Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-DD-A116-01A-11R-A131-07	TCGA-DD-A116-01A-11R-A131-07	UNCID_410546.TCGA-DD-A116-01A-11R-A131-07.110620_UNC14-SN744_0133_BC03GVABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A119-01A-11R-A131-07	TCGA-DD-A119-01A-11R-A131-07	UNCID_420919.TCGA-DD-A119-01A-11R-A131-07.110606_UNC12-SN629_0091_BC03JHABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-CC-5264-01A-01R-A131-07	TCGA-CC-5264-01A-01R-A131-07	UNCID_420947.TCGA-CC-5264-01A-01R-A131-07.110606_UNC12-SN629_0091_BC03JHABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-CC-5263-01A-01R-A131-07	TCGA-CC-5263-01A-01R-A131-07	UNCID_376823.TCGA-CC-5263-01A-01R-A131-07.110525_UNC12-SN629_0087_BC03HWABXX.5.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A1EE-01A-11R-A131-07	TCGA-DD-A1EE-01A-11R-A131-07	UNCID_442130.TCGA-DD-A1EE-01A-11R-A131-07.110628_UNC10-SN254_0238_AC03J5ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A11B-01A-11R-A131-07	TCGA-DD-A11B-01A-11R-A131-07	UNCID_502693.TCGA-DD-A11B-01A-11R-A131-07.110901_UNC12-SN629_0127_BC025UABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-BC-A10Q-01A-11R-A131-07	TCGA-BC-A10Q-01A-11R-A131-07	UNCID_477168.TCGA-BC-A10Q-01A-11R-A131-07.110629_UNC14-SN744_0136_AD0CV5ABXX.2.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A118-01A-11R-A131-07	TCGA-DD-A118-01A-11R-A131-07	UNCID_376787.TCGA-DD-A118-01A-11R-A131-07.110525_UNC12-SN629_0087_BC03HWABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-BC-A112-01A-11R-A131-07	TCGA-BC-A112-01A-11R-A131-07	UNCID_424658.TCGA-BC-A112-01A-11R-A131-07.110819_UNC11-SN627_0140_BB01T2ABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A1EH-01A-11R-A131-07	TCGA-DD-A1EH-01A-11R-A131-07	UNCID_502891.TCGA-DD-A1EH-01A-11R-A131-07.110901_UNC12-SN629_0127_BC025UABXX.7.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-BC-A10Z-01A-11R-A131-07	TCGA-BC-A10Z-01A-11R-A131-07	UNCID_420921.TCGA-BC-A10Z-01A-11R-A131-07.110606_UNC12-SN629_0091_BC03JHABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A1EC-01A-21R-A131-07	TCGA-DD-A1EC-01A-21R-A131-07	UNCID_420920.TCGA-DD-A1EC-01A-21R-A131-07.110606_UNC12-SN629_0091_BC03JHABXX.3.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-DD-A1EB-01A-11R-A131-07	TCGA-DD-A1EB-01A-11R-A131-07	UNCID_410300.TCGA-DD-A1EB-01A-11R-A131-07.110620_UNC14-SN744_0133_BC03GVABXX.8.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-BC-4073-01B-02R-A131-07	TCGA-BC-4073-01B-02R-A131-07	UNCID_477178.TCGA-BC-4073-01B-02R-A131-07.110629_UNC14-SN744_0136_AD0CV5ABXX.1.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-BC-A10S-01A-22R-A131-07	TCGA-BC-A10S-01A-22R-A131-07	UNCID_477238.TCGA-BC-A10S-01A-22R-A131-07.110629_UNC14-SN744_0136_AD0CV5ABXX.6.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-BC-A10R-01A-11R-A131-07	TCGA-BC-A10R-01A-11R-A131-07	UNCID_514386.TCGA-BC-A10R-01A-11R-A131-07.110629_UNC14-SN744_0136_AD0CV5ABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
TCGA-CC-A1HT-01A-11R-A131-07	TCGA-CC-A1HT-01A-11R-A131-07	UNCID_502955.TCGA-CC-A1HT-01A-11R-A131-07.110901_UNC12-SN629_0127_BC025UABXX.4.trimmed.annotated.translated_to_genomic.spljxn.quantification.txt	unc.edu_LIHC.IlluminaHiSeq_RNASeq.Level_3.1.0.0	Level_3	yes	broad.mit.edu:mirror_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:28	Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data_2012091300	LIHC.rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.data.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_LIHC.Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data.Level_3.2012091300.0.0	yes
