Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACVR1B	91	genome.wustl.edu	37	12	52377883	52377883	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52377883	52377883	G	T	SNP	ACVR1B	NM_004302	human	genbank	57_37b	+1	reviewed	missense	c.912	p.M304I	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ACVR1B	91	genome.wustl.edu	37	12	52380701	52380701	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52380701	52380701	G	C	SNP	ACVR1B	NM_004302	human	genbank	57_37b	+1	reviewed	missense	c.1236	p.E412D	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMPfam_Activin_recp,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Snake toxin-like	-	no_errors
AIM1	202	genome.wustl.edu	37	6	106967869	106967869	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106967869	106967869	G	C	SNP	AIM1	NM_001624	human	genbank	57_37b	+1	validated	missense	c.1562	p.G521A	0.010	NULL	superfamily_G_crystallin_SF,HMMSmart_XTALbg,HMMPfam_Crystall,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors
AK5	26289	genome.wustl.edu	37	1	77748056	77748056	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	77748056	77748056	G	C	SNP	AK5	NM_174858	human	genbank	57_37b	+1	reviewed	missense	c.58	p.E20Q	1.000	HMMPfam_Dpy-30	HMMPfam_Dpy-30,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ADK,PatternScan_ADENYLATE_KINASE	-	no_errors
ANO9	338440	genome.wustl.edu	37	11	419605	419605	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	419605	419605	C	G	SNP	ANO9	NM_001012302	human	genbank	57_37b	-1	validated	silent	c.1911	p.L637	0.000	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
APOB	338	genome.wustl.edu	37	2	21232419	21232419	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21232419	21232419	C	T	SNP	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	missense	c.7321	p.D2441N	0.029	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
ARHGEF19	128272	genome.wustl.edu	37	1	16525668	16525668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16525668	16525668	G	A	SNP	ARHGEF19	NM_153213	human	genbank	57_37b	-1	provisional	missense	c.2228	p.S743L	1.000	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	no_errors
ARID1B	57492	genome.wustl.edu	37	6	157528895	157528895	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	157528895	157528895	G	A	SNP	ARID1B	NM_017519	human	genbank	57_37b	+1	validated	missense	c.6566	p.R2189K	0.995	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
ARID4B	51742	genome.wustl.edu	37	1	235345497	235345497	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235345497	235345497	C	G	SNP	ARID4B	NM_016374	human	genbank	57_37b	-1	reviewed	missense	c.2737	p.D913H	1.000	NULL	HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160076224	160076224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160076224	160076224	C	T	SNP	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	missense	c.715	p.V239M	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
BAIAP2L1	55971	genome.wustl.edu	37	7	97937087	97937087	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	97937087	97937087	G	C	SNP	BAIAP2L1	NM_018842	human	genbank	57_37b	-1	reviewed	silent	c.1077	p.L359	0.088	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	HMMPfam_IMD,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	-	no_errors
BANK1	55024	genome.wustl.edu	37	4	102946639	102946639	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	102946639	102946639	C	A	SNP	BANK1	NM_017935	human	genbank	57_37b	+1	reviewed	missense	c.1567	p.L523M	0.220	NULL	superfamily_Ankyrin repeat	-	no_errors
BAZ2B	29994	genome.wustl.edu	37	2	160257133	160257133	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	160257133	160257133	G	C	SNP	BAZ2B	NM_013450	human	genbank	57_37b	-1	validated	missense	c.2875	p.L959V	1.000	NULL	superfamily_DNA-binding domain,HMMPfam_MBD,HMMSmart_SM00391,HMMPfam_DDT,HMMSmart_SM00571,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
BRS3	680	genome.wustl.edu	37	X	135570328	135570328	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135570328	135570328	G	T	SNP	BRS3	NM_001727	human	genbank	57_37b	+1	validated	missense	c.55	p.D19Y	1.000	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
C11orf20	0	genome.wustl.edu	37	11	64068205	64068205	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64068205	64068205	C	G	SNP	C11orf20	NM_001039496	human	genbank	57_37b	+1	validated	missense	c.98	p.T33R	0.063	NULL	NULL	-	no_errors
C11orf20	0	genome.wustl.edu	37	11	64072038	64072038	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64072038	64072038	G	A	SNP	C11orf20	NM_001039496	human	genbank	57_37b	+1	validated	missense	c.523	p.D175N	0.091	NULL	NULL	-	no_errors
C1QTNF7	114905	genome.wustl.edu	37	4	15444327	15444327	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15444327	15444327	C	G	SNP	C1QTNF7	NM_001135170	human	genbank	57_37b	+1	validated	missense	c.795	p.F265L	1.000	HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
C20orf26	26074	genome.wustl.edu	37	20	20269469	20269469	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20269469	20269469	C	T	SNP	C20orf26	NM_015585	human	genbank	57_37b	+1	validated	nonsense	c.3013	p.Q1005*	0.997	superfamily_FAD/NAD(P)-binding domain	superfamily_Acyl-CoA N-acyltransferases (Nat),superfamily_FAD/NAD(P)-binding domain	-	no_errors
C2orf50	130813	genome.wustl.edu	37	2	11284204	11284204	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11284204	11284204	G	C	SNP	C2orf50	NM_182500	human	genbank	57_37b	+1	validated	missense	c.456	p.K152N	1.000	NULL	NULL	-	no_errors
C3orf39	84892	genome.wustl.edu	37	3	43122777	43122777	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	43122777	43122777	C	T	SNP	C3orf39	NM_032806	human	genbank	57_37b	-1	provisional	silent	c.147	p.L49	0.000	NULL	superfamily_Fibronectin type III	-	no_errors
C4orf43	55319	genome.wustl.edu	37	4	164436573	164436573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	164436573	164436573	G	A	SNP	C4orf43	NM_018352	human	genbank	57_37b	+1	validated	silent	c.348	p.T116	0.002	NULL	NULL	-	no_errors
CASC3	22794	genome.wustl.edu	37	17	38296935	38296935	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	38296935	38296935	G	C	SNP	CASC3	NM_007359	human	genbank	57_37b	+1	reviewed	missense	c.134	p.S45T	0.998	NULL	HMMPfam_Btz	-	no_errors
CCDC84	338657	genome.wustl.edu	37	11	118885784	118885784	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118885784	118885784	C	G	SNP	CCDC84	NM_198489	human	genbank	57_37b	+1	provisional	missense	c.796	p.L266V	1.000	NULL	NULL	-	no_errors
CD1E	913	genome.wustl.edu	37	1	158325653	158325653	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158325653	158325653	C	G	SNP	CD1E	NM_030893	human	genbank	57_37b	+1	reviewed	missense	c.662	p.P221R	0.057	superfamily_Immunoglobulin,HMMPfam_C1-set	superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
CDC5L	988	genome.wustl.edu	37	6	44358031	44358031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44358031	44358031	G	A	SNP	CDC5L	NM_001253	human	genbank	57_37b	+1	reviewed	missense	c.72	p.M24I	1.000	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	superfamily_Homeodomain_like,HMMSmart_SANT,HMMPfam_Myb_DNA-binding	-	no_errors
CDHR1	0	genome.wustl.edu	37	10	85962805	85962805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	85962805	85962805	G	A	SNP	CDHR1	NM_033100	human	genbank	57_37b	+1	reviewed	missense	c.709	p.E237K	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
CEACAM18	729767	genome.wustl.edu	37	19	51983701	51983701	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51983701	51983701	T	A	SNP	CEACAM18	NM_001080405	human	genbank	57_37b	+1	provisional	missense	c.350	p.V117D	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
CENPO	79172	genome.wustl.edu	37	2	25040616	25040616	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25040616	25040616	C	T	SNP	CENPO	NM_024322	human	genbank	57_37b	+1	provisional	nonsense	c.844	p.Q282*	0.009	NULL	HMMPfam_Cenp-O	-	no_errors
COL23A1	91522	genome.wustl.edu	37	5	177669088	177669088	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177669088	177669088	C	G	SNP	COL23A1	NM_173465	human	genbank	57_37b	-1	validated	missense	c.1536	p.Q512H	1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
CORO2A	7464	genome.wustl.edu	37	9	100890527	100890527	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100890527	100890527	C	T	SNP	CORO2A	NM_003389	human	genbank	57_37b	-1	reviewed	missense	c.1096	p.E366K	1.000	HMMPfam_DUF1900	HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900,PatternScan_GLNA_1	-	no_errors
CPZ	8532	genome.wustl.edu	37	4	8607783	8607783	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8607783	8607783	C	G	SNP	CPZ	NM_001014447	human	genbank	57_37b	+1	reviewed	missense	c.777	p.I259M	1.000	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
CUBN	8029	genome.wustl.edu	37	10	16955917	16955917	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	16955917	16955917	G	A	SNP	CUBN	NM_001081	human	genbank	57_37b	-1	reviewed	missense	c.7426	p.R2476W	0.962	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
CXorf19	0	genome.wustl.edu	37	X	138444474	138444474	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	138444474	138444474	G	T	SNP	CXorf19	ENST00000416227	human	ensembl	57_37b	+1	known	missense	c.216	p.K72N	0.039	NULL	HMMPfam_SNURF	-	no_errors
DMC1	11144	genome.wustl.edu	37	22	38933603	38933603	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38933603	38933603	G	A	SNP	DMC1	NM_007068	human	genbank	57_37b	-1	reviewed	missense	c.830	p.T277I	1.000	HMMPfam_Rad51,superfamily_SSF52540,HMMSmart_AAA	superfamily_Rad51_N,HMMPfam_HHH,HMMPfam_Rad51,superfamily_SSF52540,HMMSmart_AAA	-	no_errors
DNAH2	146754	genome.wustl.edu	37	17	7667478	7667478	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7667478	7667478	T	G	SNP	DNAH2	NM_020877	human	genbank	57_37b	+1	validated	missense	c.3223	p.L1075V	0.006	superfamily_Spectrin repeat	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DOCK11	139818	genome.wustl.edu	37	X	117679991	117679991	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117679991	117679991	C	T	SNP	DOCK11	NM_144658	human	genbank	57_37b	+1	validated	missense	c.470	p.S157F	0.890	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto	-	no_errors
DOK3	79930	genome.wustl.edu	37	5	176931433	176931433	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176931433	176931433	C	G	SNP	DOK3	NM_024872	human	genbank	57_37b	-1	validated	missense	c.1042	p.E348Q	0.001	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_IRS,HMMSmart_SM00310	-	no_errors
DPY19L4	286148	genome.wustl.edu	37	8	95751734	95751734	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	95751734	95751734	G	C	SNP	DPY19L4	NM_181787	human	genbank	57_37b	+1	validated	missense	c.437	p.S146T	1.000	HMMPfam_DUF2211	HMMPfam_DUF2211	-	no_errors
ECM1	1893	genome.wustl.edu	37	1	150484178	150484178	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150484178	150484178	C	T	SNP	ECM1	NM_004425	human	genbank	57_37b	+1	reviewed	silent	c.954	p.F318	0.966	HMMPfam_ECM1	HMMPfam_ECM1,superfamily_Serum albumin-like	-	no_errors
EML2	24139	genome.wustl.edu	37	19	46128000	46128000	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46128000	46128000	C	A	SNP	EML2	NM_012155	human	genbank	57_37b	-1	provisional	missense	c.818	p.G273V	1.000	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,HMMPfam_HELP,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,superfamily_Peptidase_S9A_N	-	no_errors
ENSG00000197309	0	genome.wustl.edu	37	11	124056732	124056732	+	Nonsense_Mutation	SNP	T	T	G	rs2512227	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124056732	124056732	T	G	SNP	ENSG00000197309	ENST00000318666	human	ensembl	57_37b	+1	known	nonsense	c.756	p.Y252*	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	
ENSG00000197309	0	genome.wustl.edu	37	11	124056787	124056787	+	Missense_Mutation	SNP	G	G	A	rs2512226	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124056787	124056787	G	A	SNP	ENSG00000197309	ENST00000318666	human	ensembl	57_37b	+1	known	missense	c.811	p.V271M	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	
ENSG00000220987	0	genome.wustl.edu	37	7	95936107	95936107	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	95936107	95936107	C	G	SNP	ENSG00000220987	ENST00000408060	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.009	-	-	-	no_errors
ENSG00000231657	0	genome.wustl.edu	37	11	557881	557881	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	557881	557881	C	T	SNP	ENSG00000231657	ENST00000441104	human	ensembl	57_37b	+1	known	silent	c.54	p.L18	0.988	NULL	NULL	-	no_errors
ENSG00000245102	0	genome.wustl.edu	37	10	38120483	38120483	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38120483	38120483	C	G	SNP	ENSG00000245102	ENST00000500437	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.895	-	-	-	no_errors
ENSG00000245945	0	genome.wustl.edu	37	4	183812287	183812287	+	RNA	SNP	A	A	G	rs3190314	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	183812287	183812287	A	G	SNP	ENSG00000245945	ENST00000500813	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247849	0	genome.wustl.edu	37	6	88273672	88273672	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	88273672	88273672	C	G	SNP	ENSG00000247849	ENST00000501986	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.822	-	-	-	no_errors
EPS8L1	54869	genome.wustl.edu	37	19	55591557	55591557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55591557	55591557	G	A	SNP	EPS8L1	NM_133180	human	genbank	57_37b	+1	reviewed	missense	c.340	p.G114S	0.713	HMMSmart_SM00462,HMMPfam_PTB	HMMSmart_SM00462,HMMPfam_PTB,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	-	no_errors
ERG	2078	genome.wustl.edu	37	21	39817464	39817464	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	39817464	39817464	C	T	SNP	ERG	NM_001136154	human	genbank	57_37b	-1	validated	missense	c.120	p.M40I	1.000	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
FAM114A2	10827	genome.wustl.edu	37	5	153409057	153409057	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153409057	153409057	G	C	SNP	FAM114A2	NM_018691	human	genbank	57_37b	-1	validated	missense	c.487	p.Q163E	1.000	HMMPfam_DUF719	HMMPfam_DUF719	-	no_errors
FAM22F	54754	genome.wustl.edu	37	9	97082696	97082696	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	97082696	97082696	C	T	SNP	FAM22F	NM_017561	human	genbank	57_37b	-1	validated	missense	c.1162	p.E388K	0.469	NULL	NULL	-	no_errors
FAM83F	113828	genome.wustl.edu	37	22	40425538	40425538	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	40425538	40425538	C	A	SNP	FAM83F	NM_138435	human	genbank	57_37b	+1	validated	missense	c.1472	p.S491Y	0.002	NULL	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease	-	no_errors
FASTK	10922	genome.wustl.edu	37	7	150774081	150774081	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150774081	150774081	G	A	SNP	FASTK	NM_006712	human	genbank	57_37b	-1	reviewed	silent	c.1461	p.F487	1.000	HMMPfam_RAP	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
G3BP1	10146	genome.wustl.edu	37	5	151178806	151178806	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	151178806	151178806	C	G	SNP	G3BP1	NM_005754	human	genbank	57_37b	+1	reviewed	missense	c.775	p.L259V	1.000	NULL	HMMPfam_NTF2,superfamily_NTF2-like,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
GOLSYN	55638	genome.wustl.edu	37	8	110587700	110587700	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	110587700	110587700	C	T	SNP	GOLSYN	NM_001099744	human	genbank	57_37b	-1	validated	missense	c.1427	p.G476D	0.000	NULL	NULL	-	no_errors
GPR179	440435	genome.wustl.edu	37	17	36482587	36482587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36482587	36482587	C	T	SNP	GPR179	NM_001004334	human	genbank	57_37b	-1	validated	missense	c.6865	p.E2289K	0.997	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3	-	no_errors
GREB1	9687	genome.wustl.edu	37	2	11702668	11702668	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	11702668	11702668	C	A	SNP	GREB1	NM_014668	human	genbank	57_37b	+1	reviewed	missense	c.237	p.F79L	1.000	NULL	NULL	-	no_errors
HIST1H2BC	8347	genome.wustl.edu	37	6	26123759	26123759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26123759	26123759	G	A	SNP	HIST1H2BC	NM_003526	human	genbank	57_37b	-1	reviewed	missense	c.374	p.S125F	1.000	superfamily_Histone-fold	superfamily_Histone-fold,HMMSmart_SM00427,HMMPfam_Histone,PatternScan_HISTONE_H2B	-	no_errors
HIST2H3D	653604	genome.wustl.edu	37	1	149785205	149785205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149785205	149785205	G	A	SNP	HIST2H3D	NM_001123375	human	genbank	57_37b	-1	provisional	missense	c.32	p.S11L	1.000	superfamily_Histone-fold	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	-	no_errors
HORMAD1	84072	genome.wustl.edu	37	1	150684035	150684035	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150684035	150684035	G	C	SNP	HORMAD1	NM_032132	human	genbank	57_37b	-1	provisional	missense	c.313	p.P105A	1.000	superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA	superfamily_The spindle assembly checkpoint protein mad2,HMMPfam_HORMA	-	no_errors
IGDCC3	9543	genome.wustl.edu	37	15	65628154	65628154	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	65628154	65628154	C	G	SNP	IGDCC3	NM_004884	human	genbank	57_37b	-1	validated	missense	c.550	p.E184Q	1.000	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
IQGAP3	128239	genome.wustl.edu	37	1	156531792	156531792	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156531792	156531792	G	C	SNP	IQGAP3	NM_178229	human	genbank	57_37b	-1	validated	silent	c.879	p.V293	0.993	NULL	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors
ITSN2	50618	genome.wustl.edu	37	2	24484608	24484608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24484608	24484608	C	T	SNP	ITSN2	NM_006277	human	genbank	57_37b	-1	reviewed	missense	c.2359	p.D787N	1.000	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1	superfamily_EF-hand,HMMSmart_SM00027,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
IVD	3712	genome.wustl.edu	37	15	40710373	40710373	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40710373	40710373	C	T	SNP	IVD	NM_002225	human	genbank	57_37b	+1	reviewed	nonsense	c.1183	p.R395*	1.000	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2	superfamily_AcylCoA_dehyd_NM,HMMPfam_Acyl-CoA_dh_N,HMMPfam_Acyl-CoA_dh_M,PatternScan_ACYL_COA_DH_1,HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like,PatternScan_ACYL_COA_DH_2	-	no_errors
KIF13A	63971	genome.wustl.edu	37	6	17837174	17837174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	17837174	17837174	C	T	SNP	KIF13A	NM_022113	human	genbank	57_37b	-1	validated	missense	c.1090	p.A364T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMPfam_FHA	-	no_errors
KLK15	55554	genome.wustl.edu	37	19	51330233	51330233	+	Missense_Mutation	SNP	G	G	T	rs7247190	byHapMap	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51330233	51330233	G	T	SNP	KLK15	NM_017509	human	genbank	57_37b	-1	reviewed	missense	c.382	p.P128T	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	
LAMB1	3912	genome.wustl.edu	37	7	107594139	107594139	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107594139	107594139	G	T	SNP	LAMB1	NM_002291	human	genbank	57_37b	-1	reviewed	nonsense	c.2915	p.S972*	0.000	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_Prefoldin	-	no_errors
LAMB3	3914	genome.wustl.edu	37	1	209803110	209803110	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	209803110	209803110	C	T	SNP	LAMB3	NM_000228	human	genbank	57_37b	-1	reviewed	silent	c.1104	p.P368	0.000	HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_LAM_1	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
LOC100131552	0	genome.wustl.edu	37	8	123715489	123715489	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	123715489	123715489	G	A	SNP	LOC100131552	XM_001724978	human	genbank	57_37b	-1	model	silent	c.189	p.I63	0.058	NULL	NULL	-	no_errors
LOC100131573	0	genome.wustl.edu	37	5	93929057	93929057	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	93929057	93929057	C	G	SNP	LOC100131573	XM_001716404	human	genbank	57_37b	+1	model	silent	c.636	p.V212	0.007	NULL	NULL	-	no_errors
LOC100288409	0	genome.wustl.edu	37	2	120194851	120194851	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	120194851	120194851	C	A	SNP	LOC100288409	XM_002342252	human	genbank	57_37b	-1	model	missense	c.123	p.R41S	0.040	NULL	NULL	-	no_errors
LOC100294067	0	genome.wustl.edu	37	7	4169889	4169889	+	Silent	SNP	C	C	T	rs734116	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	4169889	4169889	C	T	SNP	LOC100294067	XM_002344286	human	genbank	57_37b	-1	model	silent	c.1533	p.K511	0.019	NULL	NULL	-	
MACC1	346389	genome.wustl.edu	37	7	20199737	20199737	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	20199737	20199737	G	C	SNP	MACC1	NM_182762	human	genbank	57_37b	-1	validated	missense	c.247	p.Q83E	0.962	NULL	HMMPfam_SH3_2,superfamily_DEATH domain	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39797744	39797744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39797744	39797744	G	A	SNP	MACF1	NM_033044	human	genbank	57_37b	+1	reviewed	silent	c.804	p.V268	0.023	superfamily_SSF75399,HMMPfam_Plectin,HMMSmart_PLEC	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39798309	39798309	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39798309	39798309	G	C	SNP	MACF1	NM_033044	human	genbank	57_37b	+1	reviewed	missense	c.1369	p.E457Q	0.000	NULL	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MAGEB1	4112	genome.wustl.edu	37	X	30269315	30269315	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	30269315	30269315	C	A	SNP	MAGEB1	NM_002363	human	genbank	57_37b	+1	reviewed	missense	c.705	p.H235Q	0.001	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAGEB10	139422	genome.wustl.edu	37	X	27839536	27839536	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	27839536	27839536	C	T	SNP	MAGEB10	NM_182506	human	genbank	57_37b	+1	validated	missense	c.113	p.S38F	0.000	NULL	HMMPfam_MAGE	-	no_errors
MAN1B1	11253	genome.wustl.edu	37	9	139995528	139995528	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139995528	139995528	G	C	SNP	MAN1B1	NM_016219	human	genbank	57_37b	+1	validated	missense	c.988	p.E330Q	1.000	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	-	no_errors
MAP2K1	5604	genome.wustl.edu	37	15	66774131	66774131	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66774131	66774131	G	A	SNP	MAP2K1	NM_002755	human	genbank	57_37b	+1	reviewed	missense	c.607	p.E203K	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
METTL5	29081	genome.wustl.edu	37	2	170668867	170668867	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170668867	170668867	C	G	SNP	METTL5	ENST00000410097	human	ensembl	57_37b	-1	known	missense	c.691	p.E231Q	0.022	NULL	superfamily_SSF53335,HMMPfam_MTS,PatternScan_N6_MTASE	-	no_errors
MLXIP	22877	genome.wustl.edu	37	12	122516984	122516984	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122516984	122516984	G	C	SNP	MLXIP	ENST00000319080	human	ensembl	57_37b	+1	known	missense	c.225	p.Q75H	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
MYT1L	23040	genome.wustl.edu	37	2	1805566	1805566	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1805566	1805566	C	G	SNP	MYT1L	NM_015025	human	genbank	57_37b	-1	validated	missense	c.3172	p.E1058Q	1.000	NULL	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1	-	no_errors
NALCN	259232	genome.wustl.edu	37	13	102030929	102030929	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	102030929	102030929	C	A	SNP	NALCN	NM_052867	human	genbank	57_37b	-1	validated	missense	c.367	p.V123L	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
NCAM2	4685	genome.wustl.edu	37	21	22804504	22804504	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	22804504	22804504	G	A	SNP	NCAM2	NM_004540	human	genbank	57_37b	+1	reviewed	silent	c.1557	p.P519	0.034	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
NCKAP5	344148	genome.wustl.edu	37	2	133636435	133636435	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133636435	133636435	G	T	SNP	NCKAP5	NM_207363	human	genbank	57_37b	-1	validated	silent	c.634	p.R212	0.721	NULL	NULL	-	no_errors
NFIB	4781	genome.wustl.edu	37	9	14146751	14146751	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	14146751	14146751	C	G	SNP	NFIB	NM_005596	human	genbank	57_37b	-1	validated	missense	c.862	p.D288H	1.000	HMMPfam_CTF_NFI	HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1,HMMPfam_MH1,HMMSmart_SM00523,HMMPfam_CTF_NFI	-	no_errors
NFKBIA	4792	genome.wustl.edu	37	14	35873760	35873760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35873760	35873760	C	T	SNP	NFKBIA	NM_020529	human	genbank	57_37b	-1	reviewed	missense	c.91	p.D31N	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
NOTCH4	4855	genome.wustl.edu	37	6	32190561	32190561	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32190561	32190561	C	G	SNP	NOTCH4	NM_004557	human	genbank	57_37b	-1	reviewed	missense	c.178	p.E60Q	1.000	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_errors
NPAT	4863	genome.wustl.edu	37	11	108031617	108031617	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108031617	108031617	T	C	SNP	NPAT	NM_002519	human	genbank	57_37b	-1	validated	missense	c.4196	p.K1399R	1.000	NULL	HMMSmart_SM00667	-	no_errors
NPAT	4863	genome.wustl.edu	37	11	108032049	108032049	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108032049	108032049	G	C	SNP	NPAT	NM_002519	human	genbank	57_37b	-1	validated	nonsense	c.3764	p.S1255*	0.998	NULL	HMMSmart_SM00667	-	no_errors
NPDC1	56654	genome.wustl.edu	37	9	139934476	139934476	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139934476	139934476	C	G	SNP	NPDC1	NM_015392	human	genbank	57_37b	-1	validated	missense	c.832	p.E278Q	0.867	HMMPfam_NPDC1	HMMPfam_NPDC1	-	no_errors
NT5C1B	93034	genome.wustl.edu	37	2	18757611	18757611	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	18757611	18757611	C	G	SNP	NT5C1B	NM_001002006	human	genbank	57_37b	-1	validated	missense	c.1348	p.D450H	0.766	HMMPfam_5-nucleotidase	HMMPfam_5-nucleotidase	-	no_errors
OR10J1	26476	genome.wustl.edu	37	1	159409770	159409770	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159409770	159409770	G	C	SNP	OR10J1	NM_012351	human	genbank	57_37b	+1	validated	silent	c.222	p.L74	0.077	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2G3	81469	genome.wustl.edu	37	1	247769442	247769442	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247769442	247769442	C	G	SNP	OR2G3	NM_001001914	human	genbank	57_37b	+1	provisional	silent	c.555	p.L185	0.541	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2T35	403244	genome.wustl.edu	37	1	248801684	248801684	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248801684	248801684	C	G	SNP	OR2T35	NM_001001827	human	genbank	57_37b	-1	provisional	missense	c.876	p.L292F	0.960	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OS9	10956	genome.wustl.edu	37	12	58112055	58112055	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	58112055	58112055	G	A	SNP	OS9	NM_006812	human	genbank	57_37b	+1	reviewed	missense	c.1261	p.E421K	0.648	NULL	HMMPfam_PRKCSH,superfamily_Mannose 6-phosphate receptor domain	-	no_errors
OTOP2	92736	genome.wustl.edu	37	17	72926762	72926762	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72926762	72926762	G	C	SNP	OTOP2	NM_178160	human	genbank	57_37b	+1	provisional	silent	c.1032	p.L344	0.478	NULL	HMMPfam_DUF270	-	no_errors
PCDHB1	29930	genome.wustl.edu	37	5	140431703	140431703	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140431703	140431703	C	T	SNP	PCDHB1	NM_013340	human	genbank	57_37b	+1	reviewed	silent	c.648	p.D216	0.339	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCNT	5116	genome.wustl.edu	37	21	47851969	47851969	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47851969	47851969	A	G	SNP	PCNT	NM_006031	human	genbank	57_37b	+1	reviewed	missense	c.8591	p.E2864G	0.187	NULL	HMMPfam_PACT_coil_coil	-	no_errors
PCTK1	5127	genome.wustl.edu	37	X	47085540	47085540	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47085540	47085540	G	A	SNP	PCTK1	ENST00000428400	human	ensembl	57_37b	+1	known	nonsense	c.969	p.W323*	0.002	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PDE4D	5144	genome.wustl.edu	37	5	58270700	58270700	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	58270700	58270700	C	G	SNP	PDE4D	NM_001104631	human	genbank	57_37b	-1	validated	missense	c.2221	p.E741Q	1.000	NULL	superfamily_HD-domain/PDEase-like,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PENK	5179	genome.wustl.edu	37	8	57354365	57354365	+	Silent	SNP	C	C	T	rs112775720	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	57354365	57354365	C	T	SNP	PENK	NM_001135690	human	genbank	57_37b	-1	validated	silent	c.270	p.P90	0.000	NULL	HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR	-	
PHB2	11331	genome.wustl.edu	37	12	7076337	7076337	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7076337	7076337	C	T	SNP	PHB2	NM_001144831	human	genbank	57_37b	-1	validated	silent	c.786	p.K262	1.000	NULL	HMMSmart_SM00244,HMMPfam_Band_7	-	no_errors
PKD1	5310	genome.wustl.edu	37	16	2140301	2140301	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2140301	2140301	G	C	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	silent	c.12429	p.L4143	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
PRDM5	11107	genome.wustl.edu	37	4	121616407	121616407	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	121616407	121616407	C	T	SNP	PRDM5	NM_018699	human	genbank	57_37b	-1	reviewed	silent	c.1752	p.L584	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SET,HMMSmart_SM00317,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PRMT10	90826	genome.wustl.edu	37	4	148575483	148575483	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	148575483	148575483	G	C	SNP	PRMT10	NM_138364	human	genbank	57_37b	-1	provisional	missense	c.1565	p.S522C	1.000	NULL	superfamily_TPR-like,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
PRPF8	10594	genome.wustl.edu	37	17	1554097	1554097	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1554097	1554097	C	T	SNP	PRPF8	NM_006445	human	genbank	57_37b	-1	reviewed	silent	c.7007	p.*2336	0.823	NULL	HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_RRM_4,HMMPfam_U5_2-snRNA_bdg,HMMPfam_U6-snRNA_bdg,HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PROCT	-	no_errors
PTPRH	5794	genome.wustl.edu	37	19	55716783	55716783	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55716783	55716783	C	T	SNP	PTPRH	NM_002842	human	genbank	57_37b	-1	validated	missense	c.530	p.G177E	0.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PUM1	9698	genome.wustl.edu	37	1	31437562	31437562	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	31437562	31437562	G	A	SNP	PUM1	NM_001020658	human	genbank	57_37b	-1	reviewed	missense	c.2282	p.P761L	1.000	NULL	superfamily_ARM repeat,HMMPfam_PUF,HMMSmart_SM00025	-	no_errors
RAET1G	353091	genome.wustl.edu	37	6	150240756	150240756	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	150240756	150240756	C	T	SNP	RAET1G	NM_001001788	human	genbank	57_37b	-1	provisional	silent	c.282	p.L94	0.016	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I	-	no_errors
RANBP17	64901	genome.wustl.edu	37	5	170669806	170669806	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170669806	170669806	G	A	SNP	RANBP17	NM_022897	human	genbank	57_37b	+1	provisional	missense	c.2758	p.E920K	1.000	NULL	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors
RB1	5925	genome.wustl.edu	37	13	48955532	48955532	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48955532	48955532	T	A	SNP	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	missense	c.1648	p.L550I	1.000	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors
RB1	5925	genome.wustl.edu	37	13	48955534	48955534	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48955534	48955534	A	-	DEL	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1650	p.E551fs	1.000	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	(deletion:cds_exon[48955383,48955579])	no_errors
RBM14	10432	genome.wustl.edu	37	11	66392812	66392812	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66392812	66392812	C	T	SNP	RBM14	NM_006328	human	genbank	57_37b	+1	validated	nonsense	c.1465	p.Q489*	1.000	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors
RFX3	5991	genome.wustl.edu	37	9	3263041	3263041	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	3263041	3263041	G	T	SNP	RFX3	NM_134428	human	genbank	57_37b	-1	reviewed	missense	c.1499	p.T500K	1.000	NULL	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RLTPR	146206	genome.wustl.edu	37	16	67682005	67682005	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67682005	67682005	C	T	SNP	RLTPR	NM_001013838	human	genbank	57_37b	+1	provisional	silent	c.1122	p.L374	0.995	superfamily_RNI-like	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
RNF6	6049	genome.wustl.edu	37	13	26793693	26793693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	26793693	26793693	C	T	SNP	RNF6	NM_005977	human	genbank	57_37b	-1	reviewed	missense	c.94	p.E32K	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
SAGE1	55511	genome.wustl.edu	37	X	134995026	134995026	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134995026	134995026	C	G	SNP	SAGE1	NM_018666	human	genbank	57_37b	+1	reviewed	silent	c.2685	p.L895	0.001	NULL	NULL	-	no_errors
SCARA3	51435	genome.wustl.edu	37	8	27528720	27528720	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	27528720	27528720	C	T	SNP	SCARA3	NM_016240	human	genbank	57_37b	+1	reviewed	missense	c.1673	p.S558L	0.317	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
SFRS17A	8227	genome.wustl.edu	37	X	1712954	1712954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	1712954	1712954	C	T	SNP	SFRS17A	NM_005088	human	genbank	57_37b	+1	validated	missense	c.599	p.T200M	0.998	NULL	NULL	-	no_errors
SFTPB	6439	genome.wustl.edu	37	2	85893784	85893784	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85893784	85893784	C	G	SNP	SFTPB	NM_000542	human	genbank	57_37b	-1	reviewed	missense	c.349	p.D117H	0.003	superfamily_Saposin_like,HMMSmart_SapB,HMMPfam_SapB_2	HMMPfam_SapA,HMMSmart_SAPA,superfamily_Saposin_like,HMMPfam_SapB_1,HMMSmart_SapB,HMMPfam_SapB_2	-	no_errors
SIGLEC7	27036	genome.wustl.edu	37	19	51649165	51649165	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51649165	51649165	C	G	SNP	SIGLEC7	NM_014385	human	genbank	57_37b	+1	validated	missense	c.814	p.L272V	0.009	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
SLC15A5	0	genome.wustl.edu	37	12	16377519	16377519	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	16377519	16377519	C	G	SNP	SLC15A5	ENST00000344941	human	ensembl	57_37b	-1	known	missense	c.1180	p.A394P	1.000	HMMPfam_PTR2	HMMPfam_PTR2	-	no_errors
SLC26A6	65010	genome.wustl.edu	37	3	48667870	48667870	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48667870	48667870	C	A	SNP	SLC26A6	NM_022911	human	genbank	57_37b	-1	reviewed	splice_site	c.1326+1	e11+1	1.000	-	-	-	no_errors
SLC2A12	154091	genome.wustl.edu	37	6	134349970	134349970	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	134349970	134349970	G	T	SNP	SLC2A12	NM_145176	human	genbank	57_37b	-1	validated	silent	c.993	p.T331	0.997	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
SLC35B2	347734	genome.wustl.edu	37	6	44223268	44223268	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44223268	44223268	C	T	SNP	SLC35B2	NM_178148	human	genbank	57_37b	-1	validated	missense	c.474	p.M158I	1.000	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE,PatternScan_COPPER_BLUE	-	no_errors
SLC7A1	6541	genome.wustl.edu	37	13	30091320	30091320	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	30091320	30091320	G	A	SNP	SLC7A1	NM_003045	human	genbank	57_37b	-1	validated	silent	c.1638	p.I546	0.997	NULL	HMMPfam_AA_permease	-	no_errors
SOX11	6664	genome.wustl.edu	37	2	5833196	5833196	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	5833196	5833196	G	T	SNP	SOX11	NM_003108	human	genbank	57_37b	+1	reviewed	missense	c.343	p.D115Y	1.000	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
SPARC	6678	genome.wustl.edu	37	5	151047100	151047100	+	Silent	SNP	G	G	C	rs2304049	byFrequency;byHapMap	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	151047100	151047100	G	C	SNP	SPARC	NM_003118	human	genbank	57_37b	-1	provisional	silent	c.513	p.L171	0.996	HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand,PatternScan_OSTEONECTIN_2	superfamily_EGF/Laminin,HMMSmart_SM00274,HMMPfam_FOLN,PatternScan_OSTEONECTIN_1,HMMSmart_SM00280,HMMPfam_Kazal_1,superfamily_Kazal-type serine protease inhibitors,HMMPfam_SPARC_Ca_bdg,superfamily_EF-hand,PatternScan_OSTEONECTIN_2,PatternScan_EF_HAND_1	-	
SPTBN2	6712	genome.wustl.edu	37	11	66468355	66468355	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66468355	66468355	C	T	SNP	SPTBN2	NM_006946	human	genbank	57_37b	-1	reviewed	missense	c.3215	p.R1072H	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
STAG3	10734	genome.wustl.edu	37	7	99799582	99799582	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99799582	99799582	C	A	SNP	STAG3	NM_012447	human	genbank	57_37b	+1	validated	nonsense	c.2312	p.S771*	0.050	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_STAG	-	no_errors
SYCP2	10388	genome.wustl.edu	37	20	58494610	58494610	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	58494610	58494610	G	C	SNP	SYCP2	NM_014258	human	genbank	57_37b	-1	reviewed	missense	c.340	p.Q114E	0.004	NULL	NULL	-	no_errors
SYNE1	23345	genome.wustl.edu	37	6	152599233	152599233	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	152599233	152599233	G	T	SNP	SYNE1	NM_182961	human	genbank	57_37b	-1	reviewed	silent	c.18564	p.L6188	0.998	superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,HMMPfam_Spectrin,HMMPfam_KASH	-	no_errors
TARBP2	6895	genome.wustl.edu	37	12	53895943	53895943	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53895943	53895943	C	T	SNP	TARBP2	NM_134323	human	genbank	57_37b	+1	reviewed	silent	c.198	p.V66	1.000	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
TCHH	7062	genome.wustl.edu	37	1	152083125	152083125	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152083125	152083125	G	C	SNP	TCHH	NM_007113	human	genbank	57_37b	-1	provisional	silent	c.2568	p.L856	0.000	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
TFR2	7036	genome.wustl.edu	37	7	100238598	100238598	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100238598	100238598	C	A	SNP	TFR2	NM_003227	human	genbank	57_37b	-1	reviewed	splice_site	c.286+1	e2+1	1.000	-	-	-	no_errors
TGM5	9333	genome.wustl.edu	37	15	43545083	43545083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43545083	43545083	A	G	SNP	TGM5	NM_201631	human	genbank	57_37b	-1	reviewed	missense	c.736	p.Y246H	0.982	superfamily_Cysteine proteinases	superfamily_E set domains,HMMPfam_Transglut_N,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	no_errors
THRSP	7069	genome.wustl.edu	37	11	77775298	77775298	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	77775298	77775298	T	C	SNP	THRSP	NM_003251	human	genbank	57_37b	+1	reviewed	missense	c.371	p.L124P	1.000	HMMPfam_Spot_14	HMMPfam_Spot_14	-	no_errors
TIGIT	201633	genome.wustl.edu	37	3	114014431	114014431	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	114014431	114014431	C	T	SNP	TIGIT	NM_173799	human	genbank	57_37b	+1	validated	missense	c.101	p.S34F	1.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
TMTC1	83857	genome.wustl.edu	37	12	29709801	29709801	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	29709801	29709801	C	T	SNP	TMTC1	NM_175861	human	genbank	57_37b	-1	provisional	silent	c.1341	p.G447	0.811	superfamily_Protein prenylyltransferase,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_DUF1736,HMMSmart_SM00386,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1,superfamily_TPR-like	-	no_errors
TNKS2	80351	genome.wustl.edu	37	10	93572805	93572805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	93572805	93572805	G	A	SNP	TNKS2	NM_025235	human	genbank	57_37b	+1	validated	missense	c.265	p.D89N	1.000	superfamily_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2,superfamily_SSF56399,HMMPfam_PARP	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578203	7578203	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.646	p.V216M	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TPM3	7170	genome.wustl.edu	37	1	154163705	154163705	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154163705	154163705	T	A	SNP	TPM3	NM_152263	human	genbank	57_37b	-1	reviewed	missense	c.200	p.D67V	1.000	HMMPfam_Tropomyosin	HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN	-	no_errors
TRIM23	373	genome.wustl.edu	37	5	64892251	64892251	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64892251	64892251	G	C	SNP	TRIM23	NM_001656	human	genbank	57_37b	-1	reviewed	missense	c.1417	p.Q473E	1.000	HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00502,HMMSmart_SM00177,HMMSmart_SM00178,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,PatternScan_ARF	-	no_errors
TRIM46	80128	genome.wustl.edu	37	1	155150660	155150660	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155150660	155150660	C	G	SNP	TRIM46	NM_025058	human	genbank	57_37b	+1	validated	silent	c.1092	p.G364	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,superfamily_B-box zinc-binding domain,HMMPfam_fn3,superfamily_Fibronectin type III	-	no_errors
TRIO	7204	genome.wustl.edu	37	5	14399162	14399162	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14399162	14399162	T	C	SNP	TRIO	NM_007118	human	genbank	57_37b	+1	validated	missense	c.4597	p.Y1533H	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_CRAL/TRIO domain,HMMSmart_SM00516,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TSNARE1	203062	genome.wustl.edu	37	8	143356182	143356182	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143356182	143356182	T	G	SNP	TSNARE1	NM_145003	human	genbank	57_37b	-1	validated	missense	c.1406	p.E469A	0.997	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE	superfamily_t-snare,HMMSmart_t_SNARE,HMMPfam_SNARE	-	no_errors
TTC37	9652	genome.wustl.edu	37	5	94863730	94863730	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	94863730	94863730	C	G	SNP	TTC37	NM_014639	human	genbank	57_37b	-1	provisional	missense	c.1121	p.R374P	0.008	NULL	HMMSmart_TPR,superfamily_SSF48452,HMMPfam_TPR_1,superfamily_Prenyl_trans,HMMPfam_Sel1,HMMSmart_SEL1	-	no_errors
TUBAL3	79861	genome.wustl.edu	37	10	5436386	5436386	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5436386	5436386	G	T	SNP	TUBAL3	NM_024803	human	genbank	57_37b	-1	validated	missense	c.435	p.F145L	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
TXNDC8	255220	genome.wustl.edu	37	9	113065819	113065819	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113065819	113065819	C	G	SNP	TXNDC8	ENST00000374511	human	ensembl	57_37b	-1	known	missense	c.366	p.K122N	1.000	NULL	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19407923	19407923	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19407923	19407923	C	G	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	missense	c.15153	p.W5051C	1.000	NULL	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
UPB1	51733	genome.wustl.edu	37	22	24919738	24919738	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24919738	24919738	C	T	SNP	UPB1	NM_016327	human	genbank	57_37b	+1	reviewed	silent	c.1068	p.F356	1.000	superfamily_Carbon-nitrogen hydrolase	superfamily_Carbon-nitrogen hydrolase,HMMPfam_CN_hydrolase	-	no_errors
UTRN	7402	genome.wustl.edu	37	6	144761487	144761487	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144761487	144761487	G	C	SNP	UTRN	NM_007124	human	genbank	57_37b	+1	reviewed	splice_site	c.1393-1	e12-1	1.000	-	-	-	no_errors
UVRAG	7405	genome.wustl.edu	37	11	75590926	75590926	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	75590926	75590926	C	T	SNP	UVRAG	NM_003369	human	genbank	57_37b	+1	reviewed	missense	c.274	p.P92S	1.000	superfamily_C2_CaLB,HMMSmart_C2	superfamily_C2_CaLB,HMMSmart_C2	-	no_errors
WDR17	116966	genome.wustl.edu	37	4	177049888	177049888	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	177049888	177049888	G	C	SNP	WDR17	NM_170710	human	genbank	57_37b	+1	reviewed	splice_site	c.863-1	e6-1	1.000	-	-	-	no_errors
WDR46	9277	genome.wustl.edu	37	6	33247580	33247580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33247580	33247580	G	A	SNP	WDR46	NM_005452	human	genbank	57_37b	-1	validated	silent	c.1581	p.I527	0.999	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_AA_TRANSFER_CLASS_1,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_WD40,HMMPfam_BING4CT	-	no_errors
XIRP1	165904	genome.wustl.edu	37	3	39228203	39228203	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39228203	39228203	G	C	SNP	XIRP1	NM_194293	human	genbank	57_37b	-1	provisional	missense	c.2734	p.L912V	0.984	NULL	HMMPfam_Xin	-	no_errors
ZMYM4	9202	genome.wustl.edu	37	1	35873661	35873661	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	35873661	35873661	G	C	SNP	ZMYM4	NM_005095	human	genbank	57_37b	+1	validated	missense	c.3849	p.L1283F	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746,PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
ZNF318	24149	genome.wustl.edu	37	6	43306894	43306894	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43306894	43306894	A	C	SNP	ZNF318	NM_014345	human	genbank	57_37b	-1	validated	silent	c.4842	p.S1614	0.000	NULL	HMMSmart_SM00451,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF681	148213	genome.wustl.edu	37	19	23926992	23926992	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23926992	23926992	C	G	SNP	ZNF681	NM_138286	human	genbank	57_37b	-1	validated	missense	c.1360	p.E454Q	0.828	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF75D	7626	genome.wustl.edu	37	X	134427939	134427939	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A159-01A-11D-A10Y-09	TCGA-E2-A159-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134427939	134427939	A	C	SNP	ZNF75D	NM_007131	human	genbank	57_37b	-1	validated	missense	c.128	p.L43R	0.007	HMMPfam_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
