Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTSL4	54507	genome.wustl.edu	37	1	150526406	150526406	+	Silent	SNP	C	C	T	rs6681639	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150526406	150526406	C	T	SNP	ADAMTSL4	NM_019032	human	genbank	57_37b	+1	reviewed	silent	c.939	p.G313	0.066	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC	-	
ARHGAP18	93663	genome.wustl.edu	37	6	129937374	129937374	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	129937374	129937374	G	A	SNP	ARHGAP18	NM_033515	human	genbank	57_37b	-1	validated	missense	c.1027	p.P343S	1.000	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
CACNA1E	777	genome.wustl.edu	37	1	181726119	181726119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181726119	181726119	C	T	SNP	CACNA1E	NM_000721	human	genbank	57_37b	+1	reviewed	missense	c.4186	p.R1396C	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68844098	68844098	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68844098	68844098	A	G	SNP	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	splice_site	c.688-2	e6-2	1.000	-	-	-	no_errors
CIT	11113	genome.wustl.edu	37	12	120156088	120156088	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120156088	120156088	G	A	SNP	CIT	NM_007174	human	genbank	57_37b	-1	validated	missense	c.4004	p.P1335L	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,PatternScan_CPSASE_2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors
CTAG2	30848	genome.wustl.edu	37	X	153881613	153881613	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153881613	153881613	G	A	SNP	CTAG2	NM_020994	human	genbank	57_37b	-1	validated	silent	c.177	p.G59	0.000	NULL	HMMPfam_Pcc1	-	no_errors
CTGF	1490	genome.wustl.edu	37	6	132270681	132270681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	132270681	132270681	C	T	SNP	CTGF	NM_001901	human	genbank	57_37b	-1	reviewed	missense	c.773	p.R258H	1.000	HMMPfam_Cys_knot	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
DDC	1644	genome.wustl.edu	37	7	50605566	50605566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	50605566	50605566	C	T	SNP	DDC	NM_000790	human	genbank	57_37b	-1	reviewed	missense	c.427	p.V143M	1.000	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC	-	no_errors
DMKN	93099	genome.wustl.edu	37	19	36002410	36002412	+	In_Frame_Del	DEL	CTG	CTG	-	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36002410	36002412	CTG	-	DEL	DMKN	NM_033317	human	genbank	57_37b	-1	reviewed	in_frame_del	c.821_819	p.S274in_frame_del	0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[36002313,36002495])	no_errors
GMCL1L	64396	genome.wustl.edu	37	5	177612634	177612634	+	RNA	SNP	A	A	C	rs7715618	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177612634	177612634	A	C	SNP	GMCL1L	NR_003281	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.103	-	-	-	
KANK3	256949	genome.wustl.edu	37	19	8398975	8398975	+	Missense_Mutation	SNP	C	C	T	rs2913955	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8398975	8398975	C	T	SNP	KANK3	NM_198471	human	genbank	57_37b	-1	validated	missense	c.1453	p.A485T	0.002	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	
LOC100288820	0	genome.wustl.edu	37	1	233972031	233972031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233972031	233972031	G	A	SNP	LOC100288820	XM_002342176	human	genbank	57_37b	-1	model	missense	c.197	p.P66L	0.991	HMMSmart_SM00226,HMMPfam_LMWPc,superfamily_Phosphotyrosine protein phosphatases I	HMMSmart_SM00226,HMMPfam_LMWPc,superfamily_Phosphotyrosine protein phosphatases I	-	no_errors
NARS2	79731	genome.wustl.edu	37	11	78204212	78204212	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	78204212	78204212	G	C	SNP	NARS2	NM_024678	human	genbank	57_37b	-1	validated	missense	c.719	p.P240R	1.000	HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases	superfamily_Nucleic acid-binding proteins,HMMPfam_tRNA_anti,HMMPfam_tRNA-synt_2,superfamily_Class II aaRS and biotin synthetases	-	no_errors
OR4N4	283694	genome.wustl.edu	37	15	22382595	22382595	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22382595	22382595	A	G	SNP	OR4N4	NM_001005241	human	genbank	57_37b	+1	provisional	silent	c.123	p.G41	0.998	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936095	178936095	A	G	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1637	p.Q546R	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIP5K1C	23396	genome.wustl.edu	37	19	3653547	3653547	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3653547	3653547	T	C	SNP	PIP5K1C	NM_012398	human	genbank	57_37b	-1	reviewed	missense	c.662	p.Y221C	1.000	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	-	no_errors
RAD21	5885	genome.wustl.edu	37	8	117862955	117862955	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	117862955	117862955	C	G	SNP	RAD21	NM_006265	human	genbank	57_37b	-1	reviewed	missense	c.1522	p.E508Q	1.000	NULL	HMMPfam_Rad21_Rec8_N,HMMPfam_Rad21_Rec8	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179467306	179467306	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179467306	179467306	G	T	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.47119	p.P15707T	0.922	HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
ZNF45	7596	genome.wustl.edu	37	19	44418767	44418767	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EW-01A-21D-A10Y-09	TCGA-A2-A0EW-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44418767	44418767	T	C	SNP	ZNF45	NM_003425	human	genbank	57_37b	-1	validated	missense	c.821	p.K274R	1.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
