Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA2	20	genome.wustl.edu	37	9	139916833	139916833	+	Silent	SNP	T	T	G	rs35590326	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139916833	139916833	T	G	SNP	ABCA2	NM_212533	human	genbank	57_37b	-1	reviewed	silent	c.627	p.A209	0.005	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1,PatternScan_LIPOCALIN,PatternScan_EGF_1	-	
ADAMTSL4	54507	genome.wustl.edu	37	1	150531050	150531050	+	Silent	SNP	G	G	A	rs10749657	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150531050	150531050	G	A	SNP	ADAMTSL4	NM_019032	human	genbank	57_37b	+1	reviewed	silent	c.2484	p.P828	0.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC	-	
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	
APCDD1	147495	genome.wustl.edu	37	18	10487999	10487999	+	Silent	SNP	C	C	T	rs60421789	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	10487999	10487999	C	T	SNP	APCDD1	NM_153000	human	genbank	57_37b	+1	validated	silent	c.1509	p.C503	0.020	NULL	NULL	-	
C1orf26	54823	genome.wustl.edu	37	1	185153956	185153956	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	185153956	185153956	G	A	SNP	C1orf26	NM_001105518	human	genbank	57_37b	+1	validated	missense	c.1322	p.R441H	0.873	superfamily_SSF88723,HMMSmart_PINc	superfamily_SSF88723,HMMSmart_PINc	-	no_errors
C3orf18	51161	genome.wustl.edu	37	3	50598482	50598482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50598482	50598482	G	A	SNP	C3orf18	NM_016210	human	genbank	57_37b	-1	validated	missense	c.274	p.R92C	0.996	NULL	NULL	-	no_errors
C6orf103	79747	genome.wustl.edu	37	6	147073842	147073842	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	147073842	147073842	G	A	SNP	C6orf103	NM_024694	human	genbank	57_37b	+1	provisional	missense	c.3542	p.S1181N	1.000	NULL	superfamily_Cysteine proteinases,HMMSmart_SM00230,HMMPfam_IQ	-	no_errors
C8orf73	642475	genome.wustl.edu	37	8	144652149	144652149	+	Missense_Mutation	SNP	C	C	G	rs113705108	by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144652149	144652149	C	G	SNP	C8orf73	NM_001100878	human	genbank	57_37b	-1	validated	missense	c.1130	p.R377P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	
C9orf114	51490	genome.wustl.edu	37	9	131586374	131586374	+	Silent	SNP	G	G	A	rs7033070	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131586374	131586374	G	A	SNP	C9orf114	NM_016390	human	genbank	57_37b	-1	validated	silent	c.891	p.A297	0.911	superfamily_SSF75217,HMMPfam_DUF171	superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB	-	
CACNA1E	777	genome.wustl.edu	37	1	181701998	181701998	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	181701998	181701998	G	A	SNP	CACNA1E	NM_000721	human	genbank	57_37b	+1	reviewed	missense	c.2776	p.V926I	0.683	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CAPRIN1	4076	genome.wustl.edu	37	11	34113522	34113522	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	34113522	34113522	C	G	SNP	CAPRIN1	NM_005898	human	genbank	57_37b	+1	validated	missense	c.1624	p.Q542E	1.000	NULL	NULL	-	no_errors
CCDC86	79080	genome.wustl.edu	37	11	60610065	60610065	+	Silent	SNP	G	G	A	rs2074420	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60610065	60610065	G	A	SNP	CCDC86	NM_024098	human	genbank	57_37b	+1	validated	silent	c.468	p.P156	0.011	NULL	NULL	-	
CLDN6	9074	genome.wustl.edu	37	16	3065596	3065596	+	Missense_Mutation	SNP	T	T	C	rs2257295	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3065596	3065596	T	C	SNP	CLDN6	NM_021195	human	genbank	57_37b	-1	validated	missense	c.427	p.I143V	0.883	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	
CROCCL2	114819	genome.wustl.edu	37	1	16804875	16804875	+	RNA	SNP	C	C	T	rs156849	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16804875	16804875	C	T	SNP	CROCCL2	NR_023386	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.995	-	-	-	
CSPG4	1464	genome.wustl.edu	37	15	75982041	75982041	+	Silent	SNP	C	C	T	rs79474855	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75982041	75982041	C	T	SNP	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	silent	c.1365	p.T455	0.001	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	
DCAF12L2	340578	genome.wustl.edu	37	X	125299410	125299410	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	125299410	125299410	G	A	SNP	DCAF12L2	NM_001013628	human	genbank	57_37b	-1	provisional	silent	c.498	p.T166	0.039	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	no_errors
DIP2B	57609	genome.wustl.edu	37	12	51133229	51133229	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51133229	51133229	A	C	SNP	DIP2B	NM_173602	human	genbank	57_37b	+1	validated	missense	c.4214	p.Y1405S	1.000	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding	-	no_errors
DNAH11	8701	genome.wustl.edu	37	7	21639512	21639512	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21639512	21639512	C	T	SNP	DNAH11	NM_003777	human	genbank	57_37b	+1	reviewed	silent	c.2775	p.H925	0.995	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
DPPA3	359787	genome.wustl.edu	37	12	7867799	7867799	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7867799	7867799	G	A	SNP	DPPA3	NM_199286	human	genbank	57_37b	+1	reviewed	missense	c.103	p.E35K	0.028	NULL	NULL	-	no_errors
DUSP5	1847	genome.wustl.edu	37	10	112269992	112269992	+	Silent	SNP	G	G	C	rs114603867	by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	112269992	112269992	G	C	SNP	DUSP5	NM_004419	human	genbank	57_37b	+1	reviewed	silent	c.963	p.T321	0.399	NULL	superfamily_Rhodanese-like,HMMSmart_RHOD,superfamily_SSF52799,HMMPfam_DSPc,HMMSmart_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	
ENSG00000245549	0	genome.wustl.edu	37	1	16950783	16950783	+	RNA	SNP	T	T	A	rs2246249	byHapMap	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950783	16950783	T	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.983	-	-	-	
ENSG00000247051	0	genome.wustl.edu	37	16	4660247	4660247	+	RNA	SNP	G	A	A	rs863500	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4660247	4660247	G	A	SNP	ENSG00000247051	ENST00000500013	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ERC1	23085	genome.wustl.edu	37	12	1289751	1289751	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	1289751	1289751	A	T	SNP	ERC1	NM_178040	human	genbank	57_37b	+1	reviewed	missense	c.1783	p.S595C	1.000	HMMPfam_Cast,superfamily_Prefoldin	HMMPfam_Cast,superfamily_Prefoldin,HMMPfam_RBD-FIP	-	no_errors
ESPL1	9700	genome.wustl.edu	37	12	53681883	53681883	+	Missense_Mutation	SNP	A	A	T	rs1110719	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53681883	53681883	A	T	SNP	ESPL1	NM_012291	human	genbank	57_37b	+1	validated	missense	c.4304	p.K1435M	0.993	NULL	HMMPfam_Peptidase_C50	-	
FAM101A	144347	genome.wustl.edu	37	12	124798801	124798801	+	Silent	SNP	C	C	T	rs12318072	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	124798801	124798801	C	T	SNP	FAM101A	NM_181709	human	genbank	57_37b	+1	validated	silent	c.138	p.P46	0.020	NULL	NULL	-	
FGFBP2	83888	genome.wustl.edu	37	4	15964485	15964485	+	Missense_Mutation	SNP	G	G	A	rs758329	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15964485	15964485	G	A	SNP	FGFBP2	NM_031950	human	genbank	57_37b	-1	reviewed	missense	c.268	p.P90S	0.112	HMMPfam_FGF-BP1	HMMPfam_FGF-BP1	-	
GTSE1	51512	genome.wustl.edu	37	22	46704734	46704734	+	Missense_Mutation	SNP	C	C	T	rs34404175	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46704734	46704734	C	T	SNP	GTSE1	NM_016426	human	genbank	57_37b	+1	reviewed	missense	c.656	p.A219V	0.001	NULL	NULL	-	
GZMM	3004	genome.wustl.edu	37	19	548630	548630	+	Missense_Mutation	SNP	C	C	A	rs77680573	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	548630	548630	C	A	SNP	GZMM	NM_005317	human	genbank	57_37b	+1	reviewed	missense	c.301	p.R101S	0.014	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	
IQCE	23288	genome.wustl.edu	37	7	2629660	2629660	+	Silent	SNP	G	G	A	rs79515981	by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2629660	2629660	G	A	SNP	IQCE	NM_152558	human	genbank	57_37b	+1	validated	silent	c.1164	p.K388	0.565	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	
KANK4	163782	genome.wustl.edu	37	1	62713246	62713246	+	Silent	SNP	G	G	A	rs10889315	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62713246	62713246	G	A	SNP	KANK4	NM_181712	human	genbank	57_37b	-1	validated	silent	c.2781	p.H927	0.893	superfamily_Ankyrin repeat,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	
KDM4D	55693	genome.wustl.edu	37	11	94730906	94730906	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94730906	94730906	A	T	SNP	KDM4D	NM_018039	human	genbank	57_37b	+1	validated	nonsense	c.370	p.K124*	0.770	NULL	HMMPfam_JmjN,HMMSmart_JmjC,HMMPfam_JmjC	-	no_errors
LCN15	0	genome.wustl.edu	37	9	139657834	139657834	+	Silent	SNP	G	G	C	rs9987876	byCluster;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139657834	139657834	G	C	SNP	LCN15	NM_203347	human	genbank	57_37b	-1	provisional	silent	c.393	p.A131	0.171	superfamily_Calycin,HMMPfam_Lipocalin	superfamily_Calycin,PatternScan_LIPOCALIN,HMMPfam_Lipocalin	-	
LOC100289332	0	genome.wustl.edu	37	15	44581311	44581311	+	Missense_Mutation	SNP	C	C	T	rs77839597	byCluster;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44581311	44581311	C	T	SNP	LOC100289332	XM_002343343	human	genbank	57_37b	-1	model	missense	c.526	p.E176K	1.000	NULL	NULL	-	
MINK1	50488	genome.wustl.edu	37	17	4788835	4788835	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4788835	4788835	T	A	SNP	MINK1	NM_153827	human	genbank	57_37b	+1	reviewed	missense	c.566	p.I189N	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00036,HMMPfam_CNH	-	no_errors
MMP14	4323	genome.wustl.edu	37	14	23306048	23306048	+	Missense_Mutation	SNP	C	C	T	rs1042703	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23306048	23306048	C	T	SNP	MMP14	NM_004995	human	genbank	57_37b	+1	reviewed	missense	c.22	p.P8S	1.000	NULL	"superfamily_PGBD-like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMSmart_SM00235,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	
MUC5B	727897	genome.wustl.edu	37	11	1276395	1276395	+	Silent	SNP	G	G	A	rs55760402	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1276395	1276395	G	A	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	silent	c.15798	p.P5266	0.000	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	
NF1	4763	genome.wustl.edu	37	17	29562668	29562668	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	29562668	29562668	C	T	SNP	NF1	NM_001042492	human	genbank	57_37b	+1	reviewed	missense	c.3748	p.R1250W	1.000	HMMSmart_SM00323,superfamily_GTPase activation domain GAP	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228529848	228529848	+	Nonsense_Mutation	SNP	C	C	T	rs1188715	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228529848	228529848	C	T	SNP	OBSCN	ENST00000441106	human	ensembl	57_37b	+1	known	nonsense	c.1912	p.R638*	0.005	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	HMMSmart_SM00408,HMMPfam_I-set,HMMSmart_SM00409,superfamily_Immunoglobulin,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,PatternScan_PROTEIN_KINASE_TYR	-	
OTOF	9381	genome.wustl.edu	37	2	26699033	26699033	+	Silent	SNP	G	G	A	rs73920285	byCluster;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26699033	26699033	G	A	SNP	OTOF	NM_194248	human	genbank	57_37b	-1	reviewed	silent	c.2829	p.G943	1.000	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB	-	
PDLIM7	9260	genome.wustl.edu	37	5	176916555	176916555	+	Missense_Mutation	SNP	C	C	T	rs78448898	by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176916555	176916555	C	T	SNP	PDLIM7	ENST00000356618	human	ensembl	57_37b	-1	known	missense	c.646	p.G216R	0.746	NULL	HMMPfam_PDZ,superfamily_PDZ,HMMSmart_PDZ	-	
PEAR1	375033	genome.wustl.edu	37	1	156877797	156877797	+	Silent	SNP	C	C	A	rs77235035	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156877797	156877797	C	A	SNP	PEAR1	NM_001080471	human	genbank	57_37b	+1	provisional	silent	c.856	p.R286	0.992	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam	HMMPfam_EMI,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_Grow_fac_recept	-	
PHLPP2	23035	genome.wustl.edu	37	16	71701217	71701217	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71701217	71701217	G	A	SNP	PHLPP2	NM_015020	human	genbank	57_37b	-1	validated	missense	c.1648	p.L550F	1.000	superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369	superfamily_PH domain-like,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144994212	144994212	+	Silent	SNP	A	A	T	rs34644439	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144994212	144994212	A	T	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	silent	c.10188	p.S3396	0.919	NULL	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	
RBM12	10137	genome.wustl.edu	37	20	34240797	34240817	+	In_Frame_Del	DEL	AGGGGCACTTCCAAGACCAGG	AGGGGCACTTCCAAGACCAGG	-	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	AGGGGCACTTCCAAGACCAGG	AGGGGCACTTCCAAGACCAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34240797	34240817	AGGGGCACTTCCAAGACCAGG	-	DEL	RBM12	NM_006047	human	genbank	57_37b	-1	reviewed	in_frame_del	c.2448_2428	p.PGLGSAP810in_frame_del	0.779:0.766:0.312:0.067:0.071:0.067:0.063:0.045:0.094:0.448:0.997:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.996:1.000:1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	(deletion:cds_exon[34240446,34243244])	no_errors
RYR3	6263	genome.wustl.edu	37	15	34078003	34078003	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34078003	34078003	A	G	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	missense	c.9409	p.M3137V	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SALL1	6299	genome.wustl.edu	37	16	51175176	51175176	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	51175176	51175176	G	A	SNP	SALL1	NM_002968	human	genbank	57_37b	-1	reviewed	silent	c.957	p.I319	0.681	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SAMD10	140700	genome.wustl.edu	37	20	62607160	62607160	+	Silent	SNP	C	C	T	rs817343	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62607160	62607160	C	T	SNP	SAMD10	NM_080621	human	genbank	57_37b	-1	validated	silent	c.471	p.A157	0.626	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2	-	
SH2D2A	9047	genome.wustl.edu	37	1	156784982	156784982	+	Missense_Mutation	SNP	T	T	C	rs926103	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156784982	156784982	T	C	SNP	SH2D2A	NM_003975	human	genbank	57_37b	-1	validated	missense	c.155	p.N52S	0.000	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	
SLC39A4	55630	genome.wustl.edu	37	8	145640235	145640235	+	Missense_Mutation	SNP	C	C	T	rs7823979	byCluster;byFrequency;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145640235	145640235	C	T	SNP	SLC39A4	NM_130849	human	genbank	57_37b	-1	reviewed	missense	c.850	p.E284K	0.071	NULL	HMMPfam_Zip	-	
SLC7A4	6545	genome.wustl.edu	37	22	21386019	21386019	+	Missense_Mutation	SNP	G	G	A	rs2072550	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	21386019	21386019	G	A	SNP	SLC7A4	NM_004173	human	genbank	57_37b	-1	validated	missense	c.83	p.T28I	0.079	NULL	HMMPfam_AA_permease	-	
SLFN5	162394	genome.wustl.edu	37	17	33592829	33592829	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33592829	33592829	G	A	SNP	SLFN5	NM_144975	human	genbank	57_37b	+1	validated	silent	c.2598	p.P866	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_AAA_4,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SRRD	402055	genome.wustl.edu	37	22	26884108	26884108	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	26884108	26884108	G	A	SNP	SRRD	NM_001013694	human	genbank	57_37b	+1	validated	missense	c.364	p.V122M	0.000	NULL	HMMPfam_SRR1	-	no_errors
TSPAN11	441631	genome.wustl.edu	37	12	31135579	31135579	+	Missense_Mutation	SNP	T	T	C	rs2075333	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	31135579	31135579	T	C	SNP	TSPAN11	NM_001080509	human	genbank	57_37b	+1	validated	missense	c.569	p.V190A	0.002	HMMPfam_Tetraspannin,superfamily_Tetraspanin	PatternScan_TM4_1,HMMPfam_Tetraspannin,superfamily_Tetraspanin	-	
USP9X	8239	genome.wustl.edu	37	X	41084197	41084198	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41084197	41084198	-	A	INS	USP9X	NM_001039590	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.6954_6955	p.S2318fs	1.000:1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
VPS18	57617	genome.wustl.edu	37	15	41192558	41192558	+	Silent	SNP	T	T	C	rs595559	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41192558	41192558	T	C	SNP	VPS18	NM_020857	human	genbank	57_37b	+1	reviewed	silent	c.1542	p.T514	0.155	NULL	HMMPfam_Pep3_Vps18,superfamily_ARM repeat	-	
WBP2	23558	genome.wustl.edu	37	17	73843629	73843629	+	Silent	SNP	C	C	T	rs35071314	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73843629	73843629	C	T	SNP	WBP2	NM_012478	human	genbank	57_37b	-1	reviewed	silent	c.594	p.P198	0.981	HMMPfam_WWbp	HMMPfam_GRAM,HMMPfam_WWbp	-	
WDR26	80232	genome.wustl.edu	37	1	224607232	224607232	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	224607232	224607232	C	A	SNP	WDR26	NM_025160	human	genbank	57_37b	-1	reviewed	missense	c.409	p.D137Y	1.000	NULL	HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
ZNF324	25799	genome.wustl.edu	37	19	58982447	58982447	+	Silent	SNP	A	A	G	rs61742224	by1000genomes	TCGA-AO-A12H-01A-11D-A10Y-09	TCGA-AO-A12H-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58982447	58982447	A	G	SNP	ZNF324	NM_014347	human	genbank	57_37b	+1	provisional	silent	c.588	p.K196	0.001	NULL	HMMPfam_KRAB,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
