Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AFF1	4299	genome.wustl.edu	37	4	87967342	87967342	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	87967342	87967342	G	A	SNP	AFF1	NM_005935	human	genbank	57_37b	+1	validated	silent	c.42	p.L14	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AGBL5	60509	genome.wustl.edu	37	2	27293023	27293026	+	Frame_Shift_Del	DEL	TCTA	TCTA	-	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	TCTA	TCTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27293023	27293026	TCTA	-	DEL	AGBL5	NM_021831	human	genbank	57_37b	+1	validated	frame_shift_del	c.2553_2556	p.S853fs	0.984:0.972:0.932:0.075	NULL	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14	(deletion:cds_exon[27292960,27293131])	no_errors
AMIGO2	347902	genome.wustl.edu	37	12	47471357	47471357	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	47471357	47471357	C	T	SNP	AMIGO2	NM_001143668	human	genbank	57_37b	-1	validated	missense	c.1429	p.A477T	0.001	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
ANKS4B	257629	genome.wustl.edu	37	16	21261779	21261779	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21261779	21261779	C	A	SNP	ANKS4B	NM_145865	human	genbank	57_37b	+1	validated	missense	c.892	p.L298M	0.064	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
ARMC3	219681	genome.wustl.edu	37	10	23326258	23326258	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	23326258	23326258	G	A	SNP	ARMC3	NM_173081	human	genbank	57_37b	+1	validated	silent	c.2469	p.A823	0.174	NULL	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
ASH2L	9070	genome.wustl.edu	37	8	37996363	37996363	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	37996363	37996363	G	T	SNP	ASH2L	NM_004674	human	genbank	57_37b	+1	validated	missense	c.1749	p.K583N	1.000	NULL	HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160061486	160061499	+	Frame_Shift_Del	DEL	TTGAGGGCTCGACA	TTGAGGGCTCGACA	-	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	TTGAGGGCTCGACA	TTGAGGGCTCGACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160061486	160061499	TTGAGGGCTCGACA	-	DEL	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	frame_shift_del	c.1256_1243	p.C415fs	1.000:1.000:0.896:1.000:1.000:0.999:1.000:1.000:0.990:1.000:0.999:0.978:1.000:1.000	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	(deletion:cds_exon[160061361,160061613])	no_errors
BRF1	2972	genome.wustl.edu	37	14	105695250	105695250	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105695250	105695250	G	A	SNP	BRF1	NM_001519	human	genbank	57_37b	-1	reviewed	missense	c.695	p.A232V	0.999	superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB	HMMPfam_TFIIB_Zn_Ribbon,superfamily_Zinc beta-ribbon,superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_TFIIB,HMMPfam_BRF1	-	no_errors
C16orf91	283951	genome.wustl.edu	37	16	1470148	1470148	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1470148	1470148	G	C	SNP	C16orf91	NM_001010878	human	genbank	57_37b	-1	provisional	silent	c.867	p.L289	0.000	NULL	NULL	-	no_errors
C1orf101	257044	genome.wustl.edu	37	1	244798805	244798805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244798805	244798805	C	T	SNP	C1orf101	NM_001130957	human	genbank	57_37b	+1	validated	missense	c.2663	p.T888I	0.072	NULL	NULL	-	no_errors
CCDC110	256309	genome.wustl.edu	37	4	186383863	186383863	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	186383863	186383863	C	G	SNP	CCDC110	NM_152775	human	genbank	57_37b	-1	validated	splice_site	c.172-1	e4-1	1.000	-	-	-	no_errors
CD2	914	genome.wustl.edu	37	1	117297341	117297341	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117297341	117297341	G	C	SNP	CD2	NM_001767	human	genbank	57_37b	+1	validated	missense	c.150	p.M50I	0.000	HMMPfam_V-set,superfamily_Immunoglobulin	HMMPfam_V-set,superfamily_Immunoglobulin,HMMPfam_C2-set	-	no_errors
COBLL1	22837	genome.wustl.edu	37	2	165551305	165551305	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	165551305	165551305	G	C	SNP	COBLL1	NM_014900	human	genbank	57_37b	-1	validated	missense	c.2711	p.S904C	1.000	NULL	HMMPfam_Cobl	-	no_errors
COL13A1	1305	genome.wustl.edu	37	10	71690163	71690163	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	71690163	71690163	G	A	SNP	COL13A1	NM_001130103	human	genbank	57_37b	+1	reviewed	missense	c.1505	p.R502H	1.000	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
COPS8	10920	genome.wustl.edu	37	2	237994668	237994668	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	237994668	237994668	G	A	SNP	COPS8	NM_006710	human	genbank	57_37b	+1	reviewed	missense	c.61	p.E21K	1.000	NULL	HMMPfam_PCI_Csn8	-	no_errors
DIP2A	23181	genome.wustl.edu	37	21	47904738	47904738	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47904738	47904738	C	G	SNP	DIP2A	NM_015151	human	genbank	57_37b	+1	reviewed	missense	c.160	p.Q54E	1.000	HMMPfam_DMAP_binding	HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	-	no_errors
DNAJC6	9829	genome.wustl.edu	37	1	65855273	65855273	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	65855273	65855273	C	A	SNP	DNAJC6	NM_014787	human	genbank	57_37b	+1	validated	nonsense	c.1260	p.Y420*	0.055	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-	no_errors
DNMBP	23268	genome.wustl.edu	37	10	101668763	101668763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101668763	101668763	G	A	SNP	DNMBP	NM_015221	human	genbank	57_37b	-1	validated	missense	c.2401	p.R801W	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,HMMSmart_SM00721,HMMPfam_BAR	-	no_errors
DOCK7	85440	genome.wustl.edu	37	1	62970310	62970310	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62970310	62970310	C	G	SNP	DOCK7	NM_033407	human	genbank	57_37b	-1	validated	missense	c.4662	p.E1554D	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
DST	667	genome.wustl.edu	37	6	56482819	56482819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	56482819	56482819	C	T	SNP	DST	NM_001723	human	genbank	57_37b	-1	reviewed	missense	c.6013	p.E2005K	0.992	NULL	HMMSmart_SPEC,superfamily_Spectrin,HMMPfam_Spectrin,superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin	-	no_errors
DYNLT3	6990	genome.wustl.edu	37	X	37700304	37700304	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	37700304	37700304	C	G	SNP	DYNLT3	NM_006520	human	genbank	57_37b	-1	validated	missense	c.251	p.C84S	0.995	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	no_errors
ECHDC1	55862	genome.wustl.edu	37	6	127611347	127611347	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	127611347	127611347	G	T	SNP	ECHDC1	NM_001139510	human	genbank	57_37b	-1	validated	silent	c.591	p.T197	0.288	superfamily_ClpP/crotonase,HMMPfam_ECH	superfamily_ClpP/crotonase,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE	-	no_errors
EFCAB6	64800	genome.wustl.edu	37	22	43950819	43950819	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43950819	43950819	G	A	SNP	EFCAB6	NM_022785	human	genbank	57_37b	-1	validated	missense	c.3578	p.T1193M	0.000	superfamily_EF-hand,HMMSmart_SM00054	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_DUF1880	-	no_errors
EFEMP1	2202	genome.wustl.edu	37	2	56145073	56145073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	56145073	56145073	C	T	SNP	EFEMP1	NM_001039348	human	genbank	57_37b	-1	reviewed	missense	c.244	p.E82K	1.000	NULL	superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
EIF2B3	8891	genome.wustl.edu	37	1	45323458	45323458	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	45323458	45323458	G	A	SNP	EIF2B3	NM_020365	human	genbank	57_37b	-1	reviewed	silent	c.1224	p.V408	1.000	superfamily_Trimeric LpxA-like enzymes	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_NTP_transferase,superfamily_Trimeric LpxA-like enzymes	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2553	2553	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	2553	2553	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000245476	0	genome.wustl.edu	37	10	72531697	72531697	+	RNA	SNP	A	A	G	rs2791196	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72531697	72531697	A	G	SNP	ENSG00000245476	ENST00000499814	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247175	0	genome.wustl.edu	37	12	46595019	46595019	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	46595019	46595019	G	A	SNP	ENSG00000247175	ENST00000502086	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000247201	0	genome.wustl.edu	37	11	104913762	104913763	+	RNA	INS	-	-	AA	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	104913762	104913763	-	AA	INS	ENSG00000247201	ENST00000500422	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001:0.001	-	-	-	no_errors
ENSG00000247509	0	genome.wustl.edu	37	11	6340957	6340957	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6340957	6340957	G	A	SNP	ENSG00000247509	ENST00000500545	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
EPHA7	2045	genome.wustl.edu	37	6	93956553	93956553	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	93956553	93956553	G	C	SNP	EPHA7	NM_004440	human	genbank	57_37b	-1	reviewed	missense	c.2683	p.R895G	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,superfamily_Growth factor receptor domain,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
FAM46C	54855	genome.wustl.edu	37	1	118166379	118166379	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	118166379	118166379	G	A	SNP	FAM46C	NM_017709	human	genbank	57_37b	+1	validated	missense	c.889	p.A297T	0.890	HMMPfam_DUF1693	HMMPfam_DUF1693	-	no_errors
FARP1	10160	genome.wustl.edu	37	13	99083458	99083458	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	99083458	99083458	C	T	SNP	FARP1	NM_005766	human	genbank	57_37b	+1	reviewed	silent	c.2067	p.L689	0.998	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
FBXL4	26235	genome.wustl.edu	37	6	99322245	99322245	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	99322245	99322245	A	G	SNP	FBXL4	NM_012160	human	genbank	57_37b	-1	reviewed	missense	c.1775	p.V592A	1.000	superfamily_SSF52047	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,HMMSmart_LRR_CC	-	no_errors
FBXL7	23194	genome.wustl.edu	37	5	15936870	15936870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	15936870	15936870	C	T	SNP	FBXL7	NM_012304	human	genbank	57_37b	+1	reviewed	missense	c.1051	p.R351C	1.000	superfamily_RNI-like,HMMSmart_SM00367	HMMPfam_F-box,HMMSmart_SM00256,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors
FDPS	2224	genome.wustl.edu	37	1	155290280	155290280	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155290280	155290280	C	T	SNP	FDPS	NM_001135821	human	genbank	57_37b	+1	reviewed	silent	c.1140	p.F380	0.642	superfamily_Terpenoid_synth,HMMPfam_polyprenyl_synt	superfamily_Terpenoid_synth,HMMPfam_polyprenyl_synt,PatternScan_POLYPRENYL_SYNTHET_1,PatternScan_POLYPRENYL_SYNTHET_2	-	no_errors
GPR112	139378	genome.wustl.edu	37	X	135429691	135429691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135429691	135429691	G	A	SNP	GPR112	NM_153834	human	genbank	57_37b	+1	validated	missense	c.3826	p.E1276K	0.024	NULL	superfamily_ConA_like_lec_gl,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
HAUS8	93323	genome.wustl.edu	37	19	17169632	17169632	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17169632	17169632	G	C	SNP	HAUS8	NM_033417	human	genbank	57_37b	-1	validated	missense	c.475	p.L159V	0.180	NULL	NULL	-	no_errors
HDAC1	3065	genome.wustl.edu	37	1	32797323	32797323	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32797323	32797323	G	T	SNP	HDAC1	NM_004964	human	genbank	57_37b	+1	reviewed	missense	c.1135	p.V379F	1.000	NULL	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	-	no_errors
HEATR3	55027	genome.wustl.edu	37	16	50112756	50112756	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50112756	50112756	G	T	SNP	HEATR3	NM_182922	human	genbank	57_37b	+1	provisional	nonsense	c.868	p.E290*	0.007	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
HSD17B1	3292	genome.wustl.edu	37	17	40706906	40706906	+	Missense_Mutation	SNP	G	A	A	rs605059	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40706906	40706906	G	A	SNP	HSD17B1	NM_000413	human	genbank	57_37b	+1	validated	missense	c.937	p.G313S	0.000	NULL	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	
IPMK	253430	genome.wustl.edu	37	10	59956131	59956131	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	59956131	59956131	C	T	SNP	IPMK	NM_152230	human	genbank	57_37b	-1	provisional	silent	c.957	p.A319	0.003	superfamily_SSF56104,HMMPfam_IPK	superfamily_SSF56104,HMMPfam_IPK	-	no_errors
ITGA11	22801	genome.wustl.edu	37	15	68695306	68695306	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	68695306	68695306	C	T	SNP	ITGA11	NM_001004439	human	genbank	57_37b	-1	reviewed	missense	c.115	p.A39T	0.961	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains	-	no_errors
KCNH5	27133	genome.wustl.edu	37	14	63416872	63416872	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	63416872	63416872	C	A	SNP	KCNH5	NM_139318	human	genbank	57_37b	-1	reviewed	missense	c.1348	p.V450L	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
KIF17	57576	genome.wustl.edu	37	1	21014060	21014060	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	21014060	21014060	C	T	SNP	KIF17	NM_020816	human	genbank	57_37b	-1	validated	missense	c.1759	p.G587R	0.002	NULL	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KIF5A	3798	genome.wustl.edu	37	12	57976912	57976912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57976912	57976912	G	A	SNP	KIF5A	NM_004984	human	genbank	57_37b	+1	reviewed	missense	c.3049	p.E1017K	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_Prefoldin	-	no_errors
LGI3	203190	genome.wustl.edu	37	8	22006360	22006360	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22006360	22006360	G	C	SNP	LGI3	NM_139278	human	genbank	57_37b	-1	validated	missense	c.960	p.D320E	1.000	HMMPfam_EPTP	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_EPTP	-	no_errors
LOC100288541	0	genome.wustl.edu	37	7	148888168	148888168	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	148888168	148888168	C	A	SNP	LOC100288541	XM_002342803	human	genbank	57_37b	-1	model	missense	c.148	p.G50W	1.000	superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44	superfamily_Zn-binding ribosomal proteins,HMMPfam_Ribosomal_L44	-	no_errors
LOC730978	730978	genome.wustl.edu	37	1	224136856	224136856	+	RNA	SNP	C	C	T	rs113203506	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	224136856	224136856	C	T	SNP	LOC730978	XR_037258	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.903	-	-	-	
MGAT4C	25834	genome.wustl.edu	37	12	86373693	86373693	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	86373693	86373693	G	A	SNP	MGAT4C	NM_013244	human	genbank	57_37b	-1	validated	missense	c.811	p.R271C	1.000	HMMPfam_Glyco_transf_54	HMMPfam_Glyco_transf_54	-	no_errors
MICALCL	84953	genome.wustl.edu	37	11	12315451	12315451	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	12315451	12315451	G	T	SNP	MICALCL	NM_032867	human	genbank	57_37b	+1	validated	missense	c.473	p.S158I	0.000	NULL	NULL	-	no_errors
MPHOSPH8	54737	genome.wustl.edu	37	13	20220931	20220931	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	20220931	20220931	A	T	SNP	MPHOSPH8	NM_017520	human	genbank	57_37b	+1	validated	missense	c.718	p.T240S	0.580	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
MTMR2	8898	genome.wustl.edu	37	11	95583906	95583906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	95583906	95583906	G	A	SNP	MTMR2	NM_016156	human	genbank	57_37b	-1	reviewed	missense	c.662	p.P221L	1.000	superfamily_SSF52799	HMMSmart_GRAM,superfamily_SSF50729,HMMPfam_GRAM,superfamily_SSF52799,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9062300	9062300	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9062300	9062300	C	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	missense	c.25146	p.M8382I	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
MUC3A	4584	genome.wustl.edu	37	7	100550534	100550534	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100550534	100550534	C	T	SNP	MUC3A	XM_001725354	human	genbank	57_37b	+1	model	missense	c.1115	p.S372F	0.047	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
MYH14	79784	genome.wustl.edu	37	19	50735280	50735280	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50735280	50735280	C	G	SNP	MYH14	NM_001077186	human	genbank	57_37b	+1	reviewed	missense	c.1067	p.T356R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors
MYOM3	127294	genome.wustl.edu	37	1	24384096	24384096	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24384096	24384096	C	T	SNP	MYOM3	NM_152372	human	genbank	57_37b	-1	validated	missense	c.4072	p.V1358I	0.877	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_EF_HAND_1,HMMPfam_ig	-	no_errors
NAP1L2	4674	genome.wustl.edu	37	X	72433777	72433777	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	72433777	72433777	C	T	SNP	NAP1L2	NM_021963	human	genbank	57_37b	-1	reviewed	silent	c.552	p.E184	0.100	HMMPfam_NAP	HMMPfam_NAP	-	no_errors
NIF3L1	60491	genome.wustl.edu	37	2	201757024	201757028	+	Frame_Shift_Del	DEL	AGAGT	AGAGT	-	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	AGAGT	AGAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	201757024	201757028	AGAGT	-	DEL	NIF3L1	NM_001136039	human	genbank	57_37b	+1	validated	frame_shift_del	c.358_362	p.V121fs	0.997:1.000:0.966:0.959:0.961	superfamily_NIF3 (NGG1p interacting factor 3)-like,HMMPfam_NIF3	superfamily_NIF3 (NGG1p interacting factor 3)-like,HMMPfam_NIF3	(deletion:cds_exon[201756667,201757102])	no_errors
NIPBL	25836	genome.wustl.edu	37	5	36985957	36985957	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	36985957	36985957	G	T	SNP	NIPBL	NM_133433	human	genbank	57_37b	+1	reviewed	missense	c.2675	p.S892I	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NOD2	64127	genome.wustl.edu	37	16	50733855	50733855	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	50733855	50733855	C	G	SNP	NOD2	NM_022162	human	genbank	57_37b	+1	reviewed	missense	c.530	p.P177R	0.295	superfamily_DEATH domain,HMMPfam_CARD	HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors
OR1A2	26189	genome.wustl.edu	37	17	3101670	3101670	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	3101670	3101670	C	G	SNP	OR1A2	NM_012352	human	genbank	57_37b	+1	provisional	missense	c.858	p.F286L	1.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR5H1	26341	genome.wustl.edu	37	3	97851825	97851825	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97851825	97851825	C	G	SNP	OR5H1	NM_001005338	human	genbank	57_37b	+1	provisional	missense	c.284	p.S95C	0.004	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PBX4	80714	genome.wustl.edu	37	19	19675795	19675795	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19675795	19675795	G	A	SNP	PBX4	NM_025245	human	genbank	57_37b	-1	reviewed	missense	c.872	p.T291M	0.752	NULL	HMMPfam_PBC,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
PHC1B	0	genome.wustl.edu	37	12	55807382	55807382	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55807382	55807382	A	G	SNP	PHC1B	ENST00000326184	human	ensembl	57_37b	-1	known	missense	c.1139	p.I380T	0.948	NULL	HMMPfam_zf-FCS,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
PHF8	23133	genome.wustl.edu	37	X	54014274	54014274	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54014274	54014274	C	G	SNP	PHF8	NM_015107	human	genbank	57_37b	-1	validated	missense	c.1834	p.D612H	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_EGF_2,PatternScan_ZF_PHD_1,superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors
PLA2G4A	5321	genome.wustl.edu	37	1	186901903	186901903	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186901903	186901903	G	T	SNP	PLA2G4A	NM_024420	human	genbank	57_37b	+1	reviewed	silent	c.567	p.V189	1.000	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B,PatternScan_PPASE,PatternScan_SUBTILASE_ASP	-	no_errors
PLA2G4F	255189	genome.wustl.edu	37	15	42442039	42442039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42442039	42442039	C	T	SNP	PLA2G4F	NM_213600	human	genbank	57_37b	-1	validated	missense	c.931	p.D311N	1.000	HMMSmart_SM00022	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	-	no_errors
PON3	5446	genome.wustl.edu	37	7	94993187	94993187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	94993187	94993187	G	A	SNP	PON3	NM_000940	human	genbank	57_37b	-1	reviewed	missense	c.683	p.S228L	1.000	superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Arylesterase	superfamily_Calcium-dependent phosphotriesterase,HMMPfam_Arylesterase	-	no_errors
PPAN	56342	genome.wustl.edu	37	19	10224406	10224406	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10224406	10224406	C	T	SNP	PPAN	ENST00000428358	human	ensembl	57_37b	+1	known	missense	c.1439	p.S480F	0.954	NULL	HMMPfam_Brix	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48765336	48765336	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48765336	48765336	C	A	SNP	PRKDC	ENST00000314191	human	ensembl	57_37b	-1	known	missense	c.6900	p.Q2300H	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
RFX7	64864	genome.wustl.edu	37	15	56387080	56387080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	56387080	56387080	G	A	SNP	RFX7	NM_022841	human	genbank	57_37b	-1	validated	missense	c.2846	p.T949I	1.000	NULL	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RNF219	79596	genome.wustl.edu	37	13	79190455	79190455	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	79190455	79190455	C	G	SNP	RNF219	NM_024546	human	genbank	57_37b	-1	validated	missense	c.1441	p.E481Q	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4	-	no_errors
ROR1	4919	genome.wustl.edu	37	1	64515374	64515374	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	64515374	64515374	A	T	SNP	ROR1	NM_005012	human	genbank	57_37b	+1	validated	missense	c.175	p.T59S	0.998	superfamily_Immunoglobulin,HMMPfam_I-set	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Fz,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
SCUBE2	57758	genome.wustl.edu	37	11	9080884	9080884	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	9080884	9080884	T	C	SNP	SCUBE2	NM_020974	human	genbank	57_37b	-1	validated	silent	c.1056	p.G352	1.000	HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
SF4	57794	genome.wustl.edu	37	19	19391074	19391074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19391074	19391074	C	T	SNP	SF4	NM_172231	human	genbank	57_37b	-1	validated	missense	c.1270	p.E424K	1.000	NULL	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
SLC44A5	204962	genome.wustl.edu	37	1	75693466	75693466	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	75693466	75693466	C	T	SNP	SLC44A5	NM_152697	human	genbank	57_37b	-1	validated	silent	c.930	p.G310	0.992	NULL	HMMPfam_DUF580	-	no_errors
SNORA14B	677802	genome.wustl.edu	37	1	235291201	235291201	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235291201	235291201	C	T	SNP	SNORA14B	NR_002956	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	1.000	-	-	-	no_errors
SNRPC	6631	genome.wustl.edu	37	6	34738134	34738134	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	34738134	34738134	T	C	SNP	SNRPC	NM_003093	human	genbank	57_37b	+1	reviewed	missense	c.317	p.M106T	1.000	NULL	HMMSmart_SM00451,HMMPfam_zf-U1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SP1	6667	genome.wustl.edu	37	12	53775484	53775484	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53775484	53775484	A	T	SNP	SP1	NM_138473	human	genbank	57_37b	+1	validated	missense	c.49	p.I17F	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
THSD7B	80731	genome.wustl.edu	37	2	138000128	138000128	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	138000128	138000128	G	A	SNP	THSD7B	NM_001080427	human	genbank	57_37b	+1	provisional	missense	c.2159	p.R720K	0.004	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
TM6SF2	53345	genome.wustl.edu	37	19	19381108	19381108	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19381108	19381108	C	T	SNP	TM6SF2	ENST00000431465	human	ensembl	57_37b	-1	known	missense	c.343	p.E115K	0.893	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578460	7578461	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578460	7578461	-	G	INS	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.470_469	p.V157fs	0.906:0.032	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578465	7578465	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578465	7578465	G	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	silent	c.465	p.T155	0.012	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRAF3IP3	80342	genome.wustl.edu	37	1	209951472	209951472	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	209951472	209951472	A	G	SNP	TRAF3IP3	NM_025228	human	genbank	57_37b	+1	provisional	silent	c.1146	p.S382	0.997	NULL	NULL	-	no_errors
TRAPPC2	6399	genome.wustl.edu	37	X	13734771	13734771	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	13734771	13734771	G	C	SNP	TRAPPC2	NM_001011658	human	genbank	57_37b	-1	reviewed	missense	c.120	p.F40L	1.000	superfamily_SNARE-like,HMMPfam_Sedlin_N	superfamily_SNARE-like,HMMPfam_Sedlin_N	-	no_errors
TRIT1	54802	genome.wustl.edu	37	1	40307548	40307548	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40307548	40307548	C	G	SNP	TRIT1	NM_017646	human	genbank	57_37b	-1	validated	missense	c.1272	p.K424N	1.000	HMMSmart_SM00451	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IPPT,HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179449464	179449464	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179449464	179449464	C	G	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.57194	p.R19065P	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TTPA	7274	genome.wustl.edu	37	8	63978649	63978649	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	63978649	63978649	C	G	SNP	TTPA	NM_000370	human	genbank	57_37b	-1	reviewed	missense	c.366	p.W122C	1.000	HMMPfam_CRAL_TRIO,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	superfamily_Sec14p_like_N,HMMPfam_CRAL_TRIO_N,HMMPfam_CRAL_TRIO,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	-	no_errors
USP34	9736	genome.wustl.edu	37	2	61622132	61622132	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61622132	61622132	T	C	SNP	USP34	NM_014709	human	genbank	57_37b	-1	validated	silent	c.609	p.V203	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
WBSCR28	135886	genome.wustl.edu	37	7	73279502	73279502	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73279502	73279502	A	G	SNP	WBSCR28	NM_182504	human	genbank	57_37b	+1	validated	missense	c.252	p.I84M	0.000	NULL	NULL	-	no_errors
ZGLP1	0	genome.wustl.edu	37	19	10415800	10415800	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10415800	10415800	A	T	SNP	ZGLP1	NM_001103167	human	genbank	57_37b	-1	validated	nonsense	c.783	p.C261*	0.995	NULL	PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716,HMMSmart_ZnF_GATA,HMMPfam_GATA	-	no_errors
ZNF578	147660	genome.wustl.edu	37	19	53007922	53007922	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53007922	53007922	C	T	SNP	ZNF578	NM_001099694	human	genbank	57_37b	+1	validated	silent	c.78	p.F26	0.835	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes	-	no_errors
ZNF626	199777	genome.wustl.edu	37	19	20807492	20807492	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20807492	20807492	G	C	SNP	ZNF626	NM_001076675	human	genbank	57_37b	-1	validated	nonsense	c.1191	p.Y397*	0.222	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF71	58491	genome.wustl.edu	37	19	57133197	57133197	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FJ-01A-11W-A019-09	TCGA-AN-A0FJ-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57133197	57133197	C	T	SNP	ZNF71	NM_021216	human	genbank	57_37b	+1	validated	missense	c.542	p.T181M	0.994	superfamily_SSF57667	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
