Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACACB	32	genome.wustl.edu	37	12	109678904	109678904	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109678904	109678904	A	T	SNP	ACACB	NM_001093	human	genbank	57_37b	+1	reviewed	missense	c.4840	p.M1614L	1.000	HMMPfam_ACC_central	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Rudiment single hybrid motif,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,HMMPfam_ACC_central,superfamily_ClpP/crotonase,HMMPfam_Carboxyl_trans	-	no_errors
AGGF1	55109	genome.wustl.edu	37	5	76349934	76349934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	76349934	76349934	G	A	SNP	AGGF1	NM_018046	human	genbank	57_37b	+1	validated	missense	c.1612	p.D538N	1.000	NULL	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
AIM1	202	genome.wustl.edu	37	6	106967048	106967048	+	Silent	SNP	T	T	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	106967048	106967048	T	A	SNP	AIM1	NM_001624	human	genbank	57_37b	+1	validated	silent	c.741	p.P247	0.956	NULL	superfamily_G_crystallin_SF,HMMSmart_XTALbg,HMMPfam_Crystall,superfamily_RicinB_like,HMMSmart_RICIN,HMMPfam_Ricin_B_lectin	-	no_errors
ANKRD17	26057	genome.wustl.edu	37	4	74019654	74019654	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74019654	74019654	T	C	SNP	ANKRD17	NM_032217	human	genbank	57_37b	-1	reviewed	missense	c.1177	p.I393V	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_MutS_V,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1	-	no_errors
ANKS1B	56899	genome.wustl.edu	37	12	99447042	99447042	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	99447042	99447042	C	T	SNP	ANKS1B	NM_152788	human	genbank	57_37b	-1	validated	missense	c.2671	p.E891K	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors
C20orf43	51507	genome.wustl.edu	37	20	55043817	55043817	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	55043817	55043817	G	C	SNP	C20orf43	NM_016407	human	genbank	57_37b	+1	validated	missense	c.64	p.E22Q	1.000	HMMPfam_DUF602	HMMPfam_DUF602	-	no_errors
C22orf30	253143	genome.wustl.edu	37	22	32111820	32111820	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	32111820	32111820	C	T	SNP	C22orf30	NM_173566	human	genbank	57_37b	-1	validated	missense	c.2005	p.D669N	0.000	NULL	NULL	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68849648	68849648	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68849648	68849648	G	-	DEL	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1551	p.E518fs	0.205	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	(deletion:cds_exon[68849418,68849662])	no_errors
CDH19	28513	genome.wustl.edu	37	18	64211462	64211462	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	64211462	64211462	C	T	SNP	CDH19	NM_021153	human	genbank	57_37b	-1	reviewed	splice_site	c.961-1	e6-1	1.000	-	-	-	no_errors
CELA3B	23436	genome.wustl.edu	37	1	22310738	22310738	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22310738	22310738	G	A	SNP	CELA3B	NM_007352	human	genbank	57_37b	+1	reviewed	missense	c.556	p.E186K	0.642	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CHI3L2	1117	genome.wustl.edu	37	1	111777558	111777558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	111777558	111777558	C	T	SNP	CHI3L2	NM_004000	human	genbank	57_37b	+1	validated	missense	c.359	p.S120L	0.000	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat	PatternScan_CHITINASE_18,HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat,superfamily_SSF54556	-	no_errors
CNST	0	genome.wustl.edu	37	1	246823579	246823579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	246823579	246823579	C	T	SNP	CNST	NM_152609	human	genbank	57_37b	+1	validated	missense	c.1915	p.H639Y	0.984	NULL	NULL	-	no_errors
COMMD6	170622	genome.wustl.edu	37	13	76111922	76111922	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	76111922	76111922	G	A	SNP	COMMD6	NM_203497	human	genbank	57_37b	-1	validated	missense	c.20	p.P7L	0.007	NULL	HMMPfam_HCaRG	-	no_errors
CORO1C	23603	genome.wustl.edu	37	12	109042522	109042522	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	109042522	109042522	G	C	SNP	CORO1C	NM_014325	human	genbank	57_37b	-1	reviewed	missense	c.1164	p.I388M	0.998	HMMPfam_DUF1900	HMMPfam_DUF1899,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_DUF1900	-	no_errors
CP110	9738	genome.wustl.edu	37	16	19547333	19547333	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19547333	19547333	C	T	SNP	CP110	NM_014711	human	genbank	57_37b	+1	validated	silent	c.342	p.V114	0.998	NULL	NULL	-	no_errors
CPN1	1369	genome.wustl.edu	37	10	101808562	101808562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101808562	101808562	C	T	SNP	CPN1	NM_001308	human	genbank	57_37b	-1	reviewed	missense	c.1183	p.D395N	0.002	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
CPNE1	8904	genome.wustl.edu	37	20	34215288	34215288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34215288	34215288	G	A	SNP	CPNE1	NM_003915	human	genbank	57_37b	-1	reviewed	missense	c.1165	p.R389C	0.968	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	HMMSmart_C2,HMMPfam_C2,superfamily_C2_CaLB,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_Copine	-	no_errors
CSE1L	1434	genome.wustl.edu	37	20	47686760	47686760	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47686760	47686760	G	A	SNP	CSE1L	NM_001316	human	genbank	57_37b	+1	reviewed	missense	c.694	p.E232K	1.000	superfamily_ARM repeat,HMMPfam_Cse1	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_Cse1,HMMPfam_CAS_CSE1	-	no_errors
CYP3A7	1551	genome.wustl.edu	37	7	99308411	99308411	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99308411	99308411	G	A	SNP	CYP3A7	NM_000765	human	genbank	57_37b	-1	reviewed	missense	c.970	p.H324Y	0.141	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DALRD3	55152	genome.wustl.edu	37	3	49053306	49053306	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49053306	49053306	C	T	SNP	DALRD3	NM_001009996	human	genbank	57_37b	-1	validated	splice_site	c.1444-1	e11-1	1.000	-	-	-	no_errors
DDX50	79009	genome.wustl.edu	37	10	70666626	70666626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70666626	70666626	G	T	SNP	DDX50	NM_024045	human	genbank	57_37b	+1	reviewed	missense	c.247	p.D83Y	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT	-	no_errors
DHRS7	51635	genome.wustl.edu	37	14	60611685	60611685	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	60611685	60611685	C	T	SNP	DHRS7	ENST00000360557	human	ensembl	57_37b	-1	known	missense	c.1015	p.E339K	0.911	NULL	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
DLGAP2	9228	genome.wustl.edu	37	8	1626478	1626478	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	1626478	1626478	G	T	SNP	DLGAP2	NM_004745	human	genbank	57_37b	+1	reviewed	missense	c.2147	p.G716V	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
DNAH12	201625	genome.wustl.edu	37	3	57443474	57443474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	57443474	57443474	G	A	SNP	DNAH12	NM_178504	human	genbank	57_37b	-1	validated	missense	c.3241	p.H1081Y	0.998	HMMPfam_DHC_N2	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DNAH2	146754	genome.wustl.edu	37	17	7627002	7627002	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7627002	7627002	G	C	SNP	DNAH2	NM_020877	human	genbank	57_37b	+1	validated	missense	c.223	p.D75H	0.327	NULL	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DNM1	1759	genome.wustl.edu	37	9	130982538	130982538	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130982538	130982538	G	T	SNP	DNM1	NM_004408	human	genbank	57_37b	+1	reviewed	missense	c.767	p.R256L	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_M	HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_GED,HMMSmart_SM00302	-	no_errors
ECM2	1842	genome.wustl.edu	37	9	95277306	95277306	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95277306	95277306	C	G	SNP	ECM2	NM_001393	human	genbank	57_37b	-1	reviewed	missense	c.661	p.E221Q	0.031	NULL	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
EDEM3	80267	genome.wustl.edu	37	1	184695514	184695518	+	Frame_Shift_Del	DEL	TTAAA	TTAAA	-	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	TTAAA	TTAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	184695514	184695518	TTAAA	-	DEL	EDEM3	NM_025191	human	genbank	57_37b	-1	validated	frame_shift_del	c.622_618	p.N206fs	1.000:1.000:1.000:1.000:1.000	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47,superfamily_SSF52025,HMMPfam_PA,PatternScan_ER_TARGET	(deletion:cds_exon[184695389,184695523])	no_errors
EID2B	126272	genome.wustl.edu	37	19	40023308	40023308	+	Silent	SNP	A	A	G	rs1123301	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40023308	40023308	A	G	SNP	EID2B	NM_152361	human	genbank	57_37b	-1	provisional	silent	c.135	p.A45	0.002	NULL	NULL	-	
EIF3E	3646	genome.wustl.edu	37	8	109260902	109260902	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	109260902	109260902	G	A	SNP	EIF3E	NM_001568	human	genbank	57_37b	-1	validated	silent	c.30	p.I10	1.000	HMMPfam_eIF3_N	"HMMPfam_eIF3_N,HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000198674	0	genome.wustl.edu	37	11	123865305	123865305	+	Silent	SNP	G	G	A	rs10790622	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123865305	123865305	G	A	SNP	ENSG00000198674	ENST00000307002	human	ensembl	57_37b	-1	known	silent	c.564	p.P188	0.807	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	
ENSG00000200579	0	genome.wustl.edu	37	3	38056061	38056061	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38056061	38056061	C	G	SNP	ENSG00000200579	ENST00000363709	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000228381	0	genome.wustl.edu	37	8	144689914	144689914	+	Silent	SNP	C	T	T	rs11136305	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144689914	144689914	C	T	SNP	ENSG00000228381	ENST00000442732	human	ensembl	57_37b	+1	known	silent	c.600	p.H200	0.380	NULL	NULL	-	
ENSG00000236699	0	genome.wustl.edu	37	4	106569810	106569810	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	106569810	106569810	C	T	SNP	ENSG00000236699	ENST00000420470	human	ensembl	57_37b	+1	known	silent	c.379	p.L127	1.000	HMMSmart_SM00721,HMMPfam_BAR	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00721,HMMPfam_BAR,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_SH3_1	-	no_errors
ENSG00000245898	0	genome.wustl.edu	37	7	44424983	44424983	+	RNA	SNP	T	T	C	rs17711306	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44424983	44424983	T	C	SNP	ENSG00000245898	ENST00000500718	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245979	0	genome.wustl.edu	37	15	51828120	51828120	+	RNA	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	51828120	51828120	T	C	SNP	ENSG00000245979	ENST00000501677	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ERAP2	64167	genome.wustl.edu	37	5	96237303	96237303	+	Missense_Mutation	SNP	G	G	A	rs113436741	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	96237303	96237303	G	A	SNP	ERAP2	NM_001130140	human	genbank	57_37b	+1	validated	missense	c.1666	p.G556R	0.667	NULL	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain,PatternScan_ZINC_PROTEASE"	-	
FBN1	2200	genome.wustl.edu	37	15	48780599	48780599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	48780599	48780599	G	A	SNP	FBN1	NM_000138	human	genbank	57_37b	-1	reviewed	silent	c.3174	p.G1058	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2	HMMSmart_SM00181,HMMPfam_EGF,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Growth factor receptor domain	-	no_errors
FLJ14186	401149	genome.wustl.edu	37	4	120330539	120330539	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	120330539	120330539	G	A	SNP	FLJ14186	XR_078311	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.979	-	-	-	no_errors
FOXP2	93986	genome.wustl.edu	37	7	114329880	114329880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	114329880	114329880	G	A	SNP	FOXP2	NM_148898	human	genbank	57_37b	+1	reviewed	missense	c.2122	p.E708K	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	no_errors
GABRG3	2567	genome.wustl.edu	37	15	27777879	27777879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	27777879	27777879	G	A	SNP	GABRG3	NM_033223	human	genbank	57_37b	+1	validated	missense	c.1256	p.C419Y	1.000	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
GLOD4	51031	genome.wustl.edu	37	17	685930	685930	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	685930	685930	G	A	SNP	GLOD4	ENST00000397393	human	ensembl	57_37b	-1	known	nonsense	c.187	p.Q63*	0.996	NULL	HMMPfam_Glyoxalase,superfamily_Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	-	no_errors
GOLM1	51280	genome.wustl.edu	37	9	88650389	88650389	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	88650389	88650389	C	T	SNP	GOLM1	NM_016548	human	genbank	57_37b	-1	reviewed	silent	c.909	p.Q303	0.013	NULL	NULL	-	no_errors
GPATCH4	54865	genome.wustl.edu	37	1	156565526	156565526	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156565526	156565526	C	G	SNP	GPATCH4	NM_015590	human	genbank	57_37b	-1	validated	missense	c.607	p.E203Q	0.936	NULL	HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
IFNA13	3447	genome.wustl.edu	37	9	21367848	21367848	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	21367848	21367848	C	T	SNP	IFNA13	NM_006900	human	genbank	57_37b	-1	validated	silent	c.162	p.L54	0.000	HMMPfam_Interferon,superfamily_4-helical cytokines	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D	-	no_errors
IL27RA	9466	genome.wustl.edu	37	19	14143266	14143266	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14143266	14143266	C	G	SNP	IL27RA	NM_004843	human	genbank	57_37b	+1	reviewed	missense	c.169	p.L57V	0.040	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
KLHDC10	23008	genome.wustl.edu	37	7	129761906	129761906	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	129761906	129761906	A	T	SNP	KLHDC10	NM_014997	human	genbank	57_37b	+1	validated	missense	c.643	p.I215F	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,HMMSmart_SM00612	-	no_errors
KPNA2	3838	genome.wustl.edu	37	17	66036815	66036815	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66036815	66036815	G	A	SNP	KPNA2	NM_002266	human	genbank	57_37b	+1	reviewed	missense	c.235	p.D79N	1.000	HMMPfam_IBB,superfamily_ARM repeat	HMMPfam_IBB,superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
KRI1	65095	genome.wustl.edu	37	19	10675704	10675704	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10675704	10675704	C	T	SNP	KRI1	NM_023008	human	genbank	57_37b	-1	validated	missense	c.193	p.D65N	1.000	NULL	HMMPfam_Kri1	-	no_errors
LLGL2	3993	genome.wustl.edu	37	17	73569149	73569149	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73569149	73569149	G	C	SNP	LLGL2	NM_001031803	human	genbank	57_37b	+1	reviewed	missense	c.2515	p.E839Q	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_LLGL,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
LOC643677	643677	genome.wustl.edu	37	13	103385449	103385449	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103385449	103385449	C	T	SNP	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	silent	c.17142	p.S5714	0.000	NULL	NULL	-	no_errors
LOC643677	643677	genome.wustl.edu	37	13	103393346	103393346	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103393346	103393346	A	G	SNP	LOC643677	XM_002344085	human	genbank	57_37b	-1	model	missense	c.9488	p.V3163A	0.000	NULL	NULL	-	no_errors
LOC653075	653075	genome.wustl.edu	37	15	30435865	30435865	+	RNA	SNP	C	C	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30435865	30435865	C	A	SNP	LOC653075	XR_078494	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.696	-	-	-	no_errors
LOC727924	727924	genome.wustl.edu	37	15	22347358	22347358	+	RNA	SNP	A	A	G	rs8023620	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	22347358	22347358	A	G	SNP	LOC727924	NR_015416	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-	
LOC728643	728643	genome.wustl.edu	37	10	47133816	47133816	+	RNA	SNP	T	T	A	rs4307655	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	47133816	47133816	T	A	SNP	LOC728643	NR_003277	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	1.000	-	-	-	
LOC91149	0	genome.wustl.edu	37	2	173590423	173590423	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	173590423	173590423	C	G	SNP	LOC91149	NR_026995	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
LRRC3B	116135	genome.wustl.edu	37	3	26751433	26751433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	26751433	26751433	G	A	SNP	LRRC3B	NM_052953	human	genbank	57_37b	+1	provisional	silent	c.270	p.L90	0.997	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
LRRTM2	26045	genome.wustl.edu	37	5	138210089	138210089	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	138210089	138210089	G	A	SNP	LRRTM2	NM_015564	human	genbank	57_37b	-1	validated	missense	c.161	p.S54L	1.000	superfamily_L domain-like	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
LTBP2	4053	genome.wustl.edu	37	14	74995673	74995673	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74995673	74995673	G	A	SNP	LTBP2	NM_000428	human	genbank	57_37b	-1	reviewed	silent	c.2140	p.L714	0.998	superfamily_TB module/8-cys domain,HMMPfam_TB	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
MACF1	23499	genome.wustl.edu	37	1	39798343	39798343	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	39798343	39798343	C	G	SNP	MACF1	NM_033044	human	genbank	57_37b	+1	reviewed	nonsense	c.1403	p.S468*	0.444	NULL	superfamily_SSF75399,HMMSmart_PLEC,HMMPfam_Plectin,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors
MAST4	23227	genome.wustl.edu	37	5	66438062	66438062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	66438062	66438062	G	A	SNP	MAST4	NM_015183	human	genbank	57_37b	+1	validated	missense	c.2047	p.D683N	1.000	HMMSmart_S_TK_X,HMMPfam_Pkinase_C	HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
MIPOL1	145282	genome.wustl.edu	37	14	37838826	37838826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	37838826	37838826	G	A	SNP	MIPOL1	NM_138731	human	genbank	57_37b	+1	validated	silent	c.933	p.L311	1.000	NULL	NULL	-	no_errors
MTMR4	9110	genome.wustl.edu	37	17	56573225	56573225	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56573225	56573225	C	A	SNP	MTMR4	NM_004687	human	genbank	57_37b	-1	validated	missense	c.2278	p.A760S	0.002	NULL	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
MYH6	4624	genome.wustl.edu	37	14	23871908	23871908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23871908	23871908	C	G	SNP	MYH6	NM_002471	human	genbank	57_37b	-1	validated	missense	c.1000	p.D334H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
NCRNA00174	285908	genome.wustl.edu	37	7	65842423	65842423	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	65842423	65842423	G	A	SNP	NCRNA00174	NR_026873	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.924	-	-	-	no_errors
NDFIP2	54602	genome.wustl.edu	37	13	80055541	80055541	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	80055541	80055541	C	T	SNP	NDFIP2	NM_019080	human	genbank	57_37b	+1	validated	missense	c.203	p.T68M	0.045	NULL	HMMPfam_DUF2370	-	no_errors
NDRG4	65009	genome.wustl.edu	37	16	58538514	58538514	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	58538514	58538514	C	T	SNP	NDRG4	NM_001130487	human	genbank	57_37b	+1	reviewed	silent	c.489	p.I163	0.001	superfamily_SSF53474,HMMPfam_Ndr	superfamily_SSF53474,HMMPfam_Ndr	-	no_errors
NEUROD6	63974	genome.wustl.edu	37	7	31378659	31378659	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	31378659	31378659	C	G	SNP	NEUROD6	NM_022728	human	genbank	57_37b	-1	provisional	missense	c.224	p.R75T	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
NFASC	23114	genome.wustl.edu	37	1	204923466	204923466	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204923466	204923466	C	G	SNP	NFASC	NM_015090	human	genbank	57_37b	+1	reviewed	missense	c.348	p.N116K	1.000	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG	HMMPfam_I-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
NKAIN4	128414	genome.wustl.edu	37	20	61879009	61879009	+	Missense_Mutation	SNP	G	G	T	rs2236194	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61879009	61879009	G	T	SNP	NKAIN4	NM_152864	human	genbank	57_37b	-1	validated	missense	c.392	p.A131D	1.000	HMMPfam_NKAIN	HMMPfam_NKAIN	-	
NUMB	8650	genome.wustl.edu	37	14	73743785	73743785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73743785	73743785	G	A	SNP	NUMB	NM_001005743	human	genbank	57_37b	-1	reviewed	missense	c.1457	p.A486V	1.000	NULL	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,HMMPfam_NumbF	-	no_errors
OBSL1	23363	genome.wustl.edu	37	2	220432006	220432006	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220432006	220432006	G	-	DEL	OBSL1	NM_015311	human	genbank	57_37b	-1	provisional	frame_shift_del	c.1826	p.S609fs	0.619	NULL	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,HMMPfam_fn3,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_V-set	(deletion:cds_exon[220431995,220432297])	no_errors
ODF2	4957	genome.wustl.edu	37	9	131256860	131256860	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131256860	131256860	G	A	SNP	ODF2	NM_002540	human	genbank	57_37b	+1	reviewed	silent	c.1752	p.A584	0.657	NULL	NULL	-	no_errors
PCDHB10	56126	genome.wustl.edu	37	5	140573243	140573243	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140573243	140573243	G	T	SNP	PCDHB10	NM_018930	human	genbank	57_37b	+1	reviewed	missense	c.1118	p.R373I	0.150	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
PCLO	27445	genome.wustl.edu	37	7	82595715	82595715	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	82595715	82595715	G	A	SNP	PCLO	NM_033026	human	genbank	57_37b	-1	validated	missense	c.3389	p.S1130L	0.005	NULL	superfamily_FYVE/PHD zinc finger,HMMPfam_zf-piccolo,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
PHF3	23469	genome.wustl.edu	37	6	64422600	64422600	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	64422600	64422600	A	C	SNP	PHF3	NM_015153	human	genbank	57_37b	+1	provisional	missense	c.5116	p.K1706Q	0.994	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Elongation factor TFIIS domain 2,HMMPfam_TFIIS_M,HMMSmart_SM00510,HMMPfam_SPOC	-	no_errors
PI4KA	5297	genome.wustl.edu	37	22	21159370	21159370	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	21159370	21159370	G	C	SNP	PI4KA	NM_058004	human	genbank	57_37b	-1	reviewed	missense	c.1078	p.L360V	1.000	NULL	superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIWIL4	143689	genome.wustl.edu	37	11	94318660	94318660	+	Missense_Mutation	SNP	C	C	T	rs117064881	by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94318660	94318660	C	T	SNP	PIWIL4	NM_152431	human	genbank	57_37b	+1	validated	missense	c.685	p.P229S	0.999	superfamily_PAZ domain	superfamily_PAZ domain,HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like	-	
PPAPDC1A	196051	genome.wustl.edu	37	10	122216862	122216862	+	Silent	SNP	C	C	T	rs67319648	byCluster;byFrequency;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	122216862	122216862	C	T	SNP	PPAPDC1A	NM_001030059	human	genbank	57_37b	+1	validated	silent	c.45	p.F15	1.000	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase	PatternScan_TUBULIN_B_AUTOREG,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMSmart_SM00014,HMMPfam_PAP2	-	
PRKDC	5591	genome.wustl.edu	37	8	48691190	48691190	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48691190	48691190	C	T	SNP	PRKDC	ENST00000314191	human	ensembl	57_37b	-1	known	missense	c.11680	p.E3894K	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
PSG4	5672	genome.wustl.edu	37	19	43699378	43699378	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43699378	43699378	C	G	SNP	PSG4	NM_002780	human	genbank	57_37b	-1	validated	missense	c.757	p.E253Q	0.005	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
RAPGEF6	51735	genome.wustl.edu	37	5	130841179	130841179	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	130841179	130841179	C	T	SNP	RAPGEF6	NM_016340	human	genbank	57_37b	-1	validated	missense	c.979	p.E327K	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding,superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_RA,HMMSmart_SM00314,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors
RARS2	57038	genome.wustl.edu	37	6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	88299660	88299660	G	A	SNP	RARS2	NM_020320	human	genbank	57_37b	-1	reviewed	missense	c.16	p.R6C	0.853	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain	superfamily_Arginyl-tRNA synthetase (ArgRS) N-terminal 'additional' domain,HMMPfam_tRNA-synt_1d,superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_DALR_1	-	no_errors
RASGEF1C	255426	genome.wustl.edu	37	5	179563435	179563435	+	Silent	SNP	T	T	C	rs11546322	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179563435	179563435	T	C	SNP	RASGEF1C	NM_175062	human	genbank	57_37b	-1	validated	silent	c.381	p.E127	0.970	superfamily_Ras GEF,HMMPfam_RasGEF_N	superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMSmart_SM00147,HMMPfam_RasGEF,PatternScan_RASGEF	-	
RHOBTB3	22836	genome.wustl.edu	37	5	95128768	95128768	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	95128768	95128768	G	C	SNP	RHOBTB3	NM_014899	human	genbank	57_37b	+1	validated	missense	c.1726	p.E576Q	1.000	NULL	superfamily_SSF52540,HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BTB	-	no_errors
RNF19A	25897	genome.wustl.edu	37	8	101272152	101272152	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	101272152	101272152	T	C	SNP	RNF19A	NM_015435	human	genbank	57_37b	-1	reviewed	missense	c.1756	p.T586A	0.998	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_IBR,HMMSmart_SM00647	-	no_errors
RNFT2	84900	genome.wustl.edu	37	12	117187907	117187907	+	Silent	SNP	T	T	C	rs111256849	byCluster;by1000genomes	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	117187907	117187907	T	C	SNP	RNFT2	NM_001109903	human	genbank	57_37b	+1	validated	silent	c.345	p.H115	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	
SEL1L	6400	genome.wustl.edu	37	14	81953845	81953845	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	81953845	81953845	C	T	SNP	SEL1L	NM_005065	human	genbank	57_37b	-1	validated	silent	c.1521	p.L507	1.000	superfamily_HCP-like,HMMPfam_Sel1,HMMSmart_SM00671	superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like	-	no_errors
SFRS12IP1	285672	genome.wustl.edu	37	5	64050168	64050168	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64050168	64050168	C	T	SNP	SFRS12IP1	NM_173829	human	genbank	57_37b	-1	validated	missense	c.35	p.R12K	1.000	NULL	HMMSmart_ZnF_C2HC	-	no_errors
SFRS15	57466	genome.wustl.edu	37	21	33067193	33067193	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33067193	33067193	A	G	SNP	SFRS15	NM_020706	human	genbank	57_37b	-1	reviewed	missense	c.1169	p.V390A	0.997	NULL	superfamily_ENTH/VHS domain,HMMSmart_SM00582,HMMPfam_DUF618,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
SIPA1L1	26037	genome.wustl.edu	37	14	72139081	72139081	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	72139081	72139081	G	A	SNP	SIPA1L1	NM_015556	human	genbank	57_37b	+1	provisional	missense	c.2846	p.C949Y	1.000	superfamily_PDZ domain-like	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SNORD83B	0	genome.wustl.edu	37	22	39710680	39710680	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39710680	39710680	C	G	SNP	SNORD83B	ENST00000501495	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
SOX5	6660	genome.wustl.edu	37	12	23687346	23687346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	23687346	23687346	C	T	SNP	SOX5	NM_006940	human	genbank	57_37b	-1	reviewed	missense	c.2099	p.S700N	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
SPTBN1	6711	genome.wustl.edu	37	2	54874276	54874276	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	54874276	54874276	G	A	SNP	SPTBN1	NM_003128	human	genbank	57_37b	+1	reviewed	silent	c.4875	p.Q1625	1.000	HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
STK38L	23012	genome.wustl.edu	37	12	27461300	27461300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	27461300	27461300	G	A	SNP	STK38L	NM_015000	human	genbank	57_37b	+1	validated	missense	c.215	p.R72H	1.000	superfamily_Kinase_like	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64580077	64580077	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64580077	64580077	G	A	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	missense	c.12628	p.E4210K	0.000	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
TFAP2A	7020	genome.wustl.edu	37	6	10404880	10404880	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10404880	10404880	C	T	SNP	TFAP2A	NM_003220	human	genbank	57_37b	-1	reviewed	missense	c.625	p.E209K	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
THOC1	9984	genome.wustl.edu	37	18	247878	247878	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	247878	247878	C	T	SNP	THOC1	NM_005131	human	genbank	57_37b	-1	validated	missense	c.757	p.E253K	1.000	NULL	superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
TJP1	7082	genome.wustl.edu	37	15	30003159	30003159	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30003159	30003159	C	T	SNP	TJP1	NM_003257	human	genbank	57_37b	-1	validated	silent	c.4248	p.E1416	0.997	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218	-	no_errors
TLN1	7094	genome.wustl.edu	37	9	35705643	35705643	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35705643	35705643	C	G	SNP	TLN1	NM_006289	human	genbank	57_37b	-1	reviewed	missense	c.5638	p.E1880Q	1.000	HMMPfam_VBS	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_Talin_cent,HMMPfam_Talin_middle,superfamily_SSF109885,HMMPfam_VBS,HMMSmart_ILWEQ,HMMPfam_I_LWEQ	-	no_errors
TMOD3	29766	genome.wustl.edu	37	15	52161504	52161504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	52161504	52161504	C	T	SNP	TMOD3	NM_014547	human	genbank	57_37b	+1	provisional	silent	c.217	p.L73	1.000	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
TRPC4AP	26133	genome.wustl.edu	37	20	33609154	33609154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33609154	33609154	T	C	SNP	TRPC4AP	NM_015638	human	genbank	57_37b	-1	validated	missense	c.1057	p.I353V	0.978	NULL	NULL	-	no_errors
TSC22D3	1831	genome.wustl.edu	37	X	107018376	107018376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107018376	107018376	G	A	SNP	TSC22D3	NM_198057	human	genbank	57_37b	-1	reviewed	missense	c.274	p.R92C	1.000	NULL	PatternScan_TSC22,HMMPfam_TSC22	-	no_errors
UBQLN1	29979	genome.wustl.edu	37	9	86294885	86294885	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	86294885	86294885	C	T	SNP	UBQLN1	NM_013438	human	genbank	57_37b	-1	reviewed	silent	c.516	p.Q172	1.000	NULL	superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin,HMMSmart_SM00727,superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103291157	103291157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103291157	103291157	C	T	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	missense	c.6185	p.R2062K	1.000	NULL	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
USPL1	10208	genome.wustl.edu	37	13	31233065	31233065	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	31233065	31233065	G	A	SNP	USPL1	NM_005800	human	genbank	57_37b	+1	validated	missense	c.2851	p.E951K	0.000	NULL	NULL	-	no_errors
WDR59	79726	genome.wustl.edu	37	16	74972086	74972086	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74972086	74972086	G	A	SNP	WDR59	NM_030581	human	genbank	57_37b	-1	validated	missense	c.613	p.H205Y	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00591,PatternScan_EGF_LAM_1	-	no_errors
WFDC6	140870	genome.wustl.edu	37	20	44166723	44166723	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	44166723	44166723	G	A	SNP	WFDC6	NM_080827	human	genbank	57_37b	-1	reviewed	silent	c.102	p.P34	0.376	HMMPfam_WAP,HMMSmart_WAP	HMMPfam_WAP,HMMSmart_WAP	-	no_errors
ZNF259	8882	genome.wustl.edu	37	11	116655592	116655592	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	116655592	116655592	G	A	SNP	ZNF259	NM_003904	human	genbank	57_37b	-1	provisional	nonsense	c.799	p.Q267*	0.954	HMMPfam_zf-ZPR1,HMMSmart_Zpr1	HMMPfam_zf-ZPR1,HMMSmart_Zpr1	-	no_errors
ZNF486	90649	genome.wustl.edu	37	19	20308257	20308257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0J9-01A-11W-A050-09	TCGA-AO-A0J9-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	20308257	20308257	C	T	SNP	ZNF486	NM_052852	human	genbank	57_37b	+1	provisional	silent	c.738	p.V246	0.048	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
