Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACHE	43	genome.wustl.edu	37	7	100488658	100488658	+	Missense_Mutation	SNP	G	G	C	rs1799806	byCluster;byFrequency;by1000genomes	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100488658	100488658	G	C	SNP	ACHE	NM_015831	human	genbank	57_37b	-1	reviewed	missense	c.1775	p.P592R	0.993	NULL	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2,PatternScan_CARBOXYLESTERASE_B_1	-	
ADD2	119	genome.wustl.edu	37	2	70923448	70923448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	70923448	70923448	A	G	SNP	ADD2	NM_001617	human	genbank	57_37b	-1	reviewed	missense	c.403	p.C135R	1.000	superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II	superfamily_AraD-like aldolase/epimerase,HMMPfam_Aldolase_II	-	no_errors
ARHGAP15	55843	genome.wustl.edu	37	2	144193247	144193247	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	144193247	144193247	C	G	SNP	ARHGAP15	NM_018460	human	genbank	57_37b	+1	validated	missense	c.552	p.I184M	1.000	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
ARHGEF12	23365	genome.wustl.edu	37	11	120351050	120351050	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	120351050	120351050	A	T	SNP	ARHGEF12	NM_015313	human	genbank	57_37b	+1	reviewed	missense	c.4148	p.D1383V	1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RGS-like,superfamily_Regulator of G-protein signaling RGS,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
ARSF	416	genome.wustl.edu	37	X	3030432	3030432	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3030432	3030432	C	T	SNP	ARSF	NM_004042	human	genbank	57_37b	+1	reviewed	silent	c.1608	p.N536	0.001	superfamily_Alkaline phosphatase-like	superfamily_Alkaline phosphatase-like,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
ASAH1	427	genome.wustl.edu	37	8	17941525	17941525	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	17941525	17941525	C	A	SNP	ASAH1	NM_177924	human	genbank	57_37b	-1	reviewed	missense	c.43	p.A15S	0.000	NULL	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),HMMPfam_CBAH	-	no_errors
ASPH	444	genome.wustl.edu	37	8	62555969	62555969	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	62555969	62555969	C	T	SNP	ASPH	NM_004318	human	genbank	57_37b	-1	reviewed	missense	c.733	p.D245N	0.002	HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452	HMMPfam_Asp-B-Hydro_N,superfamily_SSF48452,HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
ATXN8OS	6315	genome.wustl.edu	37	13	70681873	70681873	+	RNA	SNP	A	G	G	rs3751428	byCluster;byFrequency;by1000genomes	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	70681873	70681873	A	G	SNP	ATXN8OS	NR_002717	human	genbank	57_37b	+1	reviewed	rna	NULL	NULL	0.000	-	-	-	
BAT2L1	0	genome.wustl.edu	37	9	134354682	134354682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134354682	134354682	G	A	SNP	BAT2L1	NM_013318	human	genbank	57_37b	+1	validated	missense	c.4802	p.R1601Q	1.000	NULL	HMMPfam_BAT2_N	-	no_errors
BPIL3	128859	genome.wustl.edu	37	20	31631125	31631125	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	31631125	31631125	G	A	SNP	BPIL3	NM_174897	human	genbank	57_37b	+1	validated	silent	c.1281	p.P427	0.707	superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	PatternScan_LBP_BPI_CETP,superfamily_Bactericidal_perm-incr_a/b_dom,HMMPfam_LBP_BPI_CETP,HMMSmart_BPI1,HMMSmart_BPI2,HMMPfam_LBP_BPI_CETP_C	-	no_errors
C1orf49	84066	genome.wustl.edu	37	1	178490396	178490396	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	178490396	178490396	C	T	SNP	C1orf49	NM_032126	human	genbank	57_37b	+1	validated	missense	c.583	p.R195W	0.962	NULL	NULL	-	no_errors
C3orf42	84657	genome.wustl.edu	37	3	10327073	10327073	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	10327073	10327073	G	A	SNP	C3orf42	NR_026829	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
CADPS	8618	genome.wustl.edu	37	3	62467428	62467428	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	62467428	62467428	G	A	SNP	CADPS	NM_003716	human	genbank	57_37b	-1	reviewed	missense	c.3143	p.P1048L	1.000	NULL	HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041	-	no_errors
CSNK1A1L	122011	genome.wustl.edu	37	13	37678978	37678978	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	37678978	37678978	G	T	SNP	CSNK1A1L	NM_145203	human	genbank	57_37b	-1	validated	missense	c.416	p.P139Q	1.000	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CXCR3	2833	genome.wustl.edu	37	X	70836846	70836846	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70836846	70836846	A	T	SNP	CXCR3	NM_001504	human	genbank	57_37b	-1	reviewed	missense	c.476	p.L159H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
DCAF8	50717	genome.wustl.edu	37	1	160210035	160210035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160210035	160210035	G	A	SNP	DCAF8	NM_015726	human	genbank	57_37b	-1	reviewed	missense	c.175	p.R59C	0.996	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
DCI	1632	genome.wustl.edu	37	16	2301520	2301520	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2301520	2301520	G	C	SNP	DCI	NM_001919	human	genbank	57_37b	-1	reviewed	silent	c.48	p.R16	0.000	NULL	superfamily_ClpP/crotonase,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE	-	no_errors
DEDD2	162989	genome.wustl.edu	37	19	42703632	42703632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42703632	42703632	C	T	SNP	DEDD2	NM_133328	human	genbank	57_37b	-1	provisional	silent	c.939	p.L313	0.996	NULL	superfamily_DEATH domain,HMMSmart_SM00031,HMMPfam_DED	-	no_errors
DLGAP4	22839	genome.wustl.edu	37	20	35064600	35064600	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	35064600	35064600	G	A	SNP	DLGAP4	NM_014902	human	genbank	57_37b	+1	reviewed	missense	c.1088	p.R363H	0.997	NULL	HMMPfam_GKAP	-	no_errors
ELF3	1999	genome.wustl.edu	37	1	201980286	201980286	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201980286	201980286	A	G	SNP	ELF3	NM_001114309	human	genbank	57_37b	+1	validated	missense	c.22	p.S8G	0.998	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	-	no_errors
ENSG00000130612	0	genome.wustl.edu	37	19	41399887	41399887	+	Missense_Mutation	SNP	A	G	G	rs12609982	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41399887	41399887	A	G	SNP	ENSG00000130612	ENST00000433461	human	ensembl	57_37b	+1	known	missense	c.437	p.Q146R	0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	
ENSG00000214666	0	genome.wustl.edu	37	6	44240764	44240764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44240764	44240764	C	T	SNP	ENSG00000214666	ENST00000371508	human	ensembl	57_37b	+1	known	silent	c.453	p.F151	0.000	NULL	PatternScan_CARBOXYPEPT_ZN_2	-	no_errors
FKBP3	2287	genome.wustl.edu	37	14	45590698	45590698	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	45590698	45590698	A	G	SNP	FKBP3	NM_002013	human	genbank	57_37b	-1	reviewed	silent	c.444	p.N148	1.000	superfamily_FKBP-like,HMMPfam_FKBP_C	superfamily_FKBP-like,HMMPfam_FKBP_C	-	no_errors
GCH1	2643	genome.wustl.edu	37	14	55369216	55369216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	55369216	55369216	C	T	SNP	GCH1	NM_000161	human	genbank	57_37b	-1	reviewed	missense	c.166	p.E56K	0.738	superfamily_Tetrahydrobiopterin biosynthesis enzymes-like	superfamily_Tetrahydrobiopterin biosynthesis enzymes-like,PatternScan_GTP_CYCLOHYDROL_1_1,HMMPfam_GTP_cyclohydroI,PatternScan_GTP_CYCLOHYDROL_1_2	-	no_errors
KCTD9	54793	genome.wustl.edu	37	8	25292958	25292958	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	25292958	25292958	A	G	SNP	KCTD9	NM_017634	human	genbank	57_37b	-1	validated	missense	c.734	p.L245S	1.000	HMMPfam_Pentapeptide	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,HMMPfam_Pentapeptide	-	no_errors
KIFC1	3833	genome.wustl.edu	37	6	33374648	33374648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33374648	33374648	C	T	SNP	KIFC1	NM_002263	human	genbank	57_37b	+1	validated	missense	c.1973	p.S658F	1.000	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin	superfamily_SSF52540,HMMSmart_KISc,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LRRC8E	80131	genome.wustl.edu	37	19	7964376	7964376	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	7964376	7964376	C	T	SNP	LRRC8E	NM_025061	human	genbank	57_37b	+1	validated	silent	c.969	p.Y323	0.126	NULL	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	-	no_errors
MTMR4	9110	genome.wustl.edu	37	17	56569882	56569882	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56569882	56569882	G	A	SNP	MTMR4	NM_004687	human	genbank	57_37b	-1	validated	missense	c.3400	p.H1134Y	1.000	HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
NFE2L3	9603	genome.wustl.edu	37	7	26225181	26225182	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	26225181	26225182	-	AA	INS	NFE2L3	NM_004289	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1863_1864	p.R621fs	0.000:0.000	HMMPfam_bZIP_1,HMMSmart_BRLZ	superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1,HMMSmart_BRLZ,PatternScan_BZIP_BASIC	-	no_errors
NOM1	64434	genome.wustl.edu	37	7	156742517	156742517	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	156742517	156742517	G	A	SNP	NOM1	NM_138400	human	genbank	57_37b	+1	provisional	missense	c.86	p.G29E	0.007	NULL	superfamily_ARM-type_fold,HMMPfam_MIF4G,HMMSmart_MIF4G,HMMPfam_MA3,HMMSmart_MA3	-	no_errors
OPRD1	4985	genome.wustl.edu	37	1	29189481	29189481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29189481	29189481	G	A	SNP	OPRD1	NM_000911	human	genbank	57_37b	+1	validated	missense	c.805	p.A269T	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR13D1	286365	genome.wustl.edu	37	9	107457129	107457129	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107457129	107457129	G	T	SNP	OR13D1	NM_001004484	human	genbank	57_37b	+1	provisional	nonsense	c.427	p.E143*	0.286	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR1N1	138883	genome.wustl.edu	37	9	125288840	125288840	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	125288840	125288840	C	T	SNP	OR1N1	NM_012363	human	genbank	57_37b	-1	provisional	missense	c.733	p.V245I	0.358	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OTUD4	54726	genome.wustl.edu	37	4	146062555	146062555	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	146062555	146062555	G	A	SNP	OTUD4	NM_001102653	human	genbank	57_37b	-1	reviewed	nonsense	c.1864	p.Q622*	1.000	NULL	superfamily_SSF54001,HMMPfam_OTU	-	no_errors
PCDHAC2	56134	genome.wustl.edu	37	5	140346468	140346468	+	Silent	SNP	T	A	A	rs155364	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140346468	140346468	T	A	SNP	PCDHAC2	NM_018899	human	genbank	57_37b	+1	reviewed	silent	c.117	p.P39	0.978	HMMSmart_SM00112,superfamily_Cadherin-like	HMMSmart_SM00112,superfamily_Cadherin-like,HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	
PCDHB18	54660	genome.wustl.edu	37	5	140615827	140615827	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140615827	140615827	C	T	SNP	PCDHB18	ENST00000274705	human	ensembl	57_37b	+1	known	silent	c.1542	p.N514	0.992	superfamily_Cadherin	HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
PCGF5	84333	genome.wustl.edu	37	10	93021117	93021117	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	93021117	93021117	G	A	SNP	PCGF5	NM_032373	human	genbank	57_37b	+1	provisional	missense	c.509	p.R170H	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
PHF15	23338	genome.wustl.edu	37	5	133902109	133902109	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	133902109	133902109	G	A	SNP	PHF15	NM_015288	human	genbank	57_37b	+1	provisional	missense	c.1273	p.D425N	1.000	NULL	HMMPfam_EPL1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
POU5F2	134187	genome.wustl.edu	37	5	93077199	93077199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	93077199	93077199	G	A	SNP	POU5F2	NM_153216	human	genbank	57_37b	-1	provisional	missense	c.71	p.P24L	0.001	NULL	HMMPfam_Pou,HMMSmart_POU,superfamily_Lambda_like_DNA,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
RGS12	6002	genome.wustl.edu	37	4	3441258	3441258	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3441258	3441258	C	G	SNP	RGS12	NM_198229	human	genbank	57_37b	+1	reviewed	silent	c.4191	p.P1397	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,HMMPfam_GoLoco,HMMSmart_SM00390	-	no_errors
RNF207	388591	genome.wustl.edu	37	1	6271954	6271954	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6271954	6271954	G	A	SNP	RNF207	ENST00000377948	human	ensembl	57_37b	+1	known	missense	c.289	p.A97T	0.306	NULL	NULL	-	no_errors
SCNN1D	6339	genome.wustl.edu	37	1	1222976	1222976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1222976	1222976	G	A	SNP	SCNN1D	NM_001130413	human	genbank	57_37b	+1	validated	missense	c.1105	p.G369R	0.053	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
SIGMAR1	10280	genome.wustl.edu	37	9	34635777	34635777	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34635777	34635777	C	T	SNP	SIGMAR1	NM_005866	human	genbank	57_37b	-1	reviewed	missense	c.524	p.R175Q	1.000	HMMPfam_ERG2_Sigma1R	HMMPfam_ERG2_Sigma1R	-	no_errors
SLC4A1	6521	genome.wustl.edu	37	17	42330650	42330650	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42330650	42330650	G	T	SNP	SLC4A1	NM_000342	human	genbank	57_37b	-1	reviewed	missense	c.2147	p.A716D	0.014	HMMPfam_HCO3_cotransp	superfamily_PTrfase/Anion_transptr,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
TRBC1	0	genome.wustl.edu	37	7	142498959	142498959	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142498959	142498959	G	A	SNP	TRBC1	ENST00000445121	human	ensembl	57_37b	+1	known	missense	c.644	p.R215H	1.000	superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
TRIM58	25893	genome.wustl.edu	37	1	248039412	248039412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248039412	248039412	G	A	SNP	TRIM58	NM_015431	human	genbank	57_37b	+1	validated	missense	c.1082	p.G361E	0.982	HMMPfam_SPRY,HMMSmart_SPRY	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
WDR4	10785	genome.wustl.edu	37	21	44279796	44279796	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	44279796	44279796	G	A	SNP	WDR4	NM_018669	human	genbank	57_37b	-1	reviewed	silent	c.603	p.P201	0.036	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
WNT7A	7476	genome.wustl.edu	37	3	13860569	13860569	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13860569	13860569	A	T	SNP	WNT7A	NM_004625	human	genbank	57_37b	-1	reviewed	missense	c.922	p.C308S	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZIC3	7547	genome.wustl.edu	37	X	136649808	136649808	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	136649808	136649808	C	A	SNP	ZIC3	NM_003413	human	genbank	57_37b	+1	reviewed	silent	c.958	p.R320	1.000	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF699	374879	genome.wustl.edu	37	19	9407034	9407034	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A15R-01A-11D-A10Y-09	TCGA-E2-A15R-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9407034	9407034	T	-	DEL	ZNF699	NM_198535	human	genbank	57_37b	-1	provisional	frame_shift_del	c.1046	p.H349fs	0.003	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	(deletion:cds_exon[9406151,9407609])	no_errors
