Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACCN3	9311	genome.wustl.edu	37	7	150746364	150746364	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150746364	150746364	G	A	SNP	ACCN3	NM_020321	human	genbank	57_37b	+1	reviewed	missense	c.392	p.R131Q	0.954	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
ADAMTS3	9508	genome.wustl.edu	37	4	73149357	73149357	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	73149357	73149357	G	A	SNP	ADAMTS3	NM_014243	human	genbank	57_37b	-1	reviewed	silent	c.3114	p.S1038	1.000	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ARMCX5	64860	genome.wustl.edu	37	X	101858403	101858403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	101858403	101858403	G	T	SNP	ARMCX5	NM_022838	human	genbank	57_37b	+1	validated	missense	c.1334	p.S445I	0.146	HMMPfam_DUF634,superfamily_ARM repeat	PatternScan_CPSASE_2,HMMPfam_DUF634,superfamily_ARM repeat	-	no_errors
C5orf25	375484	genome.wustl.edu	37	5	175717341	175717341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	175717341	175717341	C	T	SNP	C5orf25	ENST00000420396	human	ensembl	57_37b	+1	known	missense	c.757	p.R253W	0.004	NULL	NULL	-	no_errors
CEP250	11190	genome.wustl.edu	37	20	34092646	34092646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34092646	34092646	G	A	SNP	CEP250	NM_007186	human	genbank	57_37b	+1	reviewed	missense	c.6449	p.R2150Q	0.036	NULL	superfamily_Prefoldin	-	no_errors
CNGA4	1262	genome.wustl.edu	37	11	6261469	6261469	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6261469	6261469	C	T	SNP	CNGA4	NM_001037329	human	genbank	57_37b	+1	validated	missense	c.445	p.R149C	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
COL9A1	1297	genome.wustl.edu	37	6	70942387	70942387	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70942387	70942387	G	A	SNP	COL9A1	NM_001851	human	genbank	57_37b	-1	reviewed	missense	c.2402	p.P801L	0.997	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors
CR1	1378	genome.wustl.edu	37	1	207726127	207726127	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207726127	207726127	T	G	SNP	CR1	NM_000651	human	genbank	57_37b	+1	reviewed	missense	c.3032	p.V1011G	0.003	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
CRNKL1	51340	genome.wustl.edu	37	20	20033036	20033036	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20033036	20033036	A	C	SNP	CRNKL1	NM_016652	human	genbank	57_37b	-1	reviewed	missense	c.434	p.F145C	0.000	NULL	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like	-	no_errors
DMD	1756	genome.wustl.edu	37	X	31165506	31165506	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	31165506	31165506	C	A	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.10683	p.E3561D	1.000	superfamily_Prefoldin	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13923485	13923485	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13923485	13923485	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.342	p.F114	0.799	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DTNB	1838	genome.wustl.edu	37	2	25611152	25611152	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25611152	25611152	A	G	SNP	DTNB	NM_021907	human	genbank	57_37b	-1	reviewed	missense	c.1654	p.S552P	0.992	NULL	superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMSmart_SM00291,HMMPfam_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
ELMO1	9844	genome.wustl.edu	37	7	37253022	37253022	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	37253022	37253022	G	A	SNP	ELMO1	NM_014800	human	genbank	57_37b	-1	reviewed	missense	c.872	p.A291V	1.000	NULL	superfamily_ARM repeat,HMMPfam_ELMO_CED12,superfamily_PH domain-like	-	no_errors
ENSG00000234719	0	genome.wustl.edu	37	16	12021615	12021615	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	12021615	12021615	G	C	SNP	ENSG00000234719	ENST00000399147	human	ensembl	57_37b	-1	known	missense	c.758	p.S253C	0.000	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
ENSG00000245029	0	genome.wustl.edu	37	1	16889985	16889985	+	RNA	SNP	T	T	C	rs6603880	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16889985	16889985	T	C	SNP	ENSG00000245029	ENST00000500210	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.040	-	-	-	
ENSG00000247139	0	genome.wustl.edu	37	16	79628489	79628489	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	79628489	79628489	C	A	SNP	ENSG00000247139	ENST00000501911	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000247908	0	genome.wustl.edu	37	6	110758205	110758205	+	RNA	SNP	A	A	C	rs221715	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	110758205	110758205	A	C	SNP	ENSG00000247908	ENST00000499416	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.009	-	-	-	
FAM113B	91523	genome.wustl.edu	37	12	47630075	47630075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	47630075	47630075	C	T	SNP	FAM113B	NM_138371	human	genbank	57_37b	+1	predicted	missense	c.1229	p.T410M	0.000	NULL	superfamily_SGNH hydrolase	-	no_errors
FAM59A	64762	genome.wustl.edu	37	18	29848211	29848211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29848211	29848211	C	T	SNP	FAM59A	NM_022751	human	genbank	57_37b	-1	provisional	missense	c.2251	p.E751K	1.000	NULL	superfamily_SAM_homology,HMMPfam_SAM_1	-	no_errors
GAD1	2571	genome.wustl.edu	37	2	171685996	171685996	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	171685996	171685996	A	G	SNP	GAD1	NM_000817	human	genbank	57_37b	+1	reviewed	missense	c.157	p.R53G	1.000	NULL	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC	-	no_errors
GPC6	10082	genome.wustl.edu	37	13	94482640	94482640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	94482640	94482640	G	A	SNP	GPC6	NM_005708	human	genbank	57_37b	+1	reviewed	missense	c.553	p.D185N	1.000	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
GPR162	27239	genome.wustl.edu	37	12	6933549	6933549	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6933549	6933549	G	A	SNP	GPR162	NM_019858	human	genbank	57_37b	+1	reviewed	missense	c.485	p.R162H	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
GSK3B	2932	genome.wustl.edu	37	3	119585461	119585461	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	119585461	119585461	T	G	SNP	GSK3B	NM_002093	human	genbank	57_37b	-1	reviewed	silent	c.924	p.T308	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
HEPH	9843	genome.wustl.edu	37	X	65475997	65475997	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	65475997	65475997	C	G	SNP	HEPH	NM_138737	human	genbank	57_37b	+1	reviewed	missense	c.2730	p.I910M	0.065	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase_2,PatternScan_MULTICOPPER_OXIDASE2	-	no_errors
IL28B	282617	genome.wustl.edu	37	19	39735525	39735525	+	Missense_Mutation	SNP	C	T	T	rs629976	byFrequency	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39735525	39735525	C	T	SNP	IL28B	NM_172139	human	genbank	57_37b	-1	reviewed	missense	c.83	p.R28H	0.000	NULL	NULL	-	
KIAA0100	9703	genome.wustl.edu	37	17	26961724	26961724	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26961724	26961724	G	C	SNP	KIAA0100	NM_014680	human	genbank	57_37b	-1	validated	missense	c.2881	p.R961G	1.000	NULL	HMMPfam_Mqo,HMMPfam_Fmp27_GFWDK,HMMPfam_Apt1	-	no_errors
LCT	3938	genome.wustl.edu	37	2	136567537	136567537	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	136567537	136567537	G	A	SNP	LCT	NM_002299	human	genbank	57_37b	-1	reviewed	missense	c.2380	p.R794C	0.985	HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat	superfamily_Glyco_hydro_cat,HMMPfam_Glyco_hydro_1,PatternScan_GLYCOSYL_HYDROL_F1_2,PatternScan_GLYCOSYL_HYDROL_F1_1	-	no_errors
LOC100130819	0	genome.wustl.edu	37	2	132121350	132121350	+	Silent	SNP	G	G	C	rs1881001	byCluster;bySubmitter	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	132121350	132121350	G	C	SNP	LOC100130819	XM_001723908	human	genbank	57_37b	+1	model	silent	c.6	p.L2	0.996	NULL	NULL	-	
LOC728026	728026	genome.wustl.edu	37	9	97109768	97109768	+	Missense_Mutation	SNP	G	G	C	rs2479214	byCluster	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	97109768	97109768	G	C	SNP	LOC728026	XM_001126659	human	genbank	57_37b	-1	model	missense	c.78	p.D26E	0.997	HMMPfam_Prothymosin	HMMPfam_Prothymosin	-	
LOC728643	728643	genome.wustl.edu	37	10	47133833	47133833	+	RNA	SNP	A	A	G	rs4568947	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	47133833	47133833	A	G	SNP	LOC728643	NR_003277	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.990	-	-	-	
MUC7	4589	genome.wustl.edu	37	4	71346600	71346600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	71346600	71346600	C	T	SNP	MUC7	NM_001145006	human	genbank	57_37b	+1	reviewed	missense	c.139	p.H47Y	0.000	NULL	NULL	-	no_errors
MYO9A	4649	genome.wustl.edu	37	15	72170551	72170551	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72170551	72170551	G	A	SNP	MYO9A	NM_006901	human	genbank	57_37b	-1	validated	missense	c.5761	p.R1921W	1.000	NULL	HMMPfam_RA,HMMSmart_SM00314,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
MYST4	23522	genome.wustl.edu	37	10	76781040	76781040	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76781040	76781040	A	G	SNP	MYST4	NM_012330	human	genbank	57_37b	+1	validated	silent	c.3018	p.K1006	1.000	NULL	"HMMSmart_SM00526,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_MOZ_SAS"	-	no_errors
NBAS	51594	genome.wustl.edu	37	2	15374721	15374721	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	15374721	15374721	A	T	SNP	NBAS	NM_015909	human	genbank	57_37b	-1	validated	missense	c.6094	p.S2032T	0.680	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
NFRKB	4798	genome.wustl.edu	37	11	129754709	129754709	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	129754709	129754709	G	A	SNP	NFRKB	NM_006165	human	genbank	57_37b	-1	validated	missense	c.748	p.R250C	0.920	NULL	NULL	-	no_errors
NID2	22795	genome.wustl.edu	37	14	52493997	52493997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	52493997	52493997	G	A	SNP	NID2	NM_007361	human	genbank	57_37b	-1	validated	missense	c.2596	p.R866W	0.895	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
NOS1	4842	genome.wustl.edu	37	12	117723955	117723955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117723955	117723955	C	T	SNP	NOS1	NM_000620	human	genbank	57_37b	-1	reviewed	missense	c.1244	p.R415Q	1.000	superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
NRXN1	9378	genome.wustl.edu	37	2	50464028	50464028	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	50464028	50464028	C	T	SNP	NRXN1	NM_001135659	human	genbank	57_37b	-1	reviewed	missense	c.3565	p.A1189T	1.000	superfamily_ConA_like_lec_gl,HMMSmart_LamG	superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-	no_errors
OR13C8	138802	genome.wustl.edu	37	9	107331659	107331659	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107331659	107331659	G	A	SNP	OR13C8	NM_001004483	human	genbank	57_37b	+1	provisional	missense	c.211	p.V71I	0.999	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCOTH	542767	genome.wustl.edu	37	13	24465804	24465804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	24465804	24465804	G	A	SNP	PCOTH	NM_001135816	human	genbank	57_37b	+1	validated	missense	c.85	p.V29M	0.982	NULL	NULL	-	no_errors
PER3	8863	genome.wustl.edu	37	1	7863784	7863791	+	Frame_Shift_Del	DEL	CATTCTCC	CATTCTCC	-	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	CATTCTCC	CATTCTCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	7863784	7863791	CATTCTCC	-	DEL	PER3	NM_016831	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1009_1016	p.P339fs	1.000:1.000:0.909:0.897:0.655:0.394:0.928:0.937	superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	(deletion:cds_exon[7863752,7863908])	no_errors
PLCG1	5335	genome.wustl.edu	37	20	39802848	39802848	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	39802848	39802848	C	T	SNP	PLCG1	NM_002660	human	genbank	57_37b	+1	reviewed	nonsense	c.3730	p.R1244*	0.999	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,PatternScan_EF_HAND_1,superfamily_SSF47473,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	-	no_errors
PLD4	122618	genome.wustl.edu	37	14	105396393	105396393	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105396393	105396393	G	-	DEL	PLD4	NM_138790	human	genbank	57_37b	+1	validated	frame_shift_del	c.668	p.H224fs	0.765	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	(deletion:cds_exon[105396315,105396442])	no_errors
PTPRCAP	5790	genome.wustl.edu	37	11	67203502	67203502	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67203502	67203502	T	-	DEL	PTPRCAP	NM_005608	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.323	p.E108fs	0.876	NULL	NULL	(deletion:cds_exon[67203204,67203821])	no_errors
RB1	5925	genome.wustl.edu	37	13	48955538	48955538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	48955538	48955538	C	T	SNP	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	nonsense	c.1654	p.R552*	1.000	HMMPfam_RB_A,superfamily_Cyclin-like	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors
RBMXL3	139804	genome.wustl.edu	37	X	114426631	114426631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114426631	114426631	G	A	SNP	RBMXL3	NM_001145346	human	genbank	57_37b	+1	provisional	missense	c.2627	p.R876Q	0.879	NULL	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors
RREB1	6239	genome.wustl.edu	37	6	7211929	7211929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7211929	7211929	G	A	SNP	RREB1	NM_001003699	human	genbank	57_37b	+1	reviewed	missense	c.694	p.D232N	0.999	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
RSPH10B	222967	genome.wustl.edu	37	7	5966167	5966169	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5966167	5966169	GAA	-	DEL	RSPH10B	NM_173565	human	genbank	57_37b	-1	validated	in_frame_del	c.2445_2443	p.F815in_frame_del	0.000:0.001:0.002	NULL	HMMPfam_MORN,superfamily_SSF82185,HMMSmart_MORN	(deletion:cds_exon[5965999,5966179])	no_errors
SFMBT1	51460	genome.wustl.edu	37	3	52977509	52977509	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52977509	52977509	G	A	SNP	SFMBT1	NM_001005158	human	genbank	57_37b	-1	reviewed	missense	c.224	p.T75I	1.000	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
SH2B1	25970	genome.wustl.edu	37	16	28878058	28878058	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28878058	28878058	A	G	SNP	SH2B1	NM_015503	human	genbank	57_37b	+1	reviewed	missense	c.643	p.S215G	0.006	NULL	HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
SIGLEC1	6614	genome.wustl.edu	37	20	3683872	3683872	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3683872	3683872	G	A	SNP	SIGLEC1	NM_023068	human	genbank	57_37b	-1	reviewed	silent	c.1200	p.R400	0.635	superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors
STRN	6801	genome.wustl.edu	37	2	37085129	37085129	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	37085129	37085129	C	T	SNP	STRN	NM_003162	human	genbank	57_37b	-1	validated	silent	c.1707	p.T569	0.070	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMPfam_Striatin,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
SUOX	6821	genome.wustl.edu	37	12	56397811	56397813	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56397811	56397813	TCT	-	DEL	SUOX	NM_000456	human	genbank	57_37b	+1	reviewed	in_frame_del	c.638_640	p.F215in_frame_del	1.000:0.991:1.000	superfamily_Oxidored_molyb,HMMPfam_Oxidored_molyb	superfamily_Cyt_B5,HMMPfam_Cyt-b5,PatternScan_CYTOCHROME_B5_1,superfamily_Oxidored_molyb,HMMPfam_Oxidored_molyb,PatternScan_MOLYBDOPTERIN_EUK,HMMPfam_Mo-co_dimer,superfamily_Ig_E-set	(deletion:cds_exon[56397402,56398811])	no_errors
TATDN1	83940	genome.wustl.edu	37	8	125506171	125506171	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	125506171	125506171	G	A	SNP	TATDN1	NM_032026	human	genbank	57_37b	-1	validated	missense	c.694	p.H232Y	1.000	superfamily_Metallo-dependent hydrolases,HMMPfam_TatD_DNase	superfamily_Metallo-dependent hydrolases,HMMPfam_TatD_DNase,PatternScan_TATD_3	-	no_errors
TEKT2	27285	genome.wustl.edu	37	1	36553575	36553575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	36553575	36553575	G	A	SNP	TEKT2	NM_014466	human	genbank	57_37b	+1	reviewed	missense	c.1081	p.D361N	0.997	HMMPfam_Tektin	HMMPfam_Tektin	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578413	7578413	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578413	7578413	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.517	p.V173M	0.996	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TSC22D1	8848	genome.wustl.edu	37	13	45148691	45148693	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45148691	45148693	TGT	-	DEL	TSC22D1	NM_183422	human	genbank	57_37b	-1	validated	in_frame_del	c.1520_1518	p.Q509in_frame_del	0.003:0.003:0.004	NULL	PatternScan_TSC22,HMMPfam_TSC22	(deletion:cds_exon[45147299,45150210])	no_errors
TTC22	55001	genome.wustl.edu	37	1	55253434	55253434	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	55253434	55253434	G	A	SNP	TTC22	NM_001114108	human	genbank	57_37b	-1	validated	missense	c.689	p.T230M	0.976	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
ZNF33A	7581	genome.wustl.edu	37	10	38343498	38343498	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38343498	38343498	T	C	SNP	ZNF33A	NM_006954	human	genbank	57_37b	+1	validated	missense	c.446	p.F149S	0.027	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF501	115560	genome.wustl.edu	37	3	44776097	44776097	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FY-01A-11W-A050-09	TCGA-AN-A0FY-10A-01D-A047-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44776097	44776097	C	A	SNP	ZNF501	NM_145044	human	genbank	57_37b	+1	validated	missense	c.184	p.Q62K	0.006	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
