Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA17P	650655	genome.wustl.edu	37	16	2475021	2475021	+	RNA	SNP	T	C	C	rs11641123	byCluster;byHapMap;by1000genomes	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2475021	2475021	T	C	SNP	ABCA17P	NR_003574	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.999	-	-	-	
ADA	100	genome.wustl.edu	37	20	43249699	43249699	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43249699	43249699	T	C	SNP	ADA	NM_000022	human	genbank	57_37b	-1	reviewed	missense	c.935	p.K312R	0.004	superfamily_SSF51556,HMMPfam_A_deaminase	superfamily_SSF51556,HMMPfam_A_deaminase,PatternScan_A_DEAMINASE	-	no_errors
APOB	338	genome.wustl.edu	37	2	21234125	21234125	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21234125	21234125	A	T	SNP	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	missense	c.5615	p.I1872N	0.076	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
ATF7IP	55729	genome.wustl.edu	37	12	14631311	14631311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	14631311	14631311	G	A	SNP	ATF7IP	NM_018179	human	genbank	57_37b	+1	validated	missense	c.3002	p.R1001Q	1.000	NULL	superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors
C11orf41	25758	genome.wustl.edu	37	11	33628300	33628300	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33628300	33628300	A	C	SNP	C11orf41	NM_012194	human	genbank	57_37b	+1	validated	missense	c.4120	p.T1374P	0.207	NULL	NULL	-	no_errors
C1orf116	79098	genome.wustl.edu	37	1	207196236	207196236	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207196236	207196236	A	G	SNP	C1orf116	NM_023938	human	genbank	57_37b	-1	validated	silent	c.873	p.A291	0.000	NULL	NULL	-	no_errors
CCM2	83605	genome.wustl.edu	37	7	45104124	45104124	+	Silent	SNP	G	G	A	rs35888291	byCluster;by1000genomes	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45104124	45104124	G	A	SNP	CCM2	NM_001029835	human	genbank	57_37b	+1	reviewed	silent	c.414	p.A138	0.999	NULL	NULL	-	
CD1D	912	genome.wustl.edu	37	1	158151458	158151458	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158151458	158151458	G	A	SNP	CD1D	NM_001766	human	genbank	57_37b	+1	reviewed	missense	c.275	p.R92Q	0.000	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
CELSR2	1952	genome.wustl.edu	37	1	109814973	109814973	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	109814973	109814973	A	C	SNP	CELSR2	NM_001408	human	genbank	57_37b	+1	reviewed	missense	c.8000	p.H2667P	1.000	NULL	PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMSmart_TNFR,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMSmart_HormR,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2	-	no_errors
CLCN4	1183	genome.wustl.edu	37	X	10176393	10176393	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	10176393	10176393	C	T	SNP	CLCN4	NM_001830	human	genbank	57_37b	+1	reviewed	silent	c.1152	p.A384	1.000	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC	superfamily_Clc chloride channel,HMMPfam_Voltage_CLC,superfamily_CBS-domain,HMMSmart_SM00116,HMMPfam_CBS	-	no_errors
CSHL1	1444	genome.wustl.edu	37	17	61988207	61988207	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61988207	61988207	C	T	SNP	CSHL1	NM_022579	human	genbank	57_37b	-1	reviewed	missense	c.88	p.V30I	0.612	HMMPfam_Hormone_1,superfamily_4-helical cytokines	HMMPfam_Hormone_1,superfamily_4-helical cytokines,PatternScan_SOMATOTROPIN_2	-	no_errors
DDX10	1662	genome.wustl.edu	37	11	108722938	108722938	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108722938	108722938	T	G	SNP	DDX10	NM_004398	human	genbank	57_37b	+1	reviewed	splice_site	c.2304+2	e16+2	1.000	-	-	-	no_errors
EGF	1950	genome.wustl.edu	37	4	110901145	110901145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	110901145	110901145	G	A	SNP	EGF	NM_001963	human	genbank	57_37b	+1	reviewed	missense	c.2071	p.A691T	0.993	superfamily_SSF63825,HMMPfam_Ldl_recept_b,HMMSmart_LY	superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
ELOVL3	83401	genome.wustl.edu	37	10	103986408	103986408	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103986408	103986408	T	G	SNP	ELOVL3	NM_152310	human	genbank	57_37b	+1	provisional	splice_site	c.101+2	e1+2	1.000	-	-	-	no_errors
ENSG00000247325	0	genome.wustl.edu	37	5	178030990	178030990	+	RNA	SNP	A	A	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	178030990	178030990	A	C	SNP	ENSG00000247325	ENST00000501192	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
FAM134C	162427	genome.wustl.edu	37	17	40733786	40733786	+	RNA	SNP	A	A	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40733786	40733786	A	G	SNP	FAM134C	NR_026697	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
FUS	2521	genome.wustl.edu	37	16	31202420	31202420	+	Missense_Mutation	SNP	G	G	C	rs1132415	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31202420	31202420	G	C	SNP	FUS	NM_004960	human	genbank	57_37b	+1	reviewed	missense	c.1530	p.K510N	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	
GDI1	2664	genome.wustl.edu	37	X	153670141	153670141	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153670141	153670141	G	A	SNP	GDI1	NM_001493	human	genbank	57_37b	+1	reviewed	missense	c.991	p.D331N	1.000	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	superfamily_FAD/NAD(P)-binding domain,HMMPfam_GDI	-	no_errors
GPR109B	8843	genome.wustl.edu	37	12	123201175	123201175	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123201175	123201175	T	C	SNP	GPR109B	NM_006018	human	genbank	57_37b	-1	validated	missense	c.110	p.E37G	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HSP90AB1	3326	genome.wustl.edu	37	6	44217181	44217197	+	Frame_Shift_Del	DEL	AAATTGACATCATCCCC	AAATTGACATCATCCCC	-	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	AAATTGACATCATCCCC	AAATTGACATCATCCCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44217181	44217197	AAATTGACATCATCCCC	-	DEL	HSP90AB1	NM_007355	human	genbank	57_37b	+1	provisional	frame_shift_del	c.215_231	p.I73fs	1.000:0.993:1.000:1.000:0.968:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,PatternScan_HSP90,HMMPfam_HATPase_c,HMMSmart_SM00387,HMMPfam_HSP90,superfamily_Ribosomal protein S5 domain 2-like,superfamily_HSP90 C-terminal domain (C-terminal part of Pfam 00183)	(deletion:cds_exon[44217114,44217320])	no_errors
LDB1	8861	genome.wustl.edu	37	10	103869779	103869779	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103869779	103869779	A	G	SNP	LDB1	NM_001113407	human	genbank	57_37b	-1	validated	missense	c.547	p.Y183H	1.000	HMMPfam_LIM_bind	HMMPfam_LIM_bind	-	no_errors
LOC100289119	0	genome.wustl.edu	37	19	36293136	36293136	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36293136	36293136	G	A	SNP	LOC100289119	XM_002343676	human	genbank	57_37b	+1	model	missense	c.254	p.R85Q	0.961	NULL	NULL	-	no_errors
LOC646201	646201	genome.wustl.edu	37	13	23471634	23471634	+	RNA	SNP	G	G	A	rs75229001	byCluster;by1000genomes	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	23471634	23471634	G	A	SNP	LOC646201	XR_016396	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.994	-	-	-	
MALAT1	378938	genome.wustl.edu	37	11	65273405	65273407	+	RNA	DEL	CTG	CTG	-	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65273405	65273407	CTG	-	DEL	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	1.000:1.000:1.000	-	-	(deletion:rna[65265233,65273940])	no_errors
MFAP3	4238	genome.wustl.edu	37	5	153433556	153433556	+	RNA	SNP	C	C	G	rs17535045	byCluster;byFrequency;by1000genomes	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153433556	153433556	C	G	SNP	MFAP3	NR_024152	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
MYH3	4621	genome.wustl.edu	37	17	10552971	10552971	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10552971	10552971	T	G	SNP	MYH3	NM_002470	human	genbank	57_37b	-1	reviewed	missense	c.565	p.T189P	1.000	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
MYL6	4637	genome.wustl.edu	37	12	56554049	56554049	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56554049	56554049	A	C	SNP	MYL6	NM_021019	human	genbank	57_37b	+1	reviewed	missense	c.372	p.E124D	1.000	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand	-	no_errors
OR8K1	390157	genome.wustl.edu	37	11	56114030	56114030	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	56114030	56114030	G	A	SNP	OR8K1	NM_001002907	human	genbank	57_37b	+1	provisional	silent	c.516	p.L172	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
P2RX4	5025	genome.wustl.edu	37	12	121659957	121659957	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	121659957	121659957	A	C	SNP	P2RX4	NM_002560	human	genbank	57_37b	+1	reviewed	missense	c.415	p.T139P	0.630	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
PADI1	29943	genome.wustl.edu	37	1	17567195	17567195	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17567195	17567195	G	T	SNP	PADI1	NM_013358	human	genbank	57_37b	+1	reviewed	silent	c.1698	p.V566	0.980	HMMPfam_PAD,superfamily_Pentein	HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3R4	30849	genome.wustl.edu	37	3	130463555	130463566	+	In_Frame_Del	DEL	AACTGGCAAAAT	AACTGGCAAAAT	-	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	AACTGGCAAAAT	AACTGGCAAAAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130463555	130463566	AACTGGCAAAAT	-	DEL	PIK3R4	NM_014602	human	genbank	57_37b	-1	validated	in_frame_del	c.508_497	p.DFASF166in_frame_delV	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST,superfamily_ARM-type_fold,HMMPfam_HEAT,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	(deletion:cds_exon[130463330,130464062])	no_errors
PKD1	5310	genome.wustl.edu	37	16	2140321	2140321	+	Silent	SNP	G	A	A	rs79899502	byCluster;byFrequency;by1000genomes	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2140321	2140321	G	A	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	silent	c.12409	p.L4137	1.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	
PLEKHH1	57475	genome.wustl.edu	37	14	68042723	68042723	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	68042723	68042723	G	T	SNP	PLEKHH1	NM_020715	human	genbank	57_37b	+1	validated	splice_site	c.2352+1	e15+1	1.000	-	-	-	no_errors
PPP2CA	5515	genome.wustl.edu	37	5	133537565	133537565	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	133537565	133537565	G	A	SNP	PPP2CA	NM_002715	human	genbank	57_37b	-1	reviewed	missense	c.460	p.P154S	1.000	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
PRKAR1A	5573	genome.wustl.edu	37	17	66526534	66526534	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66526534	66526534	G	T	SNP	PRKAR1A	NM_002734	human	genbank	57_37b	+1	reviewed	missense	c.1090	p.D364Y	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	HMMPfam_RIIa,HMMSmart_SM00394,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
ROBO3	64221	genome.wustl.edu	37	11	124740064	124740064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124740064	124740064	G	A	SNP	ROBO3	NM_022370	human	genbank	57_37b	+1	reviewed	missense	c.770	p.R257H	1.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
SKAP1	8631	genome.wustl.edu	37	17	46257608	46257608	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	46257608	46257608	G	A	SNP	SKAP1	NM_003726	human	genbank	57_37b	-1	reviewed	silent	c.634	p.L212	1.000	superfamily_PH domain-like,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
SPATA17	128153	genome.wustl.edu	37	1	217975165	217975165	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	217975165	217975165	A	G	SNP	SPATA17	NM_138796	human	genbank	57_37b	+1	provisional	silent	c.978	p.E326	0.980	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
TAF1L	138474	genome.wustl.edu	37	9	32633083	32633083	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32633083	32633083	C	T	SNP	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	missense	c.2495	p.R832H	1.000	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
TMEM119	338773	genome.wustl.edu	37	12	108985707	108985707	+	Missense_Mutation	SNP	A	A	C	rs7972096	byCluster;byFrequency;by1000genomes	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108985707	108985707	A	C	SNP	TMEM119	NM_181724	human	genbank	57_37b	-1	validated	missense	c.453	p.S151R	1.000	NULL	NULL	-	
TRANK1	9881	genome.wustl.edu	37	3	36874921	36874921	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	36874921	36874921	G	C	SNP	TRANK1	NM_014831	human	genbank	57_37b	-1	provisional	missense	c.4371	p.F1457L	0.069	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TSSK3	81629	genome.wustl.edu	37	1	32828449	32828449	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32828449	32828449	T	G	SNP	TSSK3	NM_052841	human	genbank	57_37b	+1	reviewed	splice_site	c.145+2	e1+2	1.000	-	-	-	no_errors
TUBGCP4	27229	genome.wustl.edu	37	15	43696712	43696712	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A08O-01A-21W-A071-09	TCGA-A8-A08O-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43696712	43696712	T	C	SNP	TUBGCP4	NM_014444	human	genbank	57_37b	+1	provisional	silent	c.1950	p.Y650	1.000	NULL	HMMPfam_Spc97_Spc98	-	no_errors
