Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACAA2	10449	genome.wustl.edu	37	18	47329199	47329199	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47329199	47329199	C	A	SNP	ACAA2	NM_006111	human	genbank	57_37b	-1	reviewed	missense	c.41	p.R14L	1.000	superfamily_Thiolase-like,HMMPfam_Thiolase_N	superfamily_Thiolase-like,HMMPfam_Thiolase_N,PatternScan_THIOLASE_1,HMMPfam_Thiolase_C,PatternScan_THIOLASE_2,PatternScan_THIOLASE_3	-	no_errors
ACACB	32	genome.wustl.edu	37	12	109577236	109577236	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109577236	109577236	G	T	SNP	ACACB	NM_001093	human	genbank	57_37b	+1	reviewed	missense	c.26	p.C9F	0.847	NULL	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors
AGK	55750	genome.wustl.edu	37	7	141296374	141296374	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141296374	141296374	C	G	SNP	AGK	NM_018238	human	genbank	57_37b	+1	validated	missense	c.154	p.Q52E	1.000	NULL	HMMPfam_DAGK_cat,HMMSmart_SM00046	-	no_errors
ASL	435	genome.wustl.edu	37	7	65551616	65551616	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	65551616	65551616	C	T	SNP	ASL	NM_000048	human	genbank	57_37b	+1	reviewed	missense	c.491	p.A164V	1.000	HMMPfam_Lyase_1,superfamily_L-Aspartase-like	HMMPfam_Lyase_1,superfamily_L-Aspartase-like,PatternScan_FUMARATE_LYASES	-	no_errors
ATG4A	115201	genome.wustl.edu	37	X	107396915	107396915	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107396915	107396915	G	-	DEL	ATG4A	NM_052936	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1170	p.E391fs	1.000	NULL	HMMPfam_Peptidase_C54	(deletion:cds_exon[107396872,107396942])	no_errors
ATG4A	115201	genome.wustl.edu	37	X	107396915	107396915	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107396915	107396915	G	-	DEL	ATG4A	NM_052936	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1170	p.E391fs	1.000	NULL	HMMPfam_Peptidase_C54	(deletion:cds_exon[107396872,107396942])	no_errors
BFAR	51283	genome.wustl.edu	37	16	14738316	14738316	+	Missense_Mutation	SNP	A	A	C	rs79546825	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	14738316	14738316	A	C	SNP	BFAR	NM_016561	human	genbank	57_37b	+1	validated	missense	c.113	p.Y38S	0.998	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	
BRD8	10902	genome.wustl.edu	37	5	137480865	137480865	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	137480865	137480865	C	T	SNP	BRD8	NM_139199	human	genbank	57_37b	-1	reviewed	splice_site	c.3437+1	e25+1	1.000	-	-	-	no_errors
C11orf84	144097	genome.wustl.edu	37	11	63585290	63585290	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	63585290	63585290	G	A	SNP	C11orf84	NM_138471	human	genbank	57_37b	+1	predicted	silent	c.141	p.E47	0.953	NULL	NULL	-	no_errors
C7	730	genome.wustl.edu	37	5	40936438	40936438	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	40936438	40936438	A	T	SNP	C7	NM_000587	human	genbank	57_37b	+1	reviewed	splice_site	c.281-2	e5-2	0.997	-	-	-	no_errors
CCDC33	80125	genome.wustl.edu	37	15	74623630	74623630	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74623630	74623630	C	T	SNP	CCDC33	NM_025055	human	genbank	57_37b	+1	validated	silent	c.1764	p.P588	0.005	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors
CCDC66	285331	genome.wustl.edu	37	3	56653393	56653393	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56653393	56653393	G	A	SNP	CCDC66	NM_001141947	human	genbank	57_37b	+1	validated	missense	c.2473	p.E825K	0.970	NULL	NULL	-	no_errors
CENPE	1062	genome.wustl.edu	37	4	104084638	104084638	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	104084638	104084638	C	G	SNP	CENPE	NM_001813	human	genbank	57_37b	-1	validated	missense	c.1720	p.E574Q	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,PatternScan_AA_TRNA_LIGASE_I	-	no_errors
CIRH1A	84916	genome.wustl.edu	37	16	69202749	69202749	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69202749	69202749	A	C	SNP	CIRH1A	NM_032830	human	genbank	57_37b	+1	reviewed	missense	c.1970	p.D657A	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
CMYA5	202333	genome.wustl.edu	37	5	79032493	79032493	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79032493	79032493	C	A	SNP	CMYA5	NM_153610	human	genbank	57_37b	+1	validated	missense	c.7905	p.F2635L	0.007	NULL	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY	-	no_errors
CR1	1378	genome.wustl.edu	37	1	207753648	207753648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207753648	207753648	C	T	SNP	CR1	NM_000651	human	genbank	57_37b	+1	reviewed	missense	c.5000	p.S1667L	0.003	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
CRB1	23418	genome.wustl.edu	37	1	197397057	197397057	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197397057	197397057	C	T	SNP	CRB1	NM_201253	human	genbank	57_37b	+1	reviewed	missense	c.2602	p.P868S	0.013	superfamily_Concanavalin A-like lectins/glucanases	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CRYBG3	131544	genome.wustl.edu	37	3	97607255	97607255	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97607255	97607255	G	C	SNP	CRYBG3	NM_153605	human	genbank	57_37b	+1	validated	missense	c.1516	p.E506Q	1.000	superfamily_gamma-Crystallin-like,HMMSmart_SM00247	superfamily_gamma-Crystallin-like,HMMSmart_SM00247,HMMPfam_Crystall,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	-	no_errors
DCT	1638	genome.wustl.edu	37	13	95114308	95114318	+	Frame_Shift_Del	DEL	CTTCTGGAGAG	CTTCTGGAGAG	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	CTTCTGGAGAG	CTTCTGGAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	95114308	95114318	CTTCTGGAGAG	-	DEL	DCT	NM_001129889	human	genbank	57_37b	-1	validated	frame_shift_del	c.999_989	p.S330fs	0.988:0.962:0.675:0.263:0.234:0.246:0.342:0.993:0.994:0.972:1.000	superfamily_Di-copper_centre,HMMPfam_Tyrosinase	superfamily_Di-copper_centre,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1	(deletion:cds_exon[95114264,95114443])	no_errors
DCT	1638	genome.wustl.edu	37	13	95114308	95114318	+	Frame_Shift_Del	DEL	CTTCTGGAGAG	CTTCTGGAGAG	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	CTTCTGGAGAG	CTTCTGGAGAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	95114308	95114318	CTTCTGGAGAG	-	DEL	DCT	NM_001129889	human	genbank	57_37b	-1	validated	frame_shift_del	c.999_989	p.S330fs	0.988:0.962:0.675:0.263:0.234:0.246:0.342:0.993:0.994:0.972:1.000	superfamily_Di-copper_centre,HMMPfam_Tyrosinase	superfamily_Di-copper_centre,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Tyrosinase,PatternScan_TYROSINASE_1	(deletion:cds_exon[95114264,95114443])	no_errors
DMD	1756	genome.wustl.edu	37	X	31525555	31525555	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	31525555	31525555	T	-	DEL	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.8233	p.I2745fs	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	(deletion:cds_exon[31525398,31525570])	no_errors
DMD	1756	genome.wustl.edu	37	X	31525555	31525555	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	31525555	31525555	T	-	DEL	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.8233	p.I2745fs	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	(deletion:cds_exon[31525398,31525570])	no_errors
DSP	1832	genome.wustl.edu	37	6	7583848	7583848	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7583848	7583848	G	C	SNP	DSP	NM_004415	human	genbank	57_37b	+1	reviewed	missense	c.6353	p.R2118T	0.996	superfamily_Plakin repeat,HMMSmart_SM00250	superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
ECT2	1894	genome.wustl.edu	37	3	172520404	172520404	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	172520404	172520404	A	G	SNP	ECT2	NM_018098	human	genbank	57_37b	+1	reviewed	splice_site	c.1815-2	e17-2	1.000	-	-	-	no_errors
ENSG00000123908	0	genome.wustl.edu	37	8	141549423	141549423	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	141549423	141549423	T	A	SNP	ENSG00000123908	ENST00000220592	human	ensembl	57_37b	-1	known	missense	c.2165	p.E722V	1.000	superfamily_Ribonuclease H-like,HMMPfam_Piwi	superfamily_PAZ domain,HMMPfam_DUF1785,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
ENSG00000181984	0	genome.wustl.edu	37	15	20771933	20771933	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	20771933	20771933	C	T	SNP	ENSG00000181984	ENST00000318268	human	ensembl	57_37b	+1	known	missense	c.431	p.T144M	0.494	NULL	NULL	-	no_errors
ENSG00000214210	0	genome.wustl.edu	37	3	163719429	163719429	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	163719429	163719429	G	A	SNP	ENSG00000214210	ENST00000397815	human	ensembl	57_37b	-1	known	nonsense	c.511	p.R171*	0.000	HMMPfam_Neugrin	HMMPfam_Neugrin	-	no_errors
ENSG00000214210	0	genome.wustl.edu	37	3	163719429	163719429	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	163719429	163719429	G	A	SNP	ENSG00000214210	ENST00000397815	human	ensembl	57_37b	-1	known	nonsense	c.511	p.R171*	0.000	HMMPfam_Neugrin	HMMPfam_Neugrin	-	no_errors
ENSG00000233556	0	genome.wustl.edu	37	15	35385282	35385282	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	35385282	35385282	C	T	SNP	ENSG00000233556	ENST00000454093	human	ensembl	57_37b	+1	known	missense	c.601	p.H201Y	0.453	NULL	superfamily_CCCH zinc finger,HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_RNA-binding domain RBD,HMMSmart_SM00361	-	no_errors
ENSG00000247869	0	genome.wustl.edu	37	10	29751492	29751495	+	RNA	DEL	TGTT	TGTT	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	29751492	29751495	TGTT	-	DEL	ENSG00000247869	ENST00000500565	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.002:0.002:0.002:0.001	-	-	(deletion:rna[29750602,29753202])	no_errors
EPOR	2057	genome.wustl.edu	37	19	11493879	11493879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11493879	11493879	C	T	SNP	EPOR	NM_000121	human	genbank	57_37b	-1	reviewed	missense	c.145	p.E49K	0.002	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_HEMATOPO_REC_L_F1	-	no_errors
FAM114A1	92689	genome.wustl.edu	37	4	38910268	38910268	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	38910268	38910268	C	A	SNP	FAM114A1	NM_138389	human	genbank	57_37b	+1	validated	missense	c.713	p.T238N	1.000	HMMPfam_DUF719	HMMPfam_DUF719	-	no_errors
FBN3	84467	genome.wustl.edu	37	19	8191185	8191185	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8191185	8191185	G	A	SNP	FBN3	NM_032447	human	genbank	57_37b	-1	reviewed	silent	c.2601	p.C867	0.979	superfamily_TB module/8-cys domain	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
FBXL6	26233	genome.wustl.edu	37	8	145580359	145580380	+	In_Frame_Del	DEL	GGGGCAGCAGCTGCCCTGCAGA	GGGGCAGCAGCTGCCCTGCAGA	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	GGGGCAGCAGCTGCCCTGCAGA	GGGGCAGCAGCTGCCCTGCAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145580359	145580380	GGGGCAGCAGCTGCCCTGCAGA	-	DEL	FBXL6	NM_012162	human	genbank	57_37b	-1	reviewed	in_frame_del	c.894_880	p.GSCCP294in_frame_del	0.562:0.997:1.000:1.000:1.000:1.000:0.998:0.973:0.688:0.336:0.338:0.265:0.253:0.424:0.501	superfamily_RNI-like	superfamily_F-box domain,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367,HMMPfam_LRR_2,HMMPfam_LRR_1	(deletion:cds_exon[145580260,145580373], intron[145580374,145580467])	no_errors
FBXL6	26233	genome.wustl.edu	37	8	145580359	145580380	+	In_Frame_Del	DEL	GGGGCAGCAGCTGCCCTGCAGA	GGGGCAGCAGCTGCCCTGCAGA	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	GGGGCAGCAGCTGCCCTGCAGA	GGGGCAGCAGCTGCCCTGCAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145580359	145580380	GGGGCAGCAGCTGCCCTGCAGA	-	DEL	FBXL6	NM_012162	human	genbank	57_37b	-1	reviewed	in_frame_del	c.894_880	p.GSCCP294in_frame_del	0.562:0.997:1.000:1.000:1.000:1.000:0.998:0.973:0.688:0.336:0.338:0.265:0.253:0.424:0.501	superfamily_RNI-like	superfamily_F-box domain,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367,HMMPfam_LRR_2,HMMPfam_LRR_1	(deletion:cds_exon[145580260,145580373], intron[145580374,145580467])	no_errors
FBXO10	26267	genome.wustl.edu	37	9	37537587	37537587	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	37537587	37537587	G	A	SNP	FBXO10	NM_012166	human	genbank	57_37b	-1	validated	silent	c.939	p.I313	0.117	NULL	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383,superfamily_Pectin_lyas_like,HMMSmart_PbH1,HMMSmart_CASH	-	no_errors
FBXO41	150726	genome.wustl.edu	37	2	73487592	73487592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	73487592	73487592	C	T	SNP	FBXO41	NM_001080410	human	genbank	57_37b	-1	validated	missense	c.2557	p.E853K	1.000	superfamily_RNI-like	HMMPfam_zf-C2H2,HMMPfam_F-box,superfamily_F-box domain,superfamily_RNI-like	-	no_errors
FBXW2	26190	genome.wustl.edu	37	9	123550286	123550286	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123550286	123550286	G	C	SNP	FBXW2	NM_012164	human	genbank	57_37b	-1	reviewed	missense	c.251	p.S84C	1.000	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256	superfamily_F-box domain,HMMPfam_F-box,HMMSmart_SM00256,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
FLNC	2318	genome.wustl.edu	37	7	128491585	128491585	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128491585	128491585	C	A	SNP	FLNC	NM_001458	human	genbank	57_37b	+1	reviewed	silent	c.5745	p.T1915	0.034	HMMPfam_Filamin,superfamily_E set domains,HMMSmart_SM00557	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_E set domains,HMMPfam_Filamin,HMMSmart_SM00557	-	no_errors
FN1	2335	genome.wustl.edu	37	2	216262561	216262561	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216262561	216262561	C	G	SNP	FN1	NM_212482	human	genbank	57_37b	-1	reviewed	missense	c.3359	p.R1120P	0.991	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
GPR125	166647	genome.wustl.edu	37	4	22390713	22390713	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	22390713	22390713	G	C	SNP	GPR125	NM_145290	human	genbank	57_37b	-1	validated	silent	c.2721	p.P907	0.911	HMMPfam_7tm_2	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Hormone receptor domain (HRM Pfam 02793),HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GPR149	344758	genome.wustl.edu	37	3	154138885	154138885	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	154138885	154138885	T	C	SNP	GPR149	NM_001038705	human	genbank	57_37b	-1	provisional	silent	c.1566	p.K522	1.000	NULL	NULL	-	no_errors
HECW1	23072	genome.wustl.edu	37	7	43351515	43351515	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	43351515	43351515	G	A	SNP	HECW1	NM_015052	human	genbank	57_37b	+1	validated	missense	c.181	p.V61I	0.933	NULL	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
HEY1	23462	genome.wustl.edu	37	8	80679523	80679523	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	80679523	80679523	C	T	SNP	HEY1	NM_001040708	human	genbank	57_37b	-1	reviewed	silent	c.96	p.L32	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00511,HMMPfam_Hairy_orange	-	no_errors
HOXA5	3202	genome.wustl.edu	37	7	27182735	27182735	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27182735	27182735	G	T	SNP	HOXA5	NM_019102	human	genbank	57_37b	-1	reviewed	missense	c.492	p.S164R	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
HSN2	378465	genome.wustl.edu	37	12	977510	977510	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	977510	977510	C	T	SNP	HSN2	NM_213655	human	genbank	57_37b	+1	reviewed	missense	c.515	p.S172L	1.000	NULL	NULL	-	no_errors
IFI35	3430	genome.wustl.edu	37	17	41158967	41158967	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41158967	41158967	G	-	DEL	IFI35	NM_005533	human	genbank	57_37b	+1	validated	frame_shift_del	c.3	p.M1fs	0.049	NULL	HMMPfam_IFP_35_N,HMMPfam_NID	(deletion:cds_exon[41158965,41158985])	no_errors
IFI35	3430	genome.wustl.edu	37	17	41158967	41158967	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41158967	41158967	G	-	DEL	IFI35	NM_005533	human	genbank	57_37b	+1	validated	frame_shift_del	c.3	p.M1fs	0.049	NULL	HMMPfam_IFP_35_N,HMMPfam_NID	(deletion:cds_exon[41158965,41158985])	no_errors
IPO8	10526	genome.wustl.edu	37	12	30823923	30823923	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	30823923	30823923	G	T	SNP	IPO8	NM_006390	human	genbank	57_37b	-1	reviewed	silent	c.1017	p.T339	0.979	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N	-	no_errors
ISX	91464	genome.wustl.edu	37	22	35478527	35478527	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	35478527	35478527	G	A	SNP	ISX	NM_001008494	human	genbank	57_37b	+1	validated	silent	c.246	p.K82	0.669	superfamily_Homeodomain_like,HMMSmart_HOX	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ITGA1	3672	genome.wustl.edu	37	5	52243219	52243219	+	Silent	SNP	A	A	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52243219	52243219	A	T	SNP	ITGA1	NM_181501	human	genbank	57_37b	+1	reviewed	silent	c.3423	p.P1141	0.176	superfamily_SSF69179	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA	-	no_errors
KCNH5	27133	genome.wustl.edu	37	14	63174802	63174802	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	63174802	63174802	G	A	SNP	KCNH5	NM_139318	human	genbank	57_37b	-1	reviewed	silent	c.2391	p.V797	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
KIF3C	3797	genome.wustl.edu	37	2	26204304	26204304	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26204304	26204304	C	T	SNP	KIF3C	NM_002254	human	genbank	57_37b	-1	validated	silent	c.483	p.P161	0.137	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KLRC1	3821	genome.wustl.edu	37	12	10602545	10602545	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10602545	10602545	T	-	DEL	KLRC1	NM_002259	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.305	p.N102fs	0.004	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[10602513,10602566])	no_errors
KLRC1	3821	genome.wustl.edu	37	12	10602545	10602545	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10602545	10602545	T	-	DEL	KLRC1	NM_002259	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.305	p.N102fs	0.004	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[10602513,10602566])	no_errors
KSR2	283455	genome.wustl.edu	37	12	118293372	118293372	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	118293372	118293372	G	A	SNP	KSR2	NM_173598	human	genbank	57_37b	-1	validated	silent	c.246	p.P82	0.000	NULL	superfamily_Cysteine-rich domain,HMMSmart_SM00109,HMMPfam_C1_1,PatternScan_ZF_DAG_PE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LAMA5	3911	genome.wustl.edu	37	20	60889977	60889977	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60889977	60889977	G	A	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	nonsense	c.8074	p.Q2692*	0.904	HMMPfam_Laminin_II	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
LAMA5	3911	genome.wustl.edu	37	20	60889977	60889977	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-11A-22D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60889977	60889977	G	A	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	nonsense	c.8074	p.Q2692*	0.904	HMMPfam_Laminin_II	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
LCP2	3937	genome.wustl.edu	37	5	169697879	169697879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	169697879	169697879	C	T	SNP	LCP2	NM_005565	human	genbank	57_37b	-1	reviewed	missense	c.367	p.E123K	0.982	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23685871	23685871	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23685871	23685871	C	T	SNP	LOC283685	XM_002343322	human	genbank	57_37b	-1	model	missense	c.1540	p.E514K	0.000	NULL	NULL	-	no_errors
LRP12	29967	genome.wustl.edu	37	8	105509599	105509599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	105509599	105509599	C	T	SNP	LRP12	NM_013437	human	genbank	57_37b	-1	reviewed	missense	c.1181	p.R394H	1.000	superfamily_LDL receptor-like module,HMMSmart_SM00192	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
MIA2	117153	genome.wustl.edu	37	14	39722059	39722059	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	39722059	39722059	G	A	SNP	MIA2	NM_054024	human	genbank	57_37b	+1	validated	missense	c.1675	p.E559K	0.037	NULL	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9076968	9076968	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9076968	9076968	A	G	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.10478	p.I3493T	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
NLRP7	199713	genome.wustl.edu	37	19	55450823	55450823	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55450823	55450823	C	T	SNP	NLRP7	NM_001127255	human	genbank	57_37b	-1	reviewed	missense	c.1364	p.R455H	0.000	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
OR2M5	127059	genome.wustl.edu	37	1	248308750	248308750	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248308750	248308750	A	G	SNP	OR2M5	NM_001004690	human	genbank	57_37b	+1	provisional	missense	c.301	p.I101V	0.992	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR2T3	343173	genome.wustl.edu	37	1	248637013	248637013	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248637013	248637013	C	A	SNP	OR2T3	NM_001005495	human	genbank	57_37b	+1	provisional	missense	c.362	p.A121D	0.000	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR56A1	120796	genome.wustl.edu	37	11	6048719	6048719	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6048719	6048719	G	C	SNP	OR56A1	NM_001001917	human	genbank	57_37b	-1	validated	silent	c.216	p.L72	0.072	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR6C70	390327	genome.wustl.edu	37	12	55862990	55862990	+	Missense_Mutation	SNP	G	G	T	rs7295538	byCluster;byFrequency;by1000genomes	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55862990	55862990	G	T	SNP	OR6C70	NM_001005499	human	genbank	57_37b	-1	provisional	missense	c.933	p.D311E	0.002	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
OR9G4	283189	genome.wustl.edu	37	11	56510936	56510936	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56510936	56510936	A	G	SNP	OR9G4	NM_001005284	human	genbank	57_37b	-1	provisional	missense	c.352	p.F118L	0.999	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PALLD	23022	genome.wustl.edu	37	4	169433082	169433082	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	169433082	169433082	C	T	SNP	PALLD	NM_016081	human	genbank	57_37b	+1	reviewed	missense	c.427	p.R143C	0.016	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,PatternScan_DEHYDRATASE_SER_THR	-	no_errors
PER2	8864	genome.wustl.edu	37	2	239164504	239164504	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239164504	239164504	G	A	SNP	PER2	NM_022817	human	genbank	57_37b	-1	reviewed	missense	c.2114	p.A705V	0.000	NULL	HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	no_errors
PLIN1	5346	genome.wustl.edu	37	15	90210242	90210242	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90210242	90210242	C	G	SNP	PLIN1	NM_001145311	human	genbank	57_37b	-1	reviewed	silent	c.1134	p.G378	0.007	HMMPfam_Perilipin	HMMPfam_Perilipin	-	no_errors
POU6F2	11281	genome.wustl.edu	37	7	39379419	39379419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	39379419	39379419	C	T	SNP	POU6F2	NM_007252	human	genbank	57_37b	+1	reviewed	silent	c.690	p.P230	0.119	NULL	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
PPAPDC3	84814	genome.wustl.edu	37	9	134165688	134165688	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134165688	134165688	C	T	SNP	PPAPDC3	NM_032728	human	genbank	57_37b	+1	validated	missense	c.304	p.R102W	1.000	NULL	superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2	-	no_errors
RAPGEF1	2889	genome.wustl.edu	37	9	134514093	134514093	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134514093	134514093	C	T	SNP	RAPGEF1	NM_198679	human	genbank	57_37b	-1	reviewed	missense	c.583	p.V195M	0.997	NULL	superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,HMMSmart_RasGEF,HMMPfam_RasGEF,PatternScan_RASGEF	-	no_errors
RPP30	10556	genome.wustl.edu	37	10	92638822	92638822	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	92638822	92638822	A	T	SNP	RPP30	NM_001104546	human	genbank	57_37b	+1	validated	missense	c.273	p.R91S	1.000	superfamily_PHP domain-like,HMMPfam_RNase_P_p30	superfamily_PHP domain-like,HMMPfam_RNase_P_p30	-	no_errors
SCLT1	132320	genome.wustl.edu	37	4	129964598	129964598	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129964598	129964598	C	T	SNP	SCLT1	NM_144643	human	genbank	57_37b	-1	validated	silent	c.186	p.E62	1.000	NULL	NULL	-	no_errors
SIGLEC9	27180	genome.wustl.edu	37	19	51629007	51629007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51629007	51629007	C	T	SNP	SIGLEC9	NM_014441	human	genbank	57_37b	+1	provisional	missense	c.575	p.T192I	0.000	superfamily_SSF48726,HMMPfam_ig	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig	-	no_errors
SORCS1	114815	genome.wustl.edu	37	10	108434901	108434901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	108434901	108434901	C	T	SNP	SORCS1	NM_001013031	human	genbank	57_37b	-1	reviewed	missense	c.1846	p.E616K	1.000	superfamily_SSF110296,HMMSmart_VPS10	superfamily_SSF110296,HMMSmart_VPS10,HMMSmart_PKD,superfamily_PKD,HMMPfam_PKD	-	no_errors
TAS1R2	80834	genome.wustl.edu	37	1	19186120	19186120	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19186120	19186120	A	T	SNP	TAS1R2	NM_152232	human	genbank	57_37b	-1	validated	missense	c.35	p.F12Y	0.035	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822,HMMPfam_ANF_receptor,HMMPfam_NCD3G,superfamily_SSF57586,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115114129	115114129	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115114129	115114129	G	C	SNP	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	missense	c.1088	p.S363W	0.892	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578542	7578542	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578542	7578542	G	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.388	p.L130V	0.985	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRPM7	54822	genome.wustl.edu	37	15	50905926	50905926	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	50905926	50905926	G	C	SNP	TRPM7	NM_017672	human	genbank	57_37b	-1	validated	missense	c.1748	p.T583R	1.000	NULL	HMMPfam_Ion_trans,superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase	-	no_errors
TTBK1	84630	genome.wustl.edu	37	6	43225687	43225687	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43225687	43225687	G	A	SNP	TTBK1	NM_032538	human	genbank	57_37b	+1	validated	silent	c.999	p.Q333	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
UGT2B11	10720	genome.wustl.edu	37	4	69870734	69870734	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69870734	69870734	C	T	SNP	UGT2B11	ENST00000381096	human	ensembl	57_37b	-1	known	missense	c.1430	p.R477Q	0.923	HMMPfam_UDPGT	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
WDR13	64743	genome.wustl.edu	37	X	48458901	48458901	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48458901	48458901	A	G	SNP	WDR13	NM_017883	human	genbank	57_37b	+1	reviewed	missense	c.718	p.T240A	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZNF540	163255	genome.wustl.edu	37	19	38102566	38102566	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38102566	38102566	G	C	SNP	ZNF540	NM_152606	human	genbank	57_37b	+1	validated	missense	c.385	p.E129Q	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF652	22834	genome.wustl.edu	37	17	47376040	47376040	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15M-01A-11D-A12B-09	TCGA-E2-A15M-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	47376040	47376040	A	G	SNP	ZNF652	NM_001145365	human	genbank	57_37b	-1	validated	missense	c.1556	p.V519A	0.050	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
