Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACCN1	40	genome.wustl.edu	37	17	31618732	31618732	+	Silent	SNP	A	A	G	rs9893935	byCluster;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	31618732	31618732	A	G	SNP	ACCN1	NM_183377	human	genbank	57_37b	-1	reviewed	silent	c.402	p.T134	1.000	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	
ALG10	84920	genome.wustl.edu	37	12	34177061	34177061	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	34177061	34177061	T	G	SNP	ALG10	NM_032834	human	genbank	57_37b	+1	reviewed	nonsense	c.336	p.Y112*	0.999	HMMPfam_DIE2_ALG10	HMMPfam_DIE2_ALG10	-	no_errors
APC	324	genome.wustl.edu	37	5	112177345	112177345	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	112177345	112177345	A	G	SNP	APC	NM_000038	human	genbank	57_37b	+1	reviewed	silent	c.6054	p.P2018	0.325	HMMPfam_APC_crr	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
ARID1B	57492	genome.wustl.edu	37	6	157454190	157454190	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	157454190	157454190	T	-	DEL	ARID1B	NM_017519	human	genbank	57_37b	+1	validated	frame_shift_del	c.2187	p.Q730fs	0.997	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	(deletion:cds_exon[157454162,157454341])	no_errors
AZGP1P1	646282	genome.wustl.edu	37	7	99580907	99580907	+	Missense_Mutation	SNP	C	C	G	rs2301806	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99580907	99580907	C	G	SNP	AZGP1P1	ENST00000398087	human	ensembl	57_37b	+1	known	missense	c.208	p.P70A	0.000	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	
C17orf102	0	genome.wustl.edu	37	17	32906038	32906038	+	Missense_Mutation	SNP	G	G	C	rs117721431	by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	32906038	32906038	G	C	SNP	C17orf102	NM_207454	human	genbank	57_37b	-1	validated	missense	c.262	p.R88G	0.000	NULL	NULL	-	
C4BPB	725	genome.wustl.edu	37	1	207262894	207262894	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207262894	207262894	G	A	SNP	C4BPB	NM_000716	human	genbank	57_37b	+1	reviewed	silent	c.18	p.A6	0.000	NULL	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
COL14A1	7373	genome.wustl.edu	37	8	121282319	121282319	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121282319	121282319	C	T	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	missense	c.3119	p.S1040F	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
DHX37	57647	genome.wustl.edu	37	12	125434716	125434716	+	Silent	SNP	G	G	A	rs4078216	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125434716	125434716	G	A	SNP	DHX37	NM_032656	human	genbank	57_37b	-1	reviewed	silent	c.3195	p.A1065	0.992	NULL	PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	
DLEC1	9940	genome.wustl.edu	37	3	38163187	38163187	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	38163187	38163187	G	A	SNP	DLEC1	NM_007337	human	genbank	57_37b	+1	reviewed	silent	c.4935	p.G1645	0.984	NULL	NULL	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950346	16950346	+	RNA	SNP	A	A	C	rs9663015	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950346	16950346	A	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.002	-	-	-	
ENSG00000246486	0	genome.wustl.edu	37	7	102024248	102024248	+	RNA	SNP	T	A	A	rs10953363	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	102024248	102024248	T	A	SNP	ENSG00000246486	ENST00000499628	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.028	-	-	-	
ENSG00000247485	0	genome.wustl.edu	37	7	98648365	98648365	+	RNA	SNP	C	G	G	rs3294	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	98648365	98648365	C	G	SNP	ENSG00000247485	ENST00000502039	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.014	-	-	-	
ENSG00000247823	0	genome.wustl.edu	37	1	41494222	41494222	+	RNA	SNP	G	G	T	rs11578697	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41494222	41494222	G	T	SNP	ENSG00000247823	ENST00000421714	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENTPD5	957	genome.wustl.edu	37	14	74436746	74436746	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	74436746	74436746	A	G	SNP	ENTPD5	NM_001249	human	genbank	57_37b	-1	reviewed	silent	c.1167	p.D389	0.756	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
ESR2	2100	genome.wustl.edu	37	14	64694310	64694310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64694310	64694310	G	C	SNP	ESR2	NM_001040275	human	genbank	57_37b	-1	reviewed	missense	c.1429	p.L477V	0.000	superfamily_Nuclear receptor ligand-binding domain,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
EXOC7	23265	genome.wustl.edu	37	17	74084953	74084953	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74084953	74084953	G	A	SNP	EXOC7	NM_001145297	human	genbank	57_37b	-1	validated	missense	c.1252	p.R418W	1.000	HMMPfam_Exo70	HMMPfam_Exo70	-	no_errors
FLJ10357	55701	genome.wustl.edu	37	14	21542766	21542766	+	Missense_Mutation	SNP	A	G	G	rs12889267	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21542766	21542766	A	G	SNP	FLJ10357	NM_018071	human	genbank	57_37b	+1	validated	missense	c.877	p.K293E	0.997	NULL	superfamily_DBL homology domain (DH-domain),superfamily_PH domain-like,HMMSmart_SM00233	-	
GCC2	9648	genome.wustl.edu	37	2	109099566	109099566	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	109099566	109099566	C	A	SNP	GCC2	NM_181453	human	genbank	57_37b	+1	reviewed	missense	c.3394	p.Q1132K	1.000	NULL	HMMPfam_GRIP,HMMSmart_Grip	-	no_errors
GRIN1	2902	genome.wustl.edu	37	9	140051238	140051238	+	Silent	SNP	A	A	G	rs6293	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140051238	140051238	A	G	SNP	GRIN1	NM_007327	human	genbank	57_37b	+1	reviewed	silent	c.789	p.P263	0.442	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like II,HMMSmart_SM00079,HMMPfam_Lig_chan-Glu_bd,superfamily_Voltage-gated potassium channels,HMMPfam_Lig_chan,HMMPfam_CaM_bdg_C0	-	
HSPG2	3339	genome.wustl.edu	37	1	22168845	22168845	+	Missense_Mutation	SNP	A	A	T	rs2229489	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22168845	22168845	A	T	SNP	HSPG2	ENST00000374695	human	ensembl	57_37b	-1	known	missense	c.8939	p.L2980H	0.267	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	HMMPfam_SEA,HMMSmart_SM00200,HMMPfam_Ldl_recept_a,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMSmart_SM00281,HMMPfam_Laminin_B,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_LAM_1,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMPfam_EGF,HMMPfam_Laminin_G_1	-	
IDUA	3425	genome.wustl.edu	37	4	995476	995476	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	995476	995476	A	C	SNP	IDUA	NM_000203	human	genbank	57_37b	+1	reviewed	missense	c.599	p.N200T	1.000	HMMPfam_Glyco_hydro_39,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_39,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F39,superfamily_SSF51011	-	no_errors
IFRD1	3475	genome.wustl.edu	37	7	112112289	112112289	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	112112289	112112289	A	G	SNP	IFRD1	NM_001007245	human	genbank	57_37b	+1	validated	missense	c.1057	p.T353A	1.000	NULL	HMMPfam_IFRD,superfamily_ARM repeat,HMMPfam_IFRD_C	-	no_errors
IKBKE	9641	genome.wustl.edu	37	1	206651107	206651107	+	Silent	SNP	G	G	A	rs2297545	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206651107	206651107	G	A	SNP	IKBKE	NM_014002	human	genbank	57_37b	+1	validated	silent	c.717	p.T239	0.002	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ST,HMMPfam_Pkinase,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	
INSL3	3640	genome.wustl.edu	37	19	17927802	17927802	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17927802	17927802	G	A	SNP	INSL3	NM_005543	human	genbank	57_37b	-1	reviewed	missense	c.257	p.T86M	0.000	superfamily_Insulin-like,HMMPfam_Insulin,HMMSmart_SM00078	superfamily_Insulin-like,HMMPfam_Insulin,HMMSmart_SM00078,PatternScan_INSULIN	-	no_errors
ITGB3BP	23421	genome.wustl.edu	37	1	63955841	63955841	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	63955841	63955841	A	T	SNP	ITGB3BP	NM_014288	human	genbank	57_37b	-1	provisional	missense	c.97	p.S33T	0.981	NULL	HMMPfam_NRIF3	-	no_errors
ITIH1	3697	genome.wustl.edu	37	3	52813627	52813627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52813627	52813627	G	A	SNP	ITIH1	ENST00000480409	human	ensembl	57_37b	+1	known	missense	c.590	p.R197Q	0.000	NULL	HMMSmart_SM00609,HMMPfam_VIT	-	no_errors
KLHDC9	126823	genome.wustl.edu	37	1	161068836	161068836	+	Missense_Mutation	SNP	A	A	C	rs11576830	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161068836	161068836	A	C	SNP	KLHDC9	NM_152366	human	genbank	57_37b	+1	validated	missense	c.511	p.S171R	0.001	superfamily_Galactose oxidase central domain	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2	-	
LAMA5	3911	genome.wustl.edu	37	20	60927412	60927412	+	Silent	SNP	G	G	A	rs624313	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60927412	60927412	G	A	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	silent	c.573	p.S191	0.996	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like	HMMSmart_SM00136,HMMPfam_Laminin_N,superfamily_Galactose-binding domain-like,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMSmart_SM00181,PatternScan_EGF_2,HMMSmart_SM00281,HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMPfam_Laminin_I,HMMPfam_Laminin_II,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	
LCN12	286256	genome.wustl.edu	37	9	139848688	139848688	+	Missense_Mutation	SNP	C	C	T	rs4880175	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139848688	139848688	C	T	SNP	LCN12	ENST00000371632	human	ensembl	57_37b	+1	known	missense	c.257	p.S86L	0.000	NULL	NULL	-	
LRP4	4038	genome.wustl.edu	37	11	46916348	46916348	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46916348	46916348	G	A	SNP	LRP4	NM_002334	human	genbank	57_37b	-1	validated	silent	c.1332	p.F444	1.000	superfamily_YWTD domain	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
MAPK14	1432	genome.wustl.edu	37	6	36063825	36063825	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	36063825	36063825	G	T	SNP	MAPK14	NM_139012	human	genbank	57_37b	+1	reviewed	missense	c.744	p.K248N	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK	-	no_errors
MLL2	8085	genome.wustl.edu	37	12	49427652	49427652	+	Silent	SNP	C	C	T	rs3782357	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49427652	49427652	C	T	SNP	MLL2	NM_003482	human	genbank	57_37b	-1	validated	silent	c.10836	p.Q3612	0.996	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_RECOMBINASES_2,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	
MYO15A	51168	genome.wustl.edu	37	17	18057167	18057167	+	Missense_Mutation	SNP	A	A	T	rs712270	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18057167	18057167	A	T	SNP	MYO15A	NM_016239	human	genbank	57_37b	+1	reviewed	missense	c.8045	p.Y2682F	0.997	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	
MYO9B	4650	genome.wustl.edu	37	19	17317955	17317955	+	Silent	SNP	A	A	G	rs8110964	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17317955	17317955	A	G	SNP	MYO9B	NM_004145	human	genbank	57_37b	+1	reviewed	silent	c.5526	p.S1842	0.003	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	HMMPfam_RA,HMMSmart_RA,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	
N4BP3	23138	genome.wustl.edu	37	5	177548592	177548592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177548592	177548592	C	T	SNP	N4BP3	NM_015111	human	genbank	57_37b	+1	validated	missense	c.1225	p.R409W	1.000	HMMPfam_Fez1	HMMPfam_Fez1	-	no_errors
NSUN5	55695	genome.wustl.edu	37	7	72718330	72718330	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72718330	72718330	A	G	SNP	NSUN5	NM_148956	human	genbank	57_37b	-1	reviewed	silent	c.831	p.S277	0.005	superfamily_SSF53335	superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu	-	no_errors
OR5W2	390148	genome.wustl.edu	37	11	55681318	55681318	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55681318	55681318	C	T	SNP	OR5W2	NM_001001960	human	genbank	57_37b	-1	provisional	silent	c.741	p.A247	0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCDHA13	56136	genome.wustl.edu	37	5	140263290	140263290	+	Silent	SNP	T	T	G	rs251380	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140263290	140263290	T	G	SNP	PCDHA13	NM_018904	human	genbank	57_37b	+1	reviewed	silent	c.1437	p.A479	0.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	
PFKP	5214	genome.wustl.edu	37	10	3155698	3155698	+	Missense_Mutation	SNP	C	T	T	rs4881086	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	3155698	3155698	C	T	SNP	PFKP	ENST00000413079	human	ensembl	57_37b	+1	known	missense	c.49	p.R17C	0.001	HMMPfam_PFK,superfamily_Phosphofructokinase	HMMPfam_PFK,superfamily_Phosphofructokinase	-	
PFKP	5214	genome.wustl.edu	37	10	3172121	3172121	+	Missense_Mutation	SNP	C	C	T	rs1052333	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	3172121	3172121	C	T	SNP	PFKP	ENST00000413079	human	ensembl	57_37b	+1	known	missense	c.484	p.R162W	0.002	HMMPfam_PFK,superfamily_Phosphofructokinase	HMMPfam_PFK,superfamily_Phosphofructokinase	-	
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121909229	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89692905	89692905	G	A	SNP	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	missense	c.389	p.R130Q	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_DSPc,HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	
RAB3IL1	5866	genome.wustl.edu	37	11	61675644	61675644	+	Missense_Mutation	SNP	T	T	C	rs174477	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61675644	61675644	T	C	SNP	RAB3IL1	NM_013401	human	genbank	57_37b	-1	provisional	missense	c.146	p.Q49R	0.085	NULL	HMMPfam_Sec2p	-	
RHEBL1	121268	genome.wustl.edu	37	12	49459216	49459216	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49459216	49459216	T	C	SNP	RHEBL1	NM_144593	human	genbank	57_37b	-1	provisional	splice_site	c.381-2	e7-2	0.997	-	-	-	no_errors
RPTOR	57521	genome.wustl.edu	37	17	78896529	78896529	+	Silent	SNP	C	C	T	rs2271603	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78896529	78896529	C	T	SNP	RPTOR	NM_020761	human	genbank	57_37b	+1	reviewed	silent	c.2526	p.T842	0.006	NULL	superfamily_ARM repeat,HMMPfam_HEAT,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	
SF3B1	23451	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	198266834	198266834	T	C	SNP	SF3B1	NM_012433	human	genbank	57_37b	-1	reviewed	missense	c.2098	p.K700E	1.000	superfamily_ARM repeat,HMMPfam_HEAT	HMMPfam_SF3b1,superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
SLC16A8	23539	genome.wustl.edu	37	22	38477930	38477930	+	Silent	SNP	G	G	A	rs2235573	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38477930	38477930	G	A	SNP	SLC16A8	NM_013356	human	genbank	57_37b	-1	validated	silent	c.324	p.L108	1.000	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	
SLFN14	342618	genome.wustl.edu	37	17	33884703	33884703	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33884703	33884703	G	A	SNP	SLFN14	NM_001129820	human	genbank	57_37b	-1	provisional	missense	c.379	p.R127C	0.794	NULL	HMMPfam_AAA_4	-	no_errors
SOX30	11063	genome.wustl.edu	37	5	157078475	157078475	+	Silent	SNP	C	C	G	rs3749797	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	157078475	157078475	C	G	SNP	SOX30	NM_178424	human	genbank	57_37b	-1	reviewed	silent	c.612	p.P204	0.000	NULL	superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	
SUPT5H	6829	genome.wustl.edu	37	19	39949655	39949655	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39949655	39949655	G	A	SNP	SUPT5H	NM_001111020	human	genbank	57_37b	+1	validated	missense	c.400	p.E134K	1.000	NULL	HMMPfam_Supt5,HMMSmart_SM00738,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain,HMMPfam_KOW	-	no_errors
TMEM170A	124491	genome.wustl.edu	37	16	75485640	75485640	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	75485640	75485640	T	G	SNP	TMEM170A	NM_145254	human	genbank	57_37b	-1	provisional	missense	c.231	p.K77N	1.000	HMMPfam_Tmemb_170	HMMPfam_Tmemb_170	-	no_errors
XYLT2	64132	genome.wustl.edu	37	17	48431032	48431032	+	Silent	SNP	G	G	A	rs739990	byCluster;bySubmitter;by1000genomes	TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48431032	48431032	G	A	SNP	XYLT2	NM_022167	human	genbank	57_37b	+1	reviewed	silent	c.177	p.E59	1.000	NULL	HMMPfam_Branch	-	
