_bZIP_2	HMMSmart_SM00338,HMMPfam_bZIP_2	-	no_errors
HRC	3270	genome.wustl.edu	37	19	49658427	49658427	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49658427	49658427	G	T	SNP	HRC	NM_002152	human	genbank	57_37b	-1	reviewed	missense	c.68	p.P23H	0.987	NULL	HMMPfam_Hist_rich_Ca-bd	-	no_errors
HRH3	11255	genome.wustl.edu	37	20	60794857	60794857	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60794857	60794857	A	T	SNP	HRH3	NM_007232	human	genbank	57_37b	-1	validated	missense	c.170	p.L57H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
IGBP1	3476	genome.wustl.edu	37	X	69353826	69353826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69353826	69353826	C	T	SNP	IGBP1	NM_001551	human	genbank	57_37b	+1	reviewed	missense	c.29	p.P10L	0.979	NULL	HMMPfam_TAP42	-	no_errors
IGSF1	3547	genome.wustl.edu	37	X	130408820	130408820	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	130408820	130408820	C	T	SNP	IGSF1	NM_001555	human	genbank	57_37b	-1	reviewed	nonsense	c.3504	p.W1168*	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408	-	no_errors
IL2RB	3560	genome.wustl.edu	37	22	37540124	37540124	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	37540124	37540124	C	A	SNP	IL2RB	NM_000878	human	genbank	57_37b	-1	reviewed	splice_site	c.88+1	e1+1	0.989	-	-	-	no_errors
IPO13	9670	genome.wustl.edu	37	1	44422562	44422562	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44422562	44422562	T	C	SNP	IPO13	NM_014652	human	genbank	57_37b	+1	reviewed	silent	c.1185	p.D395	0.996	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
IQGAP3	128239	genome.wustl.edu	37	1	156498803	156498803	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156498803	156498803	C	G	SNP	IQGAP3	NM_178229	human	genbank	57_37b	-1	validated	missense	c.4476	p.Q1492H	0.988	HMMPfam_RasGAP_C	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors
KIAA1109	84162	genome.wustl.edu	37	4	123207765	123207765	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	123207765	123207765	C	T	SNP	KIAA1109	NM_015312	human	genbank	57_37b	+1	reviewed	missense	c.9107	p.T3036I	1.000	NULL	PatternScan_ASP_PROTEASE,HMMPfam_FSA_C	-	no_errors
LETMD1	25875	genome.wustl.edu	37	12	51450235	51450235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51450235	51450235	G	A	SNP	LETMD1	NM_015416	human	genbank	57_37b	+1	validated	missense	c.865	p.A289T	0.997	HMMPfam_LETM1	HMMPfam_LETM1	-	no_errors
LOC100128031	0	genome.wustl.edu	37	7	73245517	73245517	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73245517	73245517	C	G	SNP	LOC100128031	XM_002342735	human	genbank	57_37b	-1	model	missense	c.446	p.R149P	0.000	NULL	NULL	-	no_errors
LOC100132108	0	genome.wustl.edu	37	1	155815738	155815738	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155815738	155815738	G	A	SNP	LOC100132108	XM_001725162	human	genbank	57_37b	+1	model	silent	c.441	p.Q147	1.000	NULL	HMMPfam_Mov34	-	no_errors
LOXHD1	125336	genome.wustl.edu	37	18	44157812	44157812	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	44157812	44157812	C	T	SNP	LOXHD1	NM_144612	human	genbank	57_37b	-1	reviewed	missense	c.994	p.E332K	1.000	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	-	no_errors
LRRN2	10446	genome.wustl.edu	37	1	204588156	204588156	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204588156	204588156	C	T	SNP	LRRN2	NM_006338	human	genbank	57_37b	-1	reviewed	missense	c.965	p.R322Q	0.982	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
MAB21L2	10586	genome.wustl.edu	37	4	151504781	151504781	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151504781	151504781	G	C	SNP	MAB21L2	NM_006439	human	genbank	57_37b	+1	reviewed	silent	c.600	p.V200	1.000	HMMPfam_Mab-21	HMMPfam_Mab-21	-	no_errors
MASP2	10747	genome.wustl.edu	37	1	11107016	11107016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11107016	11107016	G	A	SNP	MASP2	NM_006610	human	genbank	57_37b	-1	reviewed	missense	c.166	p.R56C	1.000	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB	superfamily_Spermadhesin CUB domain,HMMSmart_SM00042,HMMPfam_CUB,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	-	no_errors
MDM2	4193	genome.wustl.edu	37	12	69202261	69202261	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	69202261	69202261	G	C	SNP	MDM2	NM_002392	human	genbank	57_37b	+1	reviewed	missense	c.4	p.V2L	0.064	NULL	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,HMMPfam_zf-RanBP,PatternScan_ZF_RANBP2_1,superfamily_RING/U-box	-	no_errors
MIR522	0	genome.wustl.edu	37	19	54254529	54254529	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54254529	54254529	C	G	SNP	MIR522	ENST00000385071	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.203	-	-	-	no_errors
MYCBP2	23077	genome.wustl.edu	37	13	77644815	77644815	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	77644815	77644815	A	G	SNP	MYCBP2	NM_015057	human	genbank	57_37b	-1	validated	missense	c.11741	p.M3914T	1.000	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184	-	no_errors
NACA	4666	genome.wustl.edu	37	12	57110900	57110900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57110900	57110900	G	T	SNP	NACA	NM_001113203	human	genbank	57_37b	-1	validated	missense	c.4414	p.P1472T	0.000	NULL	HMMPfam_NAC,HMMPfam_UBA	-	no_errors
NOMO3	408050	genome.wustl.edu	37	16	16349580	16349580	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	16349580	16349580	G	A	SNP	NOMO3	NM_001004067	human	genbank	57_37b	+1	reviewed	missense	c.967	p.V323M	0.997	superfamily_Starch-binding domain-like	superfamily_Starch-binding domain-like,HMMPfam_Cna_B,superfamily_Carboxypeptidase regulatory domain	-	no_errors
OR10H2	26538	genome.wustl.edu	37	19	15838966	15838966	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15838966	15838966	C	T	SNP	OR10H2	NM_013939	human	genbank	57_37b	+1	validated	missense	c.113	p.T38M	0.994	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR9A4	130075	genome.wustl.edu	37	7	141619011	141619011	+	Silent	SNP	C	C	T	rs73529456	byCluster;by1000genomes	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141619011	141619011	C	T	SNP	OR9A4	NM_001001656	human	genbank	57_37b	+1	provisional	silent	c.336	p.F112	0.001	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
PCDHGA5	56110	genome.wustl.edu	37	5	140746002	140746002	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140746002	140746002	G	C	SNP	PCDHGA5	NM_018918	human	genbank	57_37b	+1	reviewed	missense	c.2105	p.C702S	0.933	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PEG3	5178	genome.wustl.edu	37	19	57326308	57326308	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57326308	57326308	A	C	SNP	PEG3	NM_006210	human	genbank	57_37b	-1	reviewed	missense	c.3502	p.C1168G	0.996	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PHEX	5251	genome.wustl.edu	37	X	22208620	22208620	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	22208620	22208620	G	A	SNP	PHEX	NM_000444	human	genbank	57_37b	+1	reviewed	splice_site	c.1645+1	e15+1	0.999	-	-	-	no_errors
PLAGL2	5326	genome.wustl.edu	37	20	30785163	30785171	+	In_Frame_Del	DEL	GGTCACAGG	GGTCACAGG	-	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	GGTCACAGG	GGTCACAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	30785163	30785171	GGTCACAGG	-	DEL	PLAGL2	NM_002657	human	genbank	57_37b	-1	reviewed	in_frame_del	c.583_575	p.PCD192in_frame_del	1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[30784255,30785485])	no_errors
PLAGL2	5326	genome.wustl.edu	37	20	30785163	30785171	+	In_Frame_Del	DEL	GGTCACAGG	GGTCACAGG	-	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-11A-22D-A12B-09	GGTCACAGG	GGTCACAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	30785163	30785171	GGTCACAGG	-	DEL	PLAGL2	NM_002657	human	genbank	57_37b	-1	reviewed	in_frame_del	c.583_575	p.PCD192in_frame_del	1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[30784255,30785485])	no_errors
PLCE1	51196	genome.wustl.edu	37	10	96030357	96030357	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	96030357	96030357	A	C	SNP	PLCE1	NM_016341	human	genbank	57_37b	+1	reviewed	missense	c.4504	p.K1502Q	1.000	HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149,HMMPfam_PI-PLC-Y,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
POU2F1	5451	genome.wustl.edu	37	1	167367365	167367365	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167367365	167367365	T	G	SNP	POU2F1	NM_002697	human	genbank	57_37b	+1	provisional	missense	c.1195	p.L399V	0.977	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PPM1B	5495	genome.wustl.edu	37	2	44457678	44457678	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44457678	44457678	G	C	SNP	PPM1B	NM_002706	human	genbank	57_37b	+1	reviewed	missense	c.1261	p.A421P	1.000	NULL	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C,HMMPfam_PP2C_C,superfamily_Protein serine/threonine phosphatase 2C C-terminal domain	-	no_errors
PTPN7	5778	genome.wustl.edu	37	1	202119541	202119541	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	202119541	202119541	C	G	SNP	PTPN7	NM_080588	human	genbank	57_37b	-1	reviewed	missense	c.1004	p.G335A	1.000	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PTPRE	5791	genome.wustl.edu	37	10	129875909	129875909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	129875909	129875909	G	A	SNP	PTPRE	NM_006504	human	genbank	57_37b	+1	reviewed	missense	c.1754	p.R585Q	0.937	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RBM24	221662	genome.wustl.edu	37	6	17283067	17283067	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	17283067	17283067	G	C	SNP	RBM24	NM_001143942	human	genbank	57_37b	+1	validated	missense	c.200	p.R67T	1.000	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors
RNF130	55819	genome.wustl.edu	37	5	179440193	179440193	+	Silent	SNP	C	A	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179440193	179440193	C	A	SNP	RNF130	NM_018434	human	genbank	57_37b	-1	reviewed	silent	c.561	p.P187	0.086	superfamily_SSF52025	PatternScan_ZF_RING_1,superfamily_SSF52025,HMMPfam_PA,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
SAMD1	90378	genome.wustl.edu	37	19	14199331	14199331	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14199331	14199331	C	T	SNP	SAMD1	NM_138352	human	genbank	57_37b	-1	provisional	silent	c.1197	p.L399	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
SCFD2	152579	genome.wustl.edu	37	4	53752015	53752015	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	53752015	53752015	T	A	SNP	SCFD2	NM_152540	human	genbank	57_37b	-1	validated	missense	c.1861	p.S621C	1.000	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	superfamily_Sec1/munc18-like (SM) proteins,HMMPfam_Sec1	-	no_errors
SERPINB3	6317	genome.wustl.edu	37	18	61325830	61325830	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61325830	61325830	G	C	SNP	SERPINB3	NM_006919	human	genbank	57_37b	-1	validated	missense	c.386	p.T129S	0.792	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093	HMMPfam_Serpin,superfamily_Serpins,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors
SLC29A3	55315	genome.wustl.edu	37	10	73111428	73111428	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	73111428	73111428	T	C	SNP	SLC29A3	ENST00000373189	human	ensembl	57_37b	+1	known	missense	c.493	p.F165L	1.000	NULL	HMMPfam_Nucleoside_tran	-	no_errors
SLC4A5	57835	genome.wustl.edu	37	2	74474219	74474219	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74474219	74474219	T	A	SNP	SLC4A5	NM_021196	human	genbank	57_37b	-1	reviewed	missense	c.2003	p.D668V	0.999	HMMPfam_HCO3_cotransp	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp	-	no_errors
SLC5A5	6528	genome.wustl.edu	37	19	17985316	17985316	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17985316	17985316	G	T	SNP	SLC5A5	NM_000453	human	genbank	57_37b	+1	reviewed	missense	c.437	p.G146V	0.999	HMMPfam_SSF	PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors
SNORD32A	0	genome.wustl.edu	37	19	49993282	49993282	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49993282	49993282	C	T	SNP	SNORD32A	NR_000021	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.998	-	-	-	no_errors
SNORD83B	0	genome.wustl.edu	37	22	39712624	39712624	+	RNA	SNP	A	A	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39712624	39712624	A	T	SNP	SNORD83B	ENST00000501495	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
SNX10	29887	genome.wustl.edu	37	7	26412173	26412173	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	26412173	26412173	C	G	SNP	SNX10	NM_013322	human	genbank	57_37b	+1	reviewed	missense	c.587	p.T196R	0.020	NULL	superfamily_PX,HMMPfam_PX,HMMSmart_PX	-	no_errors
SPAST	6683	genome.wustl.edu	37	2	32379525	32379525	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32379525	32379525	A	G	SNP	SPAST	NM_014946	human	genbank	57_37b	+1	reviewed	missense	c.1811	p.Y604C	1.000	NULL	HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
STAT4	6775	genome.wustl.edu	37	2	191900935	191900935	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	191900935	191900935	C	T	SNP	STAT4	NM_003151	human	genbank	57_37b	-1	reviewed	missense	c.1525	p.G509S	1.000	HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd	superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMPfam_SH2,HMMSmart_SH2	-	no_errors
TBC1D23	55773	genome.wustl.edu	37	3	100015073	100015073	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	100015073	100015073	C	G	SNP	TBC1D23	NM_018309	human	genbank	57_37b	+1	validated	missense	c.830	p.S277C	1.000	superfamily_Ypt/Rab-GAP domain of gyp1p	HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,superfamily_Rhodanese/Cell cycle control phosphatase	-	no_errors
TDRD5	163589	genome.wustl.edu	37	1	179609514	179609514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179609514	179609514	G	A	SNP	TDRD5	NM_173533	human	genbank	57_37b	+1	provisional	silent	c.1734	p.K578	0.999	HMMPfam_TUDOR,HMMSmart_SM00333	HMMPfam_TUDOR,superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333	-	no_errors
TMEM18	129787	genome.wustl.edu	37	2	675561	675561	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	675561	675561	A	T	SNP	TMEM18	NM_152834	human	genbank	57_37b	-1	validated	missense	c.127	p.C43S	0.141	NULL	NULL	-	no_errors
TMEM51	55092	genome.wustl.edu	37	1	15541910	15541910	+	Missense_Mutation	SNP	C	C	A	rs72874051	byCluster;by1000genomes	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15541910	15541910	C	A	SNP	TMEM51	NM_001136216	human	genbank	57_37b	+1	validated	missense	c.327	p.H109Q	0.000	NULL	NULL	-	
TP53	7157	genome.wustl.edu	37	17	7578265	7578265	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578265	7578265	A	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.584	p.I195T	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRIM43	129868	genome.wustl.edu	37	2	96259815	96259815	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96259815	96259815	G	C	SNP	TRIM43	NM_138800	human	genbank	57_37b	+1	provisional	missense	c.44	p.C15S	0.061	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_SPRY	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179585241	179585241	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179585241	179585241	T	G	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.19516	p.I6506L	0.978	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179592849	179592849	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179592849	179592849	A	C	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.15970	p.L5324V	0.999	HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UGGT2	55757	genome.wustl.edu	37	13	96547535	96547535	+	Silent	SNP	A	G	G	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	96547535	96547535	A	G	SNP	UGGT2	NM_020121	human	genbank	57_37b	-1	validated	silent	c.2658	p.D886	0.989	NULL	HMMPfam_UDP-g_GGTase,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
VANGL2	57216	genome.wustl.edu	37	1	160388826	160388826	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160388826	160388826	C	T	SNP	VANGL2	NM_020335	human	genbank	57_37b	+1	validated	missense	c.227	p.T76M	0.996	HMMPfam_Strabismus	HMMPfam_Strabismus	-	no_errors
ZNF100	163227	genome.wustl.edu	37	19	21909523	21909523	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	21909523	21909523	G	C	SNP	ZNF100	NM_173531	human	genbank	57_37b	-1	validated	missense	c.1591	p.Q531E	0.933	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF181	339318	genome.wustl.edu	37	19	35232115	35232115	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A158-01A-11D-A12B-09	TCGA-E2-A158-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35232115	35232115	G	T	SNP	ZNF181	NM_001029997	human	genbank	57_37b	+1	validated	missense	c.829	p.G277C	0.206	HMMSmart_SM00614,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00614	-	no_errors
