GDAC_clinicalDataPickerPipeline Execution Log 1:45 PM Fri Sep 14, '12

Running as user: cgaadm_deadline

GDAC_clinicalDataPicker1 stage2File file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/KIRP/1708604/0.GDAC_clinicalDataMerger.Finished/KIRP.clin.merged.txt
GDAC_clinicalDataPicker1 selectFile file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_kirp.tsv
GDAC_clinicalDataPicker1 nodeColumn 1
GDAC_clinicalDataPicker1 outPrefix KIRP
Execution Times:
Submitted: 13:45:58 14-09-12
Completed:
Elapsed: 00 hrs 10 mins 27 secs

step 1. GDAC_clinicalDataPicker [id: 166094] Picks out the clinical paramters of interest

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
stage2File file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/KIRP/1708604/0.GDAC_clinicalDataMerger.Finished/KIRP.clin.merged.txt
selectFile file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_kirp.tsv
nodeColumn 1
outPrefix KIRP
Output Files:
 KIRP.clin.merged.picked.txt
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 13:45:59 14-09-12
Completed: 13:55:20 14-09-12
Elapsed: 00 hrs 09 mins 21 secs

step 2. GDAC_clinicalDataPickerReport [id: 166095] Clinical data report

    urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
picked KIRP.clin.merged.picked.txt
Output Files:
 nozzle.html
 diagram_clinic.png
 tier1Data.txt
 report_tcga.html.RData
 report_public.html.html
 nozzle.RData
 paramStats.txt
 report_public.html.RData
 tier1_clinical_variables.txt
 report_private.html.RData
 report_private.html.html
 report_tcga.html.html
 .lsf.out
 stdout.txt
Execution Times:
Submitted: 13:45:59 14-09-12
Completed: 13:56:24 14-09-12
Elapsed: 00 hrs 10 mins 25 secs