Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
BAG4	9530	genome.wustl.edu	37	8	38067960	38067963	+	Frame_Shift_Del	DEL	TGTT	TGTT	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	TGTT	TGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	38067960	38067963	TGTT	-	DEL	BAG4	NM_004874	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1323_1326	p.C443fs	0.999:1.000:1.000:0.990	superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG	superfamily_SSF63491,HMMPfam_BAG,HMMSmart_BAG	(deletion:cds_exon[38067526,38068011])	no_errors
C1QTNF4	114900	genome.wustl.edu	37	11	47611487	47611487	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47611487	47611487	G	A	SNP	C1QTNF4	NM_031909	human	genbank	57_37b	-1	validated	silent	c.876	p.D292	0.962	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
C20orf201	198437	genome.wustl.edu	37	20	62714783	62714783	+	Silent	SNP	C	C	G	rs6010717	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62714783	62714783	C	G	SNP	C20orf201	NM_001007125	human	genbank	57_37b	-1	predicted	silent	c.678	p.A226	0.000	NULL	NULL	-	
CCDC66	285331	genome.wustl.edu	37	3	56655847	56655849	+	RNA	DEL	AAA	AAA	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	56655847	56655849	AAA	-	DEL	CCDC66	NR_024460	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000:0.000:0.007	-	-	(deletion:rna[56655560,56655864])	no_errors
CD276	80381	genome.wustl.edu	37	15	73996066	73996066	+	Missense_Mutation	SNP	G	G	A	rs11574483	byCluster;byFrequency;by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	73996066	73996066	G	A	SNP	CD276	NM_001024736	human	genbank	57_37b	+1	validated	missense	c.800	p.R267H	0.958	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00407	-	
CELSR1	9620	genome.wustl.edu	37	22	46795613	46795613	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46795613	46795613	C	A	SNP	CELSR1	NM_014246	human	genbank	57_37b	-1	reviewed	splice_site	c.5412+1	e10+1	1.000	-	-	-	no_errors
CEP164	22897	genome.wustl.edu	37	11	117252486	117252487	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117252486	117252487	-	C	INS	CEP164	NM_014956	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1479_1480	p.P494fs	0.299:0.293	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW	-	no_errors
E2F4	1874	genome.wustl.edu	37	16	67229793	67229794	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67229793	67229794	-	CAG	INS	E2F4	NM_001950	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.917_918	p.310in_frame_insS	1.000:0.995	NULL	superfamily_SSF46785,HMMPfam_E2F_TDP	-	no_errors
EFHB	151651	genome.wustl.edu	37	3	19975051	19975051	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	19975051	19975051	C	T	SNP	EFHB	NM_144715	human	genbank	57_37b	-1	validated	missense	c.460	p.V154I	0.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
ENSG00000215147	0	genome.wustl.edu	37	5	37213798	37213798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	37213798	37213798	C	G	SNP	ENSG00000215147	ENST00000399674	human	ensembl	57_37b	-1	known	missense	c.2768	p.G923A	0.000	NULL	NULL	-	no_errors
ENSG00000246385	0	genome.wustl.edu	37	19	12814690	12814691	+	RNA	INS	-	-	CA	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12814690	12814691	-	CA	INS	ENSG00000246385	ENST00000500605	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000247947	0	genome.wustl.edu	37	22	46438960	46438960	+	RNA	SNP	C	T	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46438960	46438960	C	T	SNP	ENSG00000247947	ENST00000500674	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115873	8115874	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115873	8115874	-	C	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1222_1223	p.P409fs	0.876:0.903	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GLI3	2737	genome.wustl.edu	37	7	42007317	42007317	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	42007317	42007317	C	G	SNP	GLI3	NM_000168	human	genbank	57_37b	-1	reviewed	missense	c.2308	p.A770P	0.972	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GPS2	2874	genome.wustl.edu	37	17	7217398	7217398	+	Splice_Site	DEL	C	C	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7217398	7217398	C	-	DEL	GPS2	NM_004489	human	genbank	57_37b	-1	reviewed	splice_site_del	c.397+1	e4+1	1.000	-	-	(deletion:intron[7217308,7217398])	no_errors
HRC	3270	genome.wustl.edu	37	19	49657711	49657725	+	In_Frame_Del	DEL	CATCATCATCATCAT	CATCATCATCATCAT	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	CATCATCATCATCAT	CATCATCATCATCAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49657711	49657725	CATCATCATCATCAT	-	DEL	HRC	NM_002152	human	genbank	57_37b	-1	reviewed	in_frame_del	c.784_770	p.DDDDD257in_frame_del	0.165:0.109:0.119:0.136:0.120:0.147:0.127:0.067:0.074:0.005:0.003:0.023:0.006:0.000:0.004	NULL	HMMPfam_Hist_rich_Ca-bd	(deletion:cds_exon[49656664,49658494])	no_errors
IGF1R	3480	genome.wustl.edu	37	15	99478057	99478057	+	Silent	SNP	C	C	T	rs35449468	byFrequency	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	99478057	99478057	C	T	SNP	IGF1R	NM_000875	human	genbank	57_37b	+1	reviewed	silent	c.2961	p.Y987	0.967	superfamily_Kinase_like	superfamily_SSF52058,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Grow_fac_recept,HMMSmart_FU,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	
KCNH1	3756	genome.wustl.edu	37	1	210857470	210857470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	210857470	210857470	C	T	SNP	KCNH1	NM_172362	human	genbank	57_37b	-1	reviewed	missense	c.2123	p.R708Q	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
KCNN3	3782	genome.wustl.edu	37	1	154842200	154842205	+	In_Frame_Del	DEL	GCTGCT	GCTGCT	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	GCTGCT	GCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154842200	154842205	GCTGCT	-	DEL	KCNN3	NM_002249	human	genbank	57_37b	-1	reviewed	in_frame_del	c.241_236	p.QQ79in_frame_del	0.982:0.903:0.760:0.739:0.710:0.721	NULL	HMMPfam_SK_channel,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2,superfamily_Small-conductance potassium channel,HMMPfam_CaMBD	(deletion:cds_exon[154841508,154842440])	no_errors
KRTAP5-10	387273	genome.wustl.edu	37	11	71276657	71276657	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71276657	71276657	A	G	SNP	KRTAP5-10	NM_001012710	human	genbank	57_37b	+1	validated	silent	c.24	p.G8	0.965	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1	-	no_errors
LMBR1	64327	genome.wustl.edu	37	7	156521383	156521383	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	156521383	156521383	T	C	SNP	LMBR1	NM_022458	human	genbank	57_37b	-1	reviewed	silent	c.870	p.R290	1.000	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
LOC100287041	0	genome.wustl.edu	37	2	110873467	110873468	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	110873467	110873468	-	G	INS	LOC100287041	XM_002342263	human	genbank	57_37b	+1	model	frame_shift_ins	c.224_225	p.K79fs	1.000:1.000	NULL	NULL	-	no_errors
LOC100287951	0	genome.wustl.edu	37	4	10413217	10413217	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	10413217	10413217	G	A	SNP	LOC100287951	XM_002342440	human	genbank	57_37b	+1	model	silent	c.294	p.V98	0.032	HMMPfam_Tctex-1	HMMPfam_Tctex-1	-	no_errors
MADCAM1	8174	genome.wustl.edu	37	19	498524	498524	+	Silent	SNP	A	G	G	rs2302217	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	498524	498524	A	G	SNP	MADCAM1	NM_130760	human	genbank	57_37b	+1	reviewed	silent	c.366	p.P122	0.000	HMMPfam_Adhes-Ig_like,superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_Adhes-Ig_like	-	
MAP3K1	4214	genome.wustl.edu	37	5	56176548	56176548	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56176548	56176548	C	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.2098	p.Q700*	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56189442	56189442	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56189442	56189442	C	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.4474	p.Q1492fs	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56189358,56189507])	no_errors
MAPK8IP3	23162	genome.wustl.edu	37	16	1798259	1798259	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1798259	1798259	G	T	SNP	MAPK8IP3	NM_015133	human	genbank	57_37b	+1	reviewed	missense	c.1006	p.D336Y	1.000	NULL	HMMPfam_Jnk-SapK_ap_N,superfamily_WD40 repeat-like	-	no_errors
MST1P9	0	genome.wustl.edu	37	1	17086085	17086086	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17086085	17086086	-	C	INS	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	frame_shift_ins	c.812_811	p.A271fs	0.998:0.997	HMMSmart_SM00130,superfamily_Kringle-like	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-	no_errors
NLRP5	126206	genome.wustl.edu	37	19	56538873	56538873	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56538873	56538873	G	A	SNP	NLRP5	NM_153447	human	genbank	57_37b	+1	reviewed	missense	c.1274	p.R425H	0.019	HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT,superfamily_SSF52047	-	no_errors
NNT	23530	genome.wustl.edu	37	5	43702838	43702838	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43702838	43702838	G	C	SNP	NNT	NM_012343	human	genbank	57_37b	+1	reviewed	missense	c.3111	p.Q1037H	1.000	HMMPfam_PNTB,superfamily_SSF52467	superfamily_SSF52283,PatternScan_ALADH_PNT_1,HMMPfam_AlaDh_PNT_N,superfamily_NAD(P)-bd,HMMPfam_AlaDh_PNT_C,PatternScan_ALADH_PNT_2,HMMPfam_PNTB,superfamily_SSF52467	-	no_errors
OR2F1	26211	genome.wustl.edu	37	7	143657386	143657386	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	143657386	143657386	G	A	SNP	OR2F1	NM_012369	human	genbank	57_37b	+1	provisional	missense	c.323	p.G108D	0.690	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4C45	403257	genome.wustl.edu	37	11	48367308	48367308	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	48367308	48367308	G	T	SNP	OR4C45	ENST00000415304	human	ensembl	57_37b	-1	known	missense	c.529	p.H177N	0.631	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
PNCK	139728	genome.wustl.edu	37	X	152937334	152937334	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152937334	152937334	C	A	SNP	PNCK	NM_001039582	human	genbank	57_37b	-1	validated	splice_site	c.663+1	e5+1	1.000	-	-	-	no_errors
PRND	23627	genome.wustl.edu	37	20	4705266	4705266	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	4705266	4705266	G	A	SNP	PRND	NM_012409	human	genbank	57_37b	+1	reviewed	silent	c.69	p.A23	0.000	NULL	superfamily_Prion-like,HMMPfam_Prion	-	no_errors
RAD50	10111	genome.wustl.edu	37	5	131926953	131926953	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	131926953	131926953	T	C	SNP	RAD50	NM_005732	human	genbank	57_37b	+1	reviewed	missense	c.1490	p.V497A	0.996	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Spectrin repeat,HMMPfam_Rad50_zn_hook,superfamily_Prefoldin	-	no_errors
REXO1	57455	genome.wustl.edu	37	19	1819125	1819125	+	Missense_Mutation	SNP	T	C	C	rs2396359	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1819125	1819125	T	C	SNP	REXO1	NM_020695	human	genbank	57_37b	-1	validated	missense	c.2656	p.S886G	0.762	NULL	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	-	
SAMD9	54809	genome.wustl.edu	37	7	92733180	92733180	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92733180	92733180	G	C	SNP	SAMD9	NM_017654	human	genbank	57_37b	-1	validated	missense	c.2231	p.T744S	1.000	NULL	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
SREBF2	6721	genome.wustl.edu	37	22	42281016	42281016	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42281016	42281016	G	A	SNP	SREBF2	NM_004599	human	genbank	57_37b	+1	reviewed	splice_site	c.2208+1	e11+1	1.000	-	-	-	no_errors
STARD8	9754	genome.wustl.edu	37	X	67938433	67938433	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	67938433	67938433	C	T	SNP	STARD8	NM_001142503	human	genbank	57_37b	+1	validated	silent	c.1677	p.R559	0.259	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors
STK25	10494	genome.wustl.edu	37	2	242440175	242440175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242440175	242440175	C	T	SNP	STK25	NM_006374	human	genbank	57_37b	-1	provisional	missense	c.298	p.G100S	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
TBC1D29	26083	genome.wustl.edu	37	17	28887183	28887183	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28887183	28887183	C	T	SNP	TBC1D29	NM_015594	human	genbank	57_37b	+1	validated	missense	c.61	p.R21W	0.008	superfamily_RabGAP_TBC	superfamily_RabGAP_TBC	-	no_errors
TRIM71	131405	genome.wustl.edu	37	3	32933156	32933156	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	32933156	32933156	G	T	SNP	TRIM71	NM_001039111	human	genbank	57_37b	+1	provisional	missense	c.2460	p.M820I	1.000	superfamily_SSF101898,HMMPfam_NHL	HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_Filamin,HMMSmart_IG_FLMN,superfamily_Ig_E-set,superfamily_SSF101898,HMMPfam_NHL	-	no_errors
TRIP4	9325	genome.wustl.edu	37	15	64701983	64701983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	64701983	64701983	G	A	SNP	TRIP4	NM_016213	human	genbank	57_37b	+1	validated	silent	c.999	p.R333	1.000	NULL	HMMPfam_zf-C2HC5,HMMPfam_ASCH	-	no_errors
TRO	7216	genome.wustl.edu	37	X	54955782	54955782	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54955782	54955782	G	A	SNP	TRO	NM_001039705	human	genbank	57_37b	+1	reviewed	silent	c.2625	p.T875	0.000	NULL	HMMPfam_MAGE	-	no_errors
UNC13B	10497	genome.wustl.edu	37	9	35376118	35376118	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35376118	35376118	C	G	SNP	UNC13B	NM_006377	human	genbank	57_37b	+1	reviewed	missense	c.1462	p.P488A	1.000	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD	-	no_errors
WHAMML1	339005	genome.wustl.edu	37	15	23191911	23191911	+	RNA	SNP	C	C	T	rs692550	byCluster;bySubmitter;by2Hit2Allele	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23191911	23191911	C	T	SNP	WHAMML1	NR_003521	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.992	-	-	-	
ZBTB49	0	genome.wustl.edu	37	4	4322466	4322466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	4322466	4322466	G	A	SNP	ZBTB49	NM_145291	human	genbank	57_37b	+1	validated	missense	c.1721	p.R574H	0.974	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF277	11179	genome.wustl.edu	37	7	111982649	111982649	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	111982649	111982649	C	G	SNP	ZNF277	NM_021994	human	genbank	57_37b	+1	validated	silent	c.1218	p.L406	0.983	NULL	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF416	55659	genome.wustl.edu	37	19	58083540	58083540	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0IM-01A-11W-A050-09	TCGA-B6-A0IM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58083540	58083540	G	A	SNP	ZNF416	NM_017879	human	genbank	57_37b	-1	provisional	missense	c.1732	p.R578C	0.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
