Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AASDH	132949	genome.wustl.edu	37	4	57216157	57216157	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57216157	57216157	C	-	DEL	AASDH	NM_181806	human	genbank	57_37b	-1	validated	frame_shift_del	c.1760	p.G587fs	1.000	superfamily_ACP-like,HMMPfam_PP-binding	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_ACP-like,HMMPfam_PP-binding,superfamily_Quinoprotein alcohol dehydrogenase-like,HMMSmart_SM00564,HMMPfam_PQQ	(deletion:cds_exon[57215429,57216224])	no_errors
ABCA13	154664	genome.wustl.edu	37	7	48494768	48494768	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48494768	48494768	G	T	SNP	ABCA13	NM_152701	human	genbank	57_37b	+1	reviewed	missense	c.12700	p.V4234F	0.708	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
ARHGEF1	9138	genome.wustl.edu	37	19	42410160	42410160	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42410160	42410160	C	T	SNP	ARHGEF1	NM_199002	human	genbank	57_37b	+1	reviewed	missense	c.2519	p.A840V	0.992	NULL	HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
C21orf99	149992	genome.wustl.edu	37	21	14424153	14424153	+	RNA	SNP	C	C	A	rs10439727	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	14424153	14424153	C	A	SNP	C21orf99	NR_026916	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.013	-	-	-	
CACNA1D	776	genome.wustl.edu	37	3	53765129	53765131	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53765129	53765131	AAC	-	DEL	CACNA1D	NM_000720	human	genbank	57_37b	+1	validated	in_frame_del	c.2422_2424	p.N809in_frame_del	1.000:1.000:1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	(deletion:cds_exon[53765104,53765173])	no_errors
CACNA2D2	9254	genome.wustl.edu	37	3	50413608	50413608	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50413608	50413608	G	A	SNP	CACNA2D2	NM_001005505	human	genbank	57_37b	-1	reviewed	silent	c.1638	p.N546	1.000	HMMPfam_Cache_1	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1,HMMPfam_VGCC_alpha2	-	no_errors
CEP290	80184	genome.wustl.edu	37	12	88474172	88474172	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	88474172	88474172	C	T	SNP	CEP290	NM_025114	human	genbank	57_37b	-1	reviewed	silent	c.5013	p.Q1671	1.000	NULL	NULL	-	no_errors
CLEC18B	0	genome.wustl.edu	37	16	74451961	74451961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74451961	74451961	G	A	SNP	CLEC18B	NM_001011880	human	genbank	57_37b	-1	validated	missense	c.452	p.T151M	0.991	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
CSMD3	114788	genome.wustl.edu	37	8	113841931	113841931	+	Silent	SNP	T	T	G	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	113841931	113841931	T	G	SNP	CSMD3	NM_198123	human	genbank	57_37b	-1	validated	silent	c.1843	p.R615	0.991	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10	-	no_errors
ENSG00000207433	0	genome.wustl.edu	37	9	15544214	15544214	+	RNA	SNP	G	A	A	rs10116904	byCluster;by1000genomes	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	15544214	15544214	G	A	SNP	ENSG00000207433	ENST00000384702	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	
FBXO18	84893	genome.wustl.edu	37	10	5937117	5937117	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5937117	5937117	G	T	SNP	FBXO18	NM_032807	human	genbank	57_37b	+1	reviewed	missense	c.121	p.A41S	0.000	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52540	-	no_errors
FCGR1C	2211	genome.wustl.edu	37	1	149375146	149375146	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149375146	149375146	C	A	SNP	FCGR1C	ENST00000440993	human	ensembl	57_37b	+1	known	missense	c.456	p.N152K	0.012	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
KCNQ2	3785	genome.wustl.edu	37	20	62038263	62038263	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62038263	62038263	C	T	SNP	KCNQ2	NM_172107	human	genbank	57_37b	-1	reviewed	missense	c.2353	p.D785N	1.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
MED16	10025	genome.wustl.edu	37	19	871135	871135	+	Missense_Mutation	SNP	A	A	G	rs1683569	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	871135	871135	A	G	SNP	MED16	ENST00000269814	human	ensembl	57_37b	-1	known	missense	c.2024	p.L675S	1.000	NULL	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	-	
MLLT4	4301	genome.wustl.edu	37	6	168312077	168312077	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168312077	168312077	C	T	SNP	MLLT4	NM_001040001	human	genbank	57_37b	+1	validated	nonsense	c.1942	p.Q648*	1.000	NULL	HMMPfam_RA,HMMSmart_RA,superfamily_SSF54236,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_DIL,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
NTSR1	4923	genome.wustl.edu	37	20	61340826	61340826	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61340826	61340826	G	A	SNP	NTSR1	NM_002531	human	genbank	57_37b	+1	reviewed	silent	c.267	p.A89	0.987	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
SH2D2A	9047	genome.wustl.edu	37	1	156784870	156784870	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156784870	156784870	G	A	SNP	SH2D2A	NM_003975	human	genbank	57_37b	-1	validated	silent	c.267	p.H89	0.417	superfamily_SH2 domain	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
TLR10	81793	genome.wustl.edu	37	4	38777170	38777172	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	38777170	38777172	AAC	-	DEL	TLR10	NM_001017388	human	genbank	57_37b	-1	reviewed	in_frame_del	c.42_40	p.V14in_frame_del	0.000:0.000:0.000	NULL	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	(deletion:cds_exon[38774776,38777211])	no_errors
USH2A	7399	genome.wustl.edu	37	1	215820992	215820992	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215820992	215820992	G	A	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.14663	p.T4888M	0.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
USP9X	8239	genome.wustl.edu	37	X	41025364	41025364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41025364	41025364	G	A	SNP	USP9X	NM_001039590	human	genbank	57_37b	+1	reviewed	missense	c.2225	p.R742Q	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
WFIKKN1	117166	genome.wustl.edu	37	16	683760	683760	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	683760	683760	C	T	SNP	WFIKKN1	NM_053284	human	genbank	57_37b	+1	reviewed	silent	c.1350	p.A450	0.000	superfamily_TIMP_like	PatternScan_KAZAL,superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_TIMP_like	-	no_errors
