Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
C11orf85	283129	genome.wustl.edu	37	11	64715283	64715283	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64715283	64715283	T	C	SNP	C11orf85	NM_001037225	human	genbank	57_37b	-1	predicted	missense	c.358	p.I120V	0.000	NULL	NULL	-	no_errors
C13orf35	400165	genome.wustl.edu	37	13	113333710	113333710	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	113333710	113333710	C	T	SNP	C13orf35	NM_207440	human	genbank	57_37b	+1	provisional	missense	c.17	p.A6V	0.000	NULL	NULL	-	no_errors
COL4A2	1284	genome.wustl.edu	37	13	111132707	111132707	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111132707	111132707	G	C	SNP	COL4A2	NM_001846	human	genbank	57_37b	+1	reviewed	missense	c.2728	p.D910H	0.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_C4,superfamily_C-type_lectin_fold	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950261	16950261	+	RNA	SNP	G	G	C	rs11260845	byCluster;by2Hit2Allele	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950261	16950261	G	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.687	-	-	-	
FATE1	89885	genome.wustl.edu	37	X	150890415	150890415	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150890415	150890415	G	C	SNP	FATE1	NM_033085	human	genbank	57_37b	+1	reviewed	missense	c.382	p.E128Q	0.572	NULL	NULL	-	no_errors
GPR173	54328	genome.wustl.edu	37	X	53106370	53106370	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53106370	53106370	C	T	SNP	GPR173	NM_018969	human	genbank	57_37b	+1	reviewed	silent	c.567	p.F189	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
GYLTL1B	120071	genome.wustl.edu	37	11	45945056	45945056	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	45945056	45945056	T	G	SNP	GYLTL1B	NM_152312	human	genbank	57_37b	+1	validated	missense	c.318	p.H106Q	0.886	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glyco_transf_8	-	no_errors
HSPA12B	116835	genome.wustl.edu	37	20	3721471	3721471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3721471	3721471	C	T	SNP	HSPA12B	NM_052970	human	genbank	57_37b	+1	reviewed	missense	c.53	p.P18L	0.883	NULL	PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_SSF53067	-	no_errors
KCNH6	81033	genome.wustl.edu	37	17	61619707	61619707	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61619707	61619707	G	-	DEL	KCNH6	NM_030779	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2060	p.A688fs	1.000	superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	(deletion:cds_exon[61619602,61619795])	no_errors
LOC100288324	0	genome.wustl.edu	37	X	110644257	110644257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	110644257	110644257	G	A	SNP	LOC100288324	XM_002343839	human	genbank	57_37b	+1	model	missense	c.220	p.G74S	0.080	NULL	NULL	-	no_errors
MXRA5	25878	genome.wustl.edu	37	X	3228364	3228364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3228364	3228364	C	T	SNP	MXRA5	NM_015419	human	genbank	57_37b	-1	validated	missense	c.7880	p.R2627K	0.855	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors
NLRP13	126204	genome.wustl.edu	37	19	56423854	56423854	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56423854	56423854	G	C	SNP	NLRP13	NM_176810	human	genbank	57_37b	-1	validated	nonsense	c.1329	p.Y443*	0.000	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMPfam_LRR_1	-	no_errors
TARBP1	6894	genome.wustl.edu	37	1	234565071	234565071	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	234565071	234565071	C	A	SNP	TARBP1	NM_005646	human	genbank	57_37b	-1	reviewed	splice_site	c.2872-1	e17-1	1.000	-	-	-	no_errors
TBL2	26608	genome.wustl.edu	37	7	72992858	72992858	+	Missense_Mutation	SNP	C	C	G	rs76029572	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72992858	72992858	C	G	SNP	TBL2	NM_012453	human	genbank	57_37b	-1	reviewed	missense	c.22	p.E8Q	0.876	NULL	HMMSmart_WD40,HMMPfam_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	
TMEM57	55219	genome.wustl.edu	37	1	25785067	25785067	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	25785067	25785067	G	C	SNP	TMEM57	NM_018202	human	genbank	57_37b	+1	validated	missense	c.838	p.D280H	1.000	HMMPfam_Macoilin	HMMPfam_Macoilin,superfamily_Prefoldin	-	no_errors
TNS1	7145	genome.wustl.edu	37	2	218712887	218712889	+	In_Frame_Del	DEL	GCT	GCT	-	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	218712887	218712889	GCT	-	DEL	TNS1	NM_022648	human	genbank	57_37b	-1	reviewed	in_frame_del	c.1978_1976	p.Q659in_frame_del	1.000:1.000:0.994	NULL	superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	(deletion:cds_exon[218712233,218713810])	no_errors
WNT9A	7483	genome.wustl.edu	37	1	228113112	228113112	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0RT-01A-21D-A099-09	TCGA-B6-A0RT-10A-01D-A099-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228113112	228113112	C	A	SNP	WNT9A	NM_003395	human	genbank	57_37b	-1	validated	missense	c.204	p.Q68H	0.999	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
