Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AKR7A3	22977	genome.wustl.edu	37	1	19612756	19612756	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19612756	19612756	G	C	SNP	AKR7A3	NM_012067	human	genbank	57_37b	-1	validated	missense	c.325	p.L109V	1.000	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red	-	no_errors
ARHGEF17	9828	genome.wustl.edu	37	11	73022275	73022275	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73022275	73022275	C	T	SNP	ARHGEF17	NM_014786	human	genbank	57_37b	+1	validated	silent	c.2592	p.P864	1.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	-	no_errors
AWAT1	158833	genome.wustl.edu	37	X	69459689	69459689	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	69459689	69459689	G	A	SNP	AWAT1	NM_001013579	human	genbank	57_37b	+1	reviewed	missense	c.737	p.R246H	0.000	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
BMS1	9790	genome.wustl.edu	37	10	43287948	43287948	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43287948	43287948	G	A	SNP	BMS1	NM_014753	human	genbank	57_37b	+1	reviewed	missense	c.787	p.D263N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AARP2CN,HMMSmart_SM00785	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AARP2CN,HMMSmart_SM00785,HMMPfam_DUF663	-	no_errors
CAPSL	133690	genome.wustl.edu	37	5	35921198	35921198	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	35921198	35921198	G	A	SNP	CAPSL	NM_001042625	human	genbank	57_37b	-1	validated	nonsense	c.25	p.R9*	1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand	-	no_errors
CASR	846	genome.wustl.edu	37	3	122003481	122003481	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	122003481	122003481	G	A	SNP	CASR	NM_000388	human	genbank	57_37b	+1	reviewed	missense	c.2680	p.V894I	1.000	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
CHD8	57680	genome.wustl.edu	37	14	21871620	21871620	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21871620	21871620	G	A	SNP	CHD8	NM_020920	human	genbank	57_37b	-1	validated	silent	c.2673	p.I891	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
DOCK8	81704	genome.wustl.edu	37	9	289557	289557	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	289557	289557	G	C	SNP	DOCK8	NM_203447	human	genbank	57_37b	+1	validated	missense	c.176	p.R59P	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117375739	117375739	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117375739	117375739	C	T	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	silent	c.2262	p.V754	0.843	superfamily_Immunoglobulin,HMMPfam_I-set	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
EML3	256364	genome.wustl.edu	37	11	62370155	62370155	+	Missense_Mutation	SNP	G	G	A	rs71490394	byCluster;byFrequency;by1000genomes	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62370155	62370155	G	A	SNP	EML3	ENST00000439994	human	ensembl	57_37b	-1	known	missense	c.206	p.A69V	0.000	NULL	NULL	-	
ENG	2022	genome.wustl.edu	37	9	130605384	130605384	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130605384	130605384	C	A	SNP	ENG	NM_001114753	human	genbank	57_37b	-1	reviewed	nonsense	c.208	p.E70*	0.688	NULL	HMMPfam_Zona_pellucida	-	no_errors
FGFR3	2261	genome.wustl.edu	37	4	1808375	1808375	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1808375	1808375	C	T	SNP	FGFR3	ENST00000481110	human	ensembl	57_37b	+1	known	missense	c.2062	p.P688S	1.000	HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FOXD4	2298	genome.wustl.edu	37	9	117506	117506	+	Missense_Mutation	SNP	G	G	A	rs75709472	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117506	117506	G	A	SNP	FOXD4	NM_207305	human	genbank	57_37b	-1	validated	missense	c.614	p.P205L	0.737	NULL	HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	
FRYL	285527	genome.wustl.edu	37	4	48542836	48542836	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	48542836	48542836	T	C	SNP	FRYL	NM_015030	human	genbank	57_37b	-1	validated	silent	c.5829	p.R1943	0.157	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
GRID1	2894	genome.wustl.edu	37	10	87407077	87407077	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	87407077	87407077	C	T	SNP	GRID1	NM_017551	human	genbank	57_37b	-1	reviewed	missense	c.2075	p.R692Q	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
GRID2IP	392862	genome.wustl.edu	37	7	6591008	6591008	+	Silent	SNP	C	C	T	rs73059373	byCluster;byFrequency;by1000genomes	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6591008	6591008	C	T	SNP	GRID2IP	NM_001145118	human	genbank	57_37b	-1	validated	silent	c.60	p.R20	1.000	superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	
GRM8	2918	genome.wustl.edu	37	7	126173066	126173066	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	126173066	126173066	G	A	SNP	GRM8	NM_000845	human	genbank	57_37b	-1	reviewed	silent	c.2370	p.T790	1.000	HMMPfam_7tm_3	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
HNRNPA2B1	3181	genome.wustl.edu	37	7	26233303	26233303	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	26233303	26233303	C	A	SNP	HNRNPA2B1	NM_031243	human	genbank	57_37b	-1	reviewed	nonsense	c.769	p.G257*	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
IL28A	282616	genome.wustl.edu	37	19	39759482	39759482	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39759482	39759482	G	T	SNP	IL28A	NM_172138	human	genbank	57_37b	+1	reviewed	missense	c.176	p.R59M	0.560	NULL	NULL	-	no_errors
KCNG1	3755	genome.wustl.edu	37	20	49621081	49621081	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	49621081	49621081	C	T	SNP	KCNG1	NM_002237	human	genbank	57_37b	-1	reviewed	missense	c.1037	p.R346Q	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
KIAA1383	54627	genome.wustl.edu	37	1	232940798	232940798	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	232940798	232940798	G	A	SNP	KIAA1383	NM_019090	human	genbank	57_37b	+1	validated	nonsense	c.29	p.W10*	0.000	NULL	NULL	-	no_errors
KIT	3815	genome.wustl.edu	37	4	55565832	55565832	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55565832	55565832	C	T	SNP	KIT	NM_000222	human	genbank	57_37b	+1	reviewed	missense	c.656	p.A219V	0.003	superfamily_SSF48726	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMSmart_IG,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
KRT6C	140446	genome.wustl.edu	37	12	52867484	52867484	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52867484	52867484	C	T	SNP	KRT6C	NM_173086	human	genbank	57_37b	-1	reviewed	missense	c.38	p.S13N	0.004	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC100289293	0	genome.wustl.edu	37	2	132724061	132724061	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	132724061	132724061	G	A	SNP	LOC100289293	XM_002342261	human	genbank	57_37b	-1	model	missense	c.281	p.T94M	0.032	NULL	NULL	-	no_errors
MAST1	22983	genome.wustl.edu	37	19	12979955	12979955	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12979955	12979955	A	G	SNP	MAST1	NM_014975	human	genbank	57_37b	+1	validated	missense	c.2849	p.D950G	1.000	NULL	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
MCTP2	55784	genome.wustl.edu	37	15	94983504	94983504	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	94983504	94983504	G	T	SNP	MCTP2	NM_018349	human	genbank	57_37b	+1	validated	missense	c.2185	p.V729F	0.098	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
MLXIP	22877	genome.wustl.edu	37	12	122617989	122617989	+	Missense_Mutation	SNP	A	A	G	rs7978353	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	122617989	122617989	A	G	SNP	MLXIP	ENST00000319080	human	ensembl	57_37b	+1	known	missense	c.1187	p.E396G	0.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	
MPP3	4356	genome.wustl.edu	37	17	41888564	41888564	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	41888564	41888564	C	G	SNP	MPP3	NM_001932	human	genbank	57_37b	-1	reviewed	missense	c.1265	p.R422T	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	HMMSmart_SM00569,HMMPfam_L27,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin	-	no_errors
MTNR1B	4544	genome.wustl.edu	37	11	92714860	92714860	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92714860	92714860	C	A	SNP	MTNR1B	NM_005959	human	genbank	57_37b	+1	reviewed	silent	c.471	p.T157	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
NLRC3	197358	genome.wustl.edu	37	16	3611702	3611702	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3611702	3611702	C	A	SNP	NLRC3	NM_178844	human	genbank	57_37b	-1	validated	splice_site	c.2015+1	e3+1	1.000	-	-	-	no_errors
OAZ2	4947	genome.wustl.edu	37	15	64995230	64995230	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64995230	64995230	G	T	SNP	OAZ2	NM_002537	human	genbank	57_37b	-1	reviewed	missense	c.18	p.D6E	1.000	NULL	HMMPfam_ODC_AZ,PatternScan_EF_HAND_1,PatternScan_ODC_AZ	-	no_errors
OR4L1	122742	genome.wustl.edu	37	14	20528300	20528300	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20528300	20528300	C	T	SNP	OR4L1	NM_001004717	human	genbank	57_37b	+1	provisional	silent	c.97	p.L33	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR56A4	120793	genome.wustl.edu	37	11	6023911	6023911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6023911	6023911	C	A	SNP	OR56A4	NM_001005179	human	genbank	57_37b	-1	provisional	missense	c.468	p.M156I	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PCDHGB1	56104	genome.wustl.edu	37	5	140730761	140730761	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140730761	140730761	G	T	SNP	PCDHGB1	NM_018922	human	genbank	57_37b	+1	reviewed	missense	c.934	p.V312L	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLA2G4A	5321	genome.wustl.edu	37	1	186925327	186925327	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186925327	186925327	C	G	SNP	PLA2G4A	NM_024420	human	genbank	57_37b	+1	reviewed	missense	c.1430	p.A477G	0.038	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B,PatternScan_PPASE,PatternScan_SUBTILASE_ASP	-	no_errors
POM121L12	285877	genome.wustl.edu	37	7	53103840	53103840	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	53103840	53103840	G	A	SNP	POM121L12	NM_182595	human	genbank	57_37b	+1	validated	missense	c.476	p.R159H	0.000	NULL	NULL	-	no_errors
RAB40A	142684	genome.wustl.edu	37	X	102755366	102755366	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	102755366	102755366	G	A	SNP	RAB40A	NM_080879	human	genbank	57_37b	-1	validated	nonsense	c.319	p.R107*	0.996	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,HMMSmart_SOCS,HMMPfam_SOCS_box	-	no_errors
RPTN	126638	genome.wustl.edu	37	1	152128071	152128071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152128071	152128071	G	A	SNP	RPTN	NM_001122965	human	genbank	57_37b	-1	validated	missense	c.1504	p.P502S	0.000	NULL	superfamily_EF-hand,HMMPfam_S_100,HMMPfam_efhand,PatternScan_S100_CABP,PatternScan_EF_HAND_1	-	no_errors
RSAD2	91543	genome.wustl.edu	37	2	7018164	7018164	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	7018164	7018164	A	C	SNP	RSAD2	NM_080657	human	genbank	57_37b	+1	validated	missense	c.233	p.H78P	1.000	superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM	superfamily_SSF102114,HMMSmart_Elp3,HMMPfam_Radical_SAM	-	no_errors
RXFP1	59350	genome.wustl.edu	37	4	159559201	159559201	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	159559201	159559201	A	-	DEL	RXFP1	NM_021634	human	genbank	57_37b	+1	provisional	frame_shift_del	c.1013	p.Q338fs	1.000	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_L domain-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	(deletion:cds_exon[159559160,159559231])	no_errors
SHC4	399694	genome.wustl.edu	37	15	49148314	49148314	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	49148314	49148314	C	A	SNP	SHC4	NM_203349	human	genbank	57_37b	-1	validated	missense	c.1078	p.V360L	0.917	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
SPTB	6710	genome.wustl.edu	37	14	65253821	65253821	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	65253821	65253821	G	A	SNP	SPTB	NM_001024858	human	genbank	57_37b	-1	reviewed	silent	c.2862	p.L954	0.989	HMMPfam_Spectrin	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
TAB2	0	genome.wustl.edu	37	6	149699358	149699359	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	149699358	149699359	-	T	INS	TAB2	NM_015093	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.307_308	p.T104fs	1.000:1.000	NULL	HMMPfam_CUE,HMMSmart_SM00546,superfamily_NZF domain,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors
THEG	51298	genome.wustl.edu	37	19	362223	362223	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	362223	362223	C	G	SNP	THEG	NM_016585	human	genbank	57_37b	-1	reviewed	missense	c.1117	p.D373H	0.144	NULL	HMMSmart_SM00705	-	no_errors
TOX3	27324	genome.wustl.edu	37	16	52473645	52473645	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	52473645	52473645	G	A	SNP	TOX3	NM_001080430	human	genbank	57_37b	-1	reviewed	missense	c.1223	p.P408L	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
TPO	7173	genome.wustl.edu	37	2	1546242	1546242	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1546242	1546242	T	A	SNP	TPO	NM_000547	human	genbank	57_37b	+1	reviewed	missense	c.2798	p.L933H	0.000	NULL	superfamily_Heme-dependent peroxidases,HMMPfam_An_peroxidase,PatternScan_PEROXIDASE_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
VCX	26609	genome.wustl.edu	37	X	7811288	7811288	+	Missense_Mutation	SNP	C	C	G	rs5934423	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	7811288	7811288	C	G	SNP	VCX	NM_013452	human	genbank	57_37b	+1	reviewed	missense	c.44	p.T15R	0.000	NULL	NULL	-	
WSCD2	9671	genome.wustl.edu	37	12	108604055	108604055	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108604055	108604055	C	T	SNP	WSCD2	NM_014653	human	genbank	57_37b	+1	validated	nonsense	c.655	p.Q219*	1.000	HMMSmart_SM00321	HMMSmart_SM00321,HMMPfam_WSC,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZCCHC16	340595	genome.wustl.edu	37	X	111698734	111698734	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A07G-01A-11W-A050-09	TCGA-A8-A07G-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	111698734	111698734	C	T	SNP	ZCCHC16	NM_001004308	human	genbank	57_37b	+1	validated	nonsense	c.778	p.R260*	0.000	NULL	HMMSmart_ZnF_C2HC	-	no_errors
