writing sdrf to BLCA.merger.sdrf.txt

------------------------------------------------------------------
2012-10-05 16:18:29.607977
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/BLCA/1781053/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/BLCA/1781053/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BL-A0C8-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BL-A13I-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BL-A13J-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A0S7-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A0YX-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20J-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20N-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20O-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20P-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20Q-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20T-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20U-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20V-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-BT-A20W-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0EZ-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F0-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F1-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F6-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-C4-A0F7-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CF-A1HR-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CF-A1HS-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CU-A0YN-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CU-A0YO-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-CU-A0YR-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1A3-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1A5-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1A7-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt

md5sum /xchip/gdac_data/normalized/diced/blca/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_BLCA.IlluminaGA_DNASeq.Level_2.2.2.0/TCGA-DK-A1AB-01.wig.txt
('', None)
0
0120da0cacdefca720932a63db42e101
It is in the dictionary
TCGA-BL-A0C8-01.wig.txt
Make a softlink is done.


