Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
CCDC14	64770	genome.wustl.edu	37	3	123667564	123667564	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123667564	123667564	G	A	SNP	CCDC14	NM_022757	human	genbank	57_37b	-1	validated	missense	c.679	p.P227S	0.040	NULL	PatternScan_COPPER_BLUE	-	no_errors
CCDC159	126075	genome.wustl.edu	37	19	11462767	11462768	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11462767	11462768	-	A	INS	CCDC159	NM_001080503	human	genbank	57_37b	+1	validated	frame_shift_ins	c.525_526	p.N175fs	0.242:0.583	NULL	NULL	-	no_errors
CHST5	23563	genome.wustl.edu	37	16	75563330	75563330	+	Missense_Mutation	SNP	G	G	A	rs3826107	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	75563330	75563330	G	A	SNP	CHST5	NM_024533	human	genbank	57_37b	-1	validated	missense	c.953	p.T318M	0.998	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	
COL6A1	1291	genome.wustl.edu	37	21	47423507	47423507	+	Silent	SNP	G	G	A	rs1053315	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47423507	47423507	G	A	SNP	COL6A1	NM_001848	human	genbank	57_37b	+1	reviewed	silent	c.2667	p.A889	0.045	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_Collagen	-	
ENSG00000204597	0	genome.wustl.edu	37	19	53716278	53716278	+	Missense_Mutation	SNP	A	A	G	rs10853858	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53716278	53716278	A	G	SNP	ENSG00000204597	ENST00000344759	human	ensembl	57_37b	+1	known	missense	c.40	p.K14E	0.737	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
ENSG00000245330	0	genome.wustl.edu	37	8	120885944	120885944	+	RNA	SNP	T	T	C	rs7840156	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	120885944	120885944	T	C	SNP	ENSG00000245330	ENST00000500705	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.999	-	-	-	
ENSG00000247765	0	genome.wustl.edu	37	15	21941695	21941695	+	RNA	SNP	C	C	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941695	21941695	C	T	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
ERO1L	30001	genome.wustl.edu	37	14	53145184	53145184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	53145184	53145184	C	T	SNP	ERO1L	NM_014584	human	genbank	57_37b	-1	provisional	missense	c.325	p.V109I	1.000	superfamily_ERO1,HMMPfam_ERO1	superfamily_ERO1,HMMPfam_ERO1	-	no_errors
FAM166A	401565	genome.wustl.edu	37	9	140139614	140139618	+	Frame_Shift_Del	DEL	CGTCT	CGTCT	-	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	CGTCT	CGTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140139614	140139618	CGTCT	-	DEL	FAM166A	NM_001001710	human	genbank	57_37b	-1	predicted	frame_shift_del	c.579_575	p.E192fs	0.600:0.949:0.965:0.970:0.962	NULL	HMMPfam_DUF2475	(deletion:cds_exon[140139541,140139670])	no_errors
FAM78A	286336	genome.wustl.edu	37	9	134136463	134136463	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134136463	134136463	T	G	SNP	FAM78A	NM_033387	human	genbank	57_37b	-1	validated	missense	c.598	p.T200P	1.000	NULL	NULL	-	no_errors
FMO6P	388714	genome.wustl.edu	37	1	171121268	171121268	+	Silent	SNP	G	G	A	rs7886938	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171121268	171121268	G	A	SNP	FMO6P	ENST00000236166	human	ensembl	57_37b	+1	known	silent	c.1047	p.E349	0.995	HMMPfam_FMO-like	superfamily_SSF51905,HMMPfam_FMO-like	-	
FRG1	2483	genome.wustl.edu	37	4	190876224	190876224	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	190876224	190876224	T	G	SNP	FRG1	NM_004477	human	genbank	57_37b	+1	reviewed	missense	c.350	p.L117R	1.000	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	-	no_errors
GMIP	51291	genome.wustl.edu	37	19	19744614	19744614	+	Missense_Mutation	SNP	C	C	T	rs73004988	byCluster;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19744614	19744614	C	T	SNP	GMIP	NM_016573	human	genbank	57_37b	-1	reviewed	missense	c.2470	p.E824K	0.205	NULL	HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_SSF57889,HMMPfam_C1_1,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	
GSPT1	2935	genome.wustl.edu	37	16	11988808	11988809	+	Splice_Site	INS	-	-	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	11988808	11988809	-	A	INS	GSPT1	NM_002094	human	genbank	57_37b	-1	validated	splice_site_ins	c.698+2_698+1	e5+2	1.000:1.000	-	-	-	no_errors
GTPBP2	54676	genome.wustl.edu	37	6	43593250	43593250	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43593250	43593250	C	G	SNP	GTPBP2	NM_019096	human	genbank	57_37b	-1	validated	missense	c.555	p.K185N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,HMMPfam_GTP_EFTU_D3	-	no_errors
HADHA	3030	genome.wustl.edu	37	2	26432729	26432729	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26432729	26432729	T	C	SNP	HADHA	NM_000182	human	genbank	57_37b	-1	reviewed	silent	c.1005	p.E335	1.000	superfamily_ClpP/crotonase	superfamily_ClpP/crotonase,HMMPfam_ECH,PatternScan_ENOYL_COA_HYDRATASE,superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_3HCDH_N,PatternScan_3HCDH,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_3HCDH	-	no_errors
HELZ	9931	genome.wustl.edu	37	17	65145995	65145995	+	Silent	SNP	A	A	C	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	65145995	65145995	A	C	SNP	HELZ	NM_014877	human	genbank	57_37b	-1	validated	silent	c.2463	p.G821	1.000	superfamily_SSF52540	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH,superfamily_SSF52540,HMMPfam_PAM2	-	no_errors
HERC6	55008	genome.wustl.edu	37	4	89304502	89304502	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	89304502	89304502	G	A	SNP	HERC6	NM_017912	human	genbank	57_37b	+1	validated	missense	c.329	p.G110E	0.824	superfamily_RCC1/BLIP-II,HMMPfam_RCC1	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
HNRPDL	9987	genome.wustl.edu	37	4	83350954	83350954	+	RNA	SNP	C	C	T	rs2516817	byCluster;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83350954	83350954	C	T	SNP	HNRPDL	NR_003249	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.064	-	-	-	
KCND1	3750	genome.wustl.edu	37	X	48826456	48826458	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48826456	48826458	AGA	-	DEL	KCND1	NM_004979	human	genbank	57_37b	-1	reviewed	in_frame_del	c.223_221	p.F74in_frame_del	1.000:1.000:1.000	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	(deletion:cds_exon[48825558,48826678])	no_errors
KCNJ15	3772	genome.wustl.edu	37	21	39671581	39671581	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	39671581	39671581	G	A	SNP	KCNJ15	NM_002243	human	genbank	57_37b	+1	reviewed	missense	c.398	p.R133H	1.000	superfamily_SSF81324,HMMPfam_IRK	superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-	no_errors
KCNJ16	3773	genome.wustl.edu	37	17	68128759	68128759	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	68128759	68128759	G	A	SNP	KCNJ16	NM_018658	human	genbank	57_37b	+1	reviewed	silent	c.531	p.K177	1.000	HMMPfam_IRK,superfamily_Ig_E-set	superfamily_SSF81324,HMMPfam_IRK,superfamily_Ig_E-set	-	no_errors
KLRC1	3821	genome.wustl.edu	37	12	10600155	10600155	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10600155	10600155	A	G	SNP	KLRC1	NM_002259	human	genbank	57_37b	-1	reviewed	missense	c.566	p.M189T	0.001	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
KRT17	3872	genome.wustl.edu	37	17	39779209	39779209	+	Missense_Mutation	SNP	G	G	A	rs115084509	by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39779209	39779209	G	A	SNP	KRT17	NM_000422	human	genbank	57_37b	-1	reviewed	missense	c.508	p.R170C	1.000	HMMPfam_Filament	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	
LMLN	89782	genome.wustl.edu	37	3	197765775	197765775	+	RNA	SNP	G	G	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	197765775	197765775	G	A	SNP	LMLN	NR_026786	human	genbank	57_37b	+1	reviewed	rna	NULL	NULL	0.169	-	-	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151882645	151882646	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151882645	151882646	-	A	INS	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.5080_5079	p.V1693fs	1.000:1.000	HMMSmart_SM00398,HMMPfam_HMG_box	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
NALCN	259232	genome.wustl.edu	37	13	101759935	101759935	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	101759935	101759935	C	G	SNP	NALCN	NM_052867	human	genbank	57_37b	-1	validated	missense	c.2482	p.E828Q	1.000	superfamily_Voltage-gated potassium channels	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
NSUN5B	155400	genome.wustl.edu	37	7	75044928	75044928	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	75044928	75044928	G	T	SNP	NSUN5B	ENST00000427550	human	ensembl	57_37b	+1	known	missense	c.16	p.A6S	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
OR5J2	282775	genome.wustl.edu	37	11	55944758	55944758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55944758	55944758	C	T	SNP	OR5J2	NM_001005492	human	genbank	57_37b	+1	provisional	missense	c.665	p.A222V	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PHLDB2	90102	genome.wustl.edu	37	3	111632538	111632538	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111632538	111632538	A	G	SNP	PHLDB2	NM_001134438	human	genbank	57_37b	+1	validated	missense	c.1708	p.I570V	0.999	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
PIWIL4	143689	genome.wustl.edu	37	11	94308183	94308183	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	94308183	94308183	C	G	SNP	PIWIL4	NM_152431	human	genbank	57_37b	+1	validated	missense	c.185	p.S62C	0.973	NULL	superfamily_PAZ domain,HMMPfam_PAZ,HMMPfam_Piwi,superfamily_Ribonuclease H-like	-	no_errors
PTPRB	5787	genome.wustl.edu	37	12	70925884	70925884	+	Silent	SNP	T	T	C	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70925884	70925884	T	C	SNP	PTPRB	NM_001109754	human	genbank	57_37b	-1	reviewed	silent	c.6435	p.K2145	0.972	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	superfamily_Ricin B-like lectins,HMMPfam_Ricin_B_lectin,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
SERPIND1	3053	genome.wustl.edu	37	22	21138494	21138494	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	21138494	21138494	C	G	SNP	SERPIND1	NM_000185	human	genbank	57_37b	+1	reviewed	missense	c.1124	p.P375R	1.000	superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093	PatternScan_TONB_DEPENDENT_REC_1,superfamily_Serpins,HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN	-	no_errors
SLC25A10	1468	genome.wustl.edu	37	17	79682051	79682051	+	Silent	SNP	C	C	T	rs3204270	byCluster;byFrequency;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79682051	79682051	C	T	SNP	SLC25A10	NM_012140	human	genbank	57_37b	+1	provisional	silent	c.162	p.T54	0.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	
SMAD9	4093	genome.wustl.edu	37	13	37453778	37453778	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	37453778	37453778	C	T	SNP	SMAD9	NM_001127217	human	genbank	57_37b	-1	reviewed	missense	c.49	p.A17T	1.000	superfamily_SMAD MH1 domain	superfamily_SMAD MH1 domain,HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	-	no_errors
STK38L	23012	genome.wustl.edu	37	12	27470270	27470270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	27470270	27470270	C	T	SNP	STK38L	NM_015000	human	genbank	57_37b	+1	validated	missense	c.839	p.A280V	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
TPCN1	53373	genome.wustl.edu	37	12	113728784	113728784	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	113728784	113728784	A	T	SNP	TPCN1	NM_001143819	human	genbank	57_37b	+1	validated	missense	c.2156	p.N719I	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
UBE2A	7319	genome.wustl.edu	37	X	118715485	118715485	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118715485	118715485	C	-	DEL	UBE2A	NM_003336	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.167	p.T56fs	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	(deletion:cds_exon[118715470,118715559])	no_errors
VPS13D	55187	genome.wustl.edu	37	1	12331106	12331106	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12331106	12331106	A	G	SNP	VPS13D	NM_015378	human	genbank	57_37b	+1	reviewed	silent	c.2028	p.Q676	0.998	NULL	superfamily_UBA-like,HMMPfam_UBA,HMMSmart_SM00165,HMMPfam_DUF1162	-	no_errors
VPS54	51542	genome.wustl.edu	37	2	64148420	64148420	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	64148420	64148420	T	C	SNP	VPS54	NM_016516	human	genbank	57_37b	-1	reviewed	missense	c.1789	p.N597D	1.000	NULL	HMMPfam_Vps54	-	no_errors
VSIG8	391123	genome.wustl.edu	37	1	159827578	159827580	+	In_Frame_Del	DEL	TGA	TGA	-	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	TGA	TGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	159827578	159827580	TGA	-	DEL	VSIG8	NM_001013661	human	genbank	57_37b	-1	provisional	in_frame_del	c.609_607	p.S203in_frame_del	0.909:0.997:1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_V-set,HMMSmart_SM00406	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_V-set,HMMSmart_SM00406,HMMSmart_SM00408	(deletion:cds_exon[159827535,159827756])	no_errors
ZFP36L2	678	genome.wustl.edu	37	2	43452183	43452183	+	Silent	SNP	A	A	G	rs7933	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	43452183	43452183	A	G	SNP	ZFP36L2	NM_006887	human	genbank	57_37b	-1	reviewed	silent	c.760	p.L254	1.000	NULL	HMMPfam_Tis11B_N,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	
ZNF292	23036	genome.wustl.edu	37	6	87964453	87964456	+	Frame_Shift_Del	DEL	TATC	TATC	-	novel	unknown	TCGA-B6-A0WV-01A-11D-A10G-09	TCGA-B6-A0WV-10A-01D-A10G-09	TATC	TATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	87964453	87964456	TATC	-	DEL	ZNF292	NM_015021	human	genbank	57_37b	+1	validated	frame_shift_del	c.1106_1109	p.S370fs	1.000:0.995:1.000:1.000	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[87964368,87971519])	no_errors
