Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA1	19	genome.wustl.edu	37	9	107550711	107550711	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107550711	107550711	C	G	SNP	ABCA1	NM_005502	human	genbank	57_37b	-1	reviewed	missense	c.6065	p.G2022A	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67645518	67645518	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67645518	67645518	T	G	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	splice_site	c.781+2	e1+2	1.000	-	-	-	no_errors
CYP2D7P1	1564	genome.wustl.edu	37	22	42537329	42537329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	42537329	42537329	C	T	SNP	CYP2D7P1	ENST00000436260	human	ensembl	57_37b	-1	known	missense	c.1006	p.D336N	0.981	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
FAM49B	51571	genome.wustl.edu	37	8	130891697	130891697	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	130891697	130891697	A	C	SNP	FAM49B	NM_016623	human	genbank	57_37b	-1	predicted	missense	c.11	p.L4R	1.000	NULL	HMMPfam_DUF1394	-	no_errors
FTMT	94033	genome.wustl.edu	37	5	121187814	121187814	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	121187814	121187814	C	T	SNP	FTMT	NM_177478	human	genbank	57_37b	+1	validated	silent	c.156	p.A52	0.000	NULL	PatternScan_FERRITIN_1,superfamily_Ferritin/RR_like,HMMPfam_Ferritin,PatternScan_FERRITIN_2	-	no_errors
HIVEP3	59269	genome.wustl.edu	37	1	41979156	41979156	+	Silent	SNP	A	A	G	rs615177	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41979156	41979156	A	G	SNP	HIVEP3	NM_024503	human	genbank	57_37b	-1	validated	silent	c.5736	p.A1912	0.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	
IL21	59067	genome.wustl.edu	37	4	123536991	123536991	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	123536991	123536991	G	T	SNP	IL21	NM_021803	human	genbank	57_37b	-1	validated	missense	c.206	p.T69K	0.772	NULL	NULL	-	no_errors
LRBA	987	genome.wustl.edu	37	4	151392804	151392804	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	151392804	151392804	C	T	SNP	LRBA	NM_006726	human	genbank	57_37b	-1	validated	silent	c.6672	p.E2224	0.992	superfamily_BEACH domain,HMMPfam_Beach	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	12016657	12016663	+	Frame_Shift_Del	DEL	GGCTGTA	GGCTGTA	-	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	GGCTGTA	GGCTGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12016657	12016663	GGCTGTA	-	DEL	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.793_799	p.C266fs	1.000:1.000:0.992:1.000:1.000:1.000:1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[12016550,12016677])	no_errors
MSTN	2660	genome.wustl.edu	37	2	190922215	190922215	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190922215	190922215	G	A	SNP	MSTN	NM_005259	human	genbank	57_37b	-1	reviewed	silent	c.897	p.I299	0.992	superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	HMMPfam_TGFb_propeptide,PatternScan_EF_HAND_1,superfamily_Cystine-knot cytokines,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1	-	no_errors
OR56B4	196335	genome.wustl.edu	37	11	6129525	6129526	+	In_Frame_Ins	INS	-	-	ACT	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6129525	6129526	-	ACT	INS	OR56B4	NM_001005181	human	genbank	57_37b	+1	provisional	in_frame_ins	c.517_518	p.175in_frame_insY	0.000:0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PKN2	5586	genome.wustl.edu	37	1	89299057	89299057	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	89299057	89299057	C	T	SNP	PKN2	NM_006256	human	genbank	57_37b	+1	validated	nonsense	c.2881	p.R961*	1.000	HMMSmart_S_TK_X,HMMPfam_Pkinase_C	superfamily_PKN_effector,HMMSmart_Hr1,HMMPfam_HR1,superfamily_C2_CaLB,HMMSmart_C2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
RDH13	112724	genome.wustl.edu	37	19	55570574	55570574	+	Silent	SNP	A	A	G	rs1654447	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55570574	55570574	A	G	SNP	RDH13	ENST00000415061	human	ensembl	57_37b	-1	known	silent	c.135	p.G45	0.019	superfamily_NAD(P)-bd,HMMPfam_adh_short	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	
SLC26A4	5172	genome.wustl.edu	37	7	107342369	107342370	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	107342369	107342370	-	A	INS	SLC26A4	NM_000441	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1901_1902	p.E635fs	1.000:0.980	superfamily_STAS,HMMPfam_STAS	PatternScan_SLC26A,HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16263797	16263797	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16263797	16263797	C	G	SNP	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	missense	c.10166	p.S3389C	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors
SPG20	23111	genome.wustl.edu	37	13	36886475	36886475	+	Silent	SNP	T	T	G	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	36886475	36886475	T	G	SNP	SPG20	NM_001142294	human	genbank	57_37b	-1	reviewed	silent	c.1623	p.V541	0.998	NULL	HMMSmart_MIT,HMMPfam_MIT	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115117430	115117431	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115117430	115117431	-	T	INS	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.744_743	p.Y248fs	1.000:1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
THOC2	57187	genome.wustl.edu	37	X	122830573	122830573	+	Silent	SNP	G	G	C	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	122830573	122830573	G	C	SNP	THOC2	NM_001081550	human	genbank	57_37b	-1	validated	silent	c.465	p.L155	0.482	NULL	NULL	-	no_errors
USP36	57602	genome.wustl.edu	37	17	76799549	76799549	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76799549	76799549	C	T	SNP	USP36	NM_025090	human	genbank	57_37b	-1	validated	missense	c.2728	p.A910T	0.000	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors
UTP20	27340	genome.wustl.edu	37	12	101723202	101723202	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	101723202	101723202	C	T	SNP	UTP20	NM_014503	human	genbank	57_37b	+1	validated	missense	c.3392	p.S1131L	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_DRIM	-	no_errors
WNT2B	7482	genome.wustl.edu	37	1	113057615	113057615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	113057615	113057615	G	A	SNP	WNT2B	NM_024494	human	genbank	57_37b	+1	reviewed	missense	c.302	p.R101Q	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZC3H18	124245	genome.wustl.edu	37	16	88690436	88690436	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88690436	88690436	A	-	DEL	ZC3H18	NM_144604	human	genbank	57_37b	+1	validated	frame_shift_del	c.1864	p.K622fs	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_SM00356	(deletion:cds_exon[88690366,88690470])	no_errors
