Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
A2ML1	144568	genome.wustl.edu	37	12	8998791	8998791	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8998791	8998791	C	T	SNP	A2ML1	NM_144670	human	genbank	57_37b	+1	validated	silent	c.1656	p.F552	0.669	HMMPfam_A2M_N_2	HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
ABCA7	10347	genome.wustl.edu	37	19	1063775	1063775	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1063775	1063775	G	T	SNP	ABCA7	NM_019112	human	genbank	57_37b	+1	reviewed	missense	c.5864	p.G1955V	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ALG11	440138	genome.wustl.edu	37	13	52598472	52598472	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52598472	52598472	C	G	SNP	ALG11	NM_001004127	human	genbank	57_37b	+1	provisional	missense	c.606	p.I202M	1.000	superfamily_SSF53756	superfamily_SSF53756,HMMPfam_Glycos_transf_1	-	no_errors
APBB2	323	genome.wustl.edu	37	4	41015638	41015638	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	41015638	41015638	G	A	SNP	APBB2	NM_173075	human	genbank	57_37b	-1	reviewed	missense	c.797	p.S266F	1.000	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors
APTX	54840	genome.wustl.edu	37	9	32987552	32987552	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32987552	32987552	G	C	SNP	APTX	NM_175073	human	genbank	57_37b	-1	reviewed	missense	c.473	p.P158R	0.006	NULL	superfamily_SMAD/FHA domain,superfamily_HIT-like,HMMPfam_HIT,PatternScan_HIT_1,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ATXN2L	11273	genome.wustl.edu	37	16	28845927	28845927	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28845927	28845927	G	C	SNP	ATXN2L	NM_148414	human	genbank	57_37b	+1	reviewed	silent	c.2346	p.T782	0.674	NULL	HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors
C12orf36	283422	genome.wustl.edu	37	12	13526168	13526168	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	13526168	13526168	T	G	SNP	C12orf36	NM_182558	human	genbank	57_37b	-1	provisional	missense	c.387	p.Q129H	0.000	NULL	NULL	-	no_errors
C9orf100	84904	genome.wustl.edu	37	9	35664117	35664117	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35664117	35664117	G	A	SNP	C9orf100	NM_032818	human	genbank	57_37b	-1	provisional	silent	c.361	p.L121	1.000	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
CADPS2	93664	genome.wustl.edu	37	7	122153323	122153323	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	122153323	122153323	G	A	SNP	CADPS2	NM_017954	human	genbank	57_37b	-1	reviewed	missense	c.1522	p.R508C	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMPfam_C2,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041	-	no_errors
CBLB	868	genome.wustl.edu	37	3	105421211	105421211	+	Silent	SNP	A	A	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	105421211	105421211	A	T	SNP	CBLB	NM_170662	human	genbank	57_37b	-1	validated	silent	c.1686	p.P562	1.000	NULL	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
CCDC103	388389	genome.wustl.edu	37	17	42978466	42978466	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42978466	42978466	T	A	SNP	CCDC103	NM_213607	human	genbank	57_37b	+1	provisional	missense	c.100	p.L34I	0.993	NULL	NULL	-	no_errors
CDH23	64072	genome.wustl.edu	37	10	73553149	73553149	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	73553149	73553149	C	T	SNP	CDH23	NM_022124	human	genbank	57_37b	+1	reviewed	missense	c.6464	p.S2155L	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
CHEK2	11200	genome.wustl.edu	37	22	29115457	29115457	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29115457	29115457	A	C	SNP	CHEK2	NM_001005735	human	genbank	57_37b	-1	reviewed	missense	c.738	p.D246E	1.000	superfamily_SMAD/FHA domain,superfamily_Protein kinase-like (PK-like)	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
COL20A1	57642	genome.wustl.edu	37	20	61942976	61942976	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	61942976	61942976	G	A	SNP	COL20A1	NM_020882	human	genbank	57_37b	+1	validated	splice_site	c.1540-1	e12-1	0.999	-	-	-	no_errors
CUL9	23113	genome.wustl.edu	37	6	43191035	43191035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	43191035	43191035	C	T	SNP	CUL9	NM_015089	human	genbank	57_37b	+1	validated	missense	c.7184	p.S2395F	0.999	NULL	"superfamily_ARM repeat,superfamily_Galactose-binding domain-like,HMMPfam_APC10,PatternScan_CYTOCHROME_P450,HMMPfam_Cullin,superfamily_Cullin homology domain,superfamily_""Winged helix"" DNA-binding domain,PatternScan_CULLIN_1,superfamily_RING/U-box,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors
DENND1A	57706	genome.wustl.edu	37	9	126520095	126520095	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	126520095	126520095	T	A	SNP	DENND1A	NM_020946	human	genbank	57_37b	-1	validated	silent	c.189	p.T63	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
DHX16	8449	genome.wustl.edu	37	6	30623036	30623036	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	30623036	30623036	A	G	SNP	DHX16	NM_003587	human	genbank	57_37b	-1	reviewed	silent	c.2739	p.D913	0.998	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
DMC1	11144	genome.wustl.edu	37	22	38962600	38962611	+	In_Frame_Del	DEL	GTTTGTTCGCTG	GTTTGTTCGCTG	-	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	GTTTGTTCGCTG	GTTTGTTCGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38962600	38962611	GTTTGTTCGCTG	-	DEL	DMC1	NM_007068	human	genbank	57_37b	-1	reviewed	in_frame_del	c.238_227	p.AANKL76in_frame_delV	0.999:0.998:1.000:1.000:1.000:1.000:1.000:0.986:1.000:1.000:0.406:1.000	superfamily_Rad51_N,HMMPfam_HHH	superfamily_Rad51_N,HMMPfam_HHH,HMMPfam_Rad51,superfamily_SSF52540,HMMSmart_AAA	(deletion:cds_exon[38962595,38962741])	no_errors
DNAH11	8701	genome.wustl.edu	37	7	21639693	21639693	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	21639693	21639693	C	G	SNP	DNAH11	NM_003777	human	genbank	57_37b	+1	reviewed	missense	c.2956	p.Q986E	0.991	NULL	HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,PatternScan_THIOL_PROTEASE_HIS,HMMPfam_AAA_5,PatternScan_WD_REPEATS_1,HMMPfam_Dynein_heavy	-	no_errors
DNHD1	144132	genome.wustl.edu	37	11	6592506	6592506	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6592506	6592506	C	T	SNP	DNHD1	NM_144666	human	genbank	57_37b	+1	provisional	silent	c.13764	p.H4588	0.986	HMMPfam_Dynein_heavy	HMMPfam_DHC_N2,superfamily_Ferritin-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dynein_heavy	-	no_errors
DPRX	503834	genome.wustl.edu	37	19	54139920	54139920	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54139920	54139920	C	-	DEL	DPRX	NM_001012728	human	genbank	57_37b	+1	validated	frame_shift_del	c.254	p.T85fs	0.000	NULL	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	(deletion:cds_exon[54139850,54140242])	no_errors
DPRX	503834	genome.wustl.edu	37	19	54139922	54139943	+	Frame_Shift_Del	DEL	CCACAACCGCCAATACCAGAGG	CCACAACCGCCAATACCAGAGG	-	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	CCACAACCGCCAATACCAGAGG	CCACAACCGCCAATACCAGAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54139922	54139943	CCACAACCGCCAATACCAGAGG	-	DEL	DPRX	NM_001012728	human	genbank	57_37b	+1	validated	frame_shift_del	c.256_277	p.P86fs	0.001:0.000:0.000:0.001:0.001:0.000:0.001:0.001:0.002:0.003:0.001:0.000:0.000:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.005:0.005	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	(deletion:cds_exon[54139850,54140242])	no_errors
EPHA2	1969	genome.wustl.edu	37	1	16475071	16475071	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16475071	16475071	C	T	SNP	EPHA2	NM_004431	human	genbank	57_37b	-1	reviewed	missense	c.625	p.A209T	1.000	superfamily_Grow_fac_recept	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Grow_fac_recept,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
EPN3	55040	genome.wustl.edu	37	17	48619449	48619450	+	Frame_Shift_Ins	INS	-	-	GC	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48619449	48619450	-	GC	INS	EPN3	NM_017957	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1830_1831	p.L610fs	1.000:1.000	NULL	HMMPfam_ENTH,HMMPfam_UIM,HMMSmart_SM00726,superfamily_ENTH/VHS domain,HMMSmart_SM00273	-	no_errors
EPS8L1	54869	genome.wustl.edu	37	19	55594928	55594928	+	Missense_Mutation	SNP	G	G	C	rs62619976	byCluster	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55594928	55594928	G	C	SNP	EPS8L1	ENST00000310075	human	ensembl	57_37b	+1	known	missense	c.1343	p.R448P	0.000	NULL	HMMPfam_PTB	-	
FAH	2184	genome.wustl.edu	37	15	80454634	80454634	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	80454634	80454634	C	G	SNP	FAH	NM_000137	human	genbank	57_37b	+1	reviewed	silent	c.411	p.V137	0.032	superfamily_FAH,HMMPfam_FAA_hydrolase	superfamily_Fumarylacetoacetate hydrolase FAH N-terminal domain,HMMPfam_DUF1969,superfamily_FAH,HMMPfam_FAA_hydrolase	-	no_errors
FAM75C1	441452	genome.wustl.edu	37	9	90536977	90536977	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	90536977	90536977	G	T	SNP	FAM75C1	NM_001145124	human	genbank	57_37b	+1	validated	missense	c.2155	p.A719S	0.002	NULL	NULL	-	no_errors
FHL5	9457	genome.wustl.edu	37	6	97051596	97051596	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	97051596	97051596	T	C	SNP	FHL5	NM_020482	human	genbank	57_37b	+1	reviewed	missense	c.107	p.V36A	0.777	superfamily_SSF57716	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
GNAI2	2771	genome.wustl.edu	37	3	50273779	50273779	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50273779	50273779	C	A	SNP	GNAI2	NM_002070	human	genbank	57_37b	+1	reviewed	silent	c.12	p.T4	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors
HIVEP3	59269	genome.wustl.edu	37	1	41978910	41978910	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41978910	41978910	G	C	SNP	HIVEP3	NM_024503	human	genbank	57_37b	-1	validated	silent	c.5982	p.P1994	1.000	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
HSD17B4	3295	genome.wustl.edu	37	5	118862855	118862855	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	118862855	118862855	G	A	SNP	HSD17B4	NM_000414	human	genbank	57_37b	+1	reviewed	missense	c.1708	p.G570R	1.000	HMMPfam_MaoC_dehydratas,superfamily_SSF54637	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_SSF54637,HMMPfam_MaoC_dehydratas,superfamily_SCP2,HMMPfam_SCP2	-	no_errors
INTS1	26173	genome.wustl.edu	37	7	1525118	1525118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1525118	1525118	C	T	SNP	INTS1	ENST00000389470	human	ensembl	57_37b	-1	known	silent	c.3465	p.E1155	0.000	NULL	PatternScan_ACTININ_1	-	no_errors
KIF25	3834	genome.wustl.edu	37	6	168439275	168439275	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168439275	168439275	C	G	SNP	KIF25	NM_030615	human	genbank	57_37b	+1	reviewed	silent	c.360	p.V120	0.444	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KLHL13	90293	genome.wustl.edu	37	X	117033310	117033310	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	117033310	117033310	G	C	SNP	KLHL13	NM_033495	human	genbank	57_37b	-1	validated	missense	c.1529	p.P510R	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMSmart_SM00612,HMMPfam_Kelch_1	-	no_errors
KLHL23	151230	genome.wustl.edu	37	2	170592167	170592167	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170592167	170592167	C	G	SNP	KLHL23	NM_144711	human	genbank	57_37b	+1	validated	missense	c.643	p.R215G	1.000	HMMPfam_BACK	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	-	no_errors
LOC285735	285735	genome.wustl.edu	37	6	133421215	133421215	+	RNA	SNP	A	A	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	133421215	133421215	A	T	SNP	LOC285735	NR_026969	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
LOC440031	440031	genome.wustl.edu	37	11	15096095	15096096	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	15096095	15096096	TG	-	DEL	LOC440031	XR_017508	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000:0.000	-	-	(deletion:rna[15092872,15096190])	no_errors
LRRC4B	94030	genome.wustl.edu	37	19	51021954	51021954	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51021954	51021954	C	A	SNP	LRRC4B	NM_001080457	human	genbank	57_37b	-1	provisional	missense	c.1016	p.R339L	1.000	superfamily_SSF52058,HMMSmart_LRRCT	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
LRRIQ3	127255	genome.wustl.edu	37	1	74507371	74507371	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	74507371	74507371	A	C	SNP	LRRIQ3	NM_001105659	human	genbank	57_37b	-1	provisional	missense	c.1244	p.M415R	0.410	NULL	superfamily_Outer arm dynein light chain 1,HMMPfam_LRR_1	-	no_errors
LYNX1	66004	genome.wustl.edu	37	8	143856615	143856615	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	143856615	143856615	G	A	SNP	LYNX1	NM_177457	human	genbank	57_37b	-1	reviewed	silent	c.321	p.I107	0.000	NULL	superfamily_SSF57302,HMMSmart_LU,HMMPfam_UPAR_LY6	-	no_errors
MGA	23269	genome.wustl.edu	37	15	42058547	42058547	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42058547	42058547	A	G	SNP	MGA	NM_001080541	human	genbank	57_37b	+1	validated	missense	c.8414	p.Y2805C	0.218	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	-	no_errors
MME	4311	genome.wustl.edu	37	3	154889935	154889935	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	154889935	154889935	C	T	SNP	MME	NM_000902	human	genbank	57_37b	+1	reviewed	silent	c.2010	p.G670	0.008	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE"	-	no_errors
MTA3	57504	genome.wustl.edu	37	2	42931438	42931438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	42931438	42931438	G	A	SNP	MTA3	NM_020744	human	genbank	57_37b	+1	provisional	missense	c.1130	p.R377K	0.995	HMMSmart_ZnF_GATA	HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_Homeodomain_like,HMMSmart_ZnF_GATA,HMMPfam_GATA	-	no_errors
N4BP2L2	10443	genome.wustl.edu	37	13	33109915	33109915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33109915	33109915	G	A	SNP	N4BP2L2	NM_014887	human	genbank	57_37b	-1	validated	missense	c.1250	p.T417I	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NEK5	341676	genome.wustl.edu	37	13	52701581	52701581	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52701581	52701581	C	A	SNP	NEK5	NM_199289	human	genbank	57_37b	-1	provisional	missense	c.38	p.G13V	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NLRC5	84166	genome.wustl.edu	37	16	57092939	57092940	+	Frame_Shift_Ins	INS	-	-	TGTA	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57092939	57092940	-	TGTA	INS	NLRC5	NM_032206	human	genbank	57_37b	+1	validated	frame_shift_ins	c.3886_3887	p.P1296fs	0.779:0.769	superfamily_RNI-like,HMMSmart_SM00368	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors
NLRC5	84166	genome.wustl.edu	37	16	57092943	57092943	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	57092943	57092943	C	G	SNP	NLRC5	NM_032206	human	genbank	57_37b	+1	validated	missense	c.3890	p.S1297C	0.383	superfamily_RNI-like,HMMSmart_SM00368	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00367,HMMSmart_SM00368,HMMPfam_LRR_1	-	no_errors
PCYT2	5833	genome.wustl.edu	37	17	79864664	79864664	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79864664	79864664	G	C	SNP	PCYT2	NM_002861	human	genbank	57_37b	-1	provisional	missense	c.648	p.I216M	1.000	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase,HMMPfam_CTP_transf_2	-	no_errors
PIWIL2	55124	genome.wustl.edu	37	8	22172647	22172647	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22172647	22172647	G	A	SNP	PIWIL2	NM_001135721	human	genbank	57_37b	+1	validated	missense	c.2197	p.D733N	0.997	superfamily_Ribonuclease H-like,HMMPfam_Piwi	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
PNMAL1	55228	genome.wustl.edu	37	19	46973872	46973872	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46973872	46973872	G	A	SNP	PNMAL1	NM_018215	human	genbank	57_37b	-1	validated	nonsense	c.421	p.Q141*	0.008	NULL	NULL	-	no_errors
POGZ	23126	genome.wustl.edu	37	1	151403234	151403234	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151403234	151403234	G	C	SNP	POGZ	NM_015100	human	genbank	57_37b	-1	reviewed	missense	c.367	p.Q123E	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMPfam_CenpB-DNA-bind,superfamily_Homeodomain-like,HMMSmart_SM00674,HMMPfam_DDE	-	no_errors
PPFIA4	8497	genome.wustl.edu	37	1	203040821	203040821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203040821	203040821	C	T	SNP	PPFIA4	NM_015053	human	genbank	57_37b	+1	validated	missense	c.1808	p.A603V	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors
PRIC285	85441	genome.wustl.edu	37	20	62197238	62197238	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62197238	62197238	C	T	SNP	PRIC285	NM_001037335	human	genbank	57_37b	-1	reviewed	silent	c.2937	p.E979	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_RNB,PatternScan_RIBONUCLEASE_II	-	no_errors
PTCRA	171558	genome.wustl.edu	37	6	42891993	42891993	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42891993	42891993	C	T	SNP	PTCRA	NM_138296	human	genbank	57_37b	+1	validated	missense	c.406	p.P136S	0.015	NULL	superfamily_Immunoglobulin	-	no_errors
PTPRR	5801	genome.wustl.edu	37	12	71054738	71054738	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	71054738	71054738	G	T	SNP	PTPRR	NM_002849	human	genbank	57_37b	-1	reviewed	missense	c.1748	p.P583H	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PZP	5858	genome.wustl.edu	37	12	9312950	9312950	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9312950	9312950	C	T	SNP	PZP	NM_002864	human	genbank	57_37b	-1	validated	silent	c.3009	p.T1003	0.000	superfamily_Terpenoid cyclases/Protein prenyltransferases	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
RHO	6010	genome.wustl.edu	37	3	129251508	129251523	+	Frame_Shift_Del	DEL	ACCCACCAGGGCTCCA	ACCCACCAGGGCTCCA	-	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	ACCCACCAGGGCTCCA	ACCCACCAGGGCTCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	129251508	129251523	ACCCACCAGGGCTCCA	-	DEL	RHO	NM_000539	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.829_844	p.H278fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:0.999:0.986:0.370:0.385	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_Rhodopsin_N,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_OPSIN	(deletion:cds_exon[129251376,129251615])	no_errors
RNU6-42	0	genome.wustl.edu	37	3	196511870	196511870	+	RNA	SNP	C	C	T	rs10440165	byCluster	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196511870	196511870	C	T	SNP	RNU6-42	ENST00000384165	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	
SCN3A	6328	genome.wustl.edu	37	2	166020192	166020192	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	166020192	166020192	G	T	SNP	SCN3A	NM_006922	human	genbank	57_37b	-1	reviewed	silent	c.630	p.G210	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ	-	no_errors
SEMA5A	9037	genome.wustl.edu	37	5	9202316	9202316	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	9202316	9202316	A	C	SNP	SEMA5A	NM_003966	human	genbank	57_37b	-1	reviewed	missense	c.683	p.F228C	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	-	no_errors
SIGLEC16	0	genome.wustl.edu	37	19	50474928	50474928	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50474928	50474928	T	G	SNP	SIGLEC16	ENST00000417280	human	ensembl	57_37b	+1	known	silent	c.1062	p.P354	0.253	superfamily_Immunoglobulin	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMPfam_C2-set_2,HMMSmart_SM00408,HMMPfam_ig,PatternScan_IG_MHC	-	no_errors
SLC17A3	10786	genome.wustl.edu	37	6	25862627	25862627	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25862627	25862627	T	C	SNP	SLC17A3	NM_001098486	human	genbank	57_37b	-1	validated	missense	c.137	p.H46R	0.014	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
SLCO1B3	28234	genome.wustl.edu	37	12	21036408	21036408	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	21036408	21036408	A	G	SNP	SLCO1B3	NM_019844	human	genbank	57_37b	+1	validated	silent	c.1554	p.S518	0.031	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP	superfamily_MFS_gen_substrate_transporter,HMMPfam_OATP,superfamily_SSF100895,HMMSmart_KAZAL,HMMPfam_Kazal_2	-	no_errors
SPG11	80208	genome.wustl.edu	37	15	44905735	44905735	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44905735	44905735	C	A	SNP	SPG11	NM_025137	human	genbank	57_37b	-1	reviewed	splice_site	c.3039-1	e17-1	1.000	-	-	-	no_errors
TCTE1	202500	genome.wustl.edu	37	6	44253808	44253808	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44253808	44253808	A	T	SNP	TCTE1	NM_182539	human	genbank	57_37b	-1	validated	missense	c.739	p.Y247N	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
TMEM106B	54664	genome.wustl.edu	37	7	12258129	12258129	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	12258129	12258129	G	C	SNP	TMEM106B	NM_001134232	human	genbank	57_37b	+1	validated	missense	c.263	p.R88T	1.000	HMMPfam_DUF1356	HMMPfam_DUF1356	-	no_errors
TMPPE	0	genome.wustl.edu	37	3	33135493	33135493	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33135493	33135493	G	A	SNP	TMPPE	NM_001039770	human	genbank	57_37b	-1	validated	silent	c.195	p.R65	0.065	NULL	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577538	7577538	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577538	7577538	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.743	p.R248Q	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	
TRAF7	84231	genome.wustl.edu	37	16	2222552	2222552	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2222552	2222552	C	A	SNP	TRAF7	NM_032271	human	genbank	57_37b	+1	validated	missense	c.746	p.A249D	1.000	HMMPfam_zf-TRAF,superfamily_TRAF domain-like	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_TRAF domain-like,HMMPfam_zf-TRAF,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
VPS13A	23230	genome.wustl.edu	37	9	79955388	79955388	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79955388	79955388	G	C	SNP	VPS13A	NM_033305	human	genbank	57_37b	+1	reviewed	missense	c.6948	p.M2316I	1.000	HMMPfam_DUF1162	HMMPfam_DUF1162	-	no_errors
WDR76	79968	genome.wustl.edu	37	15	44134845	44134845	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44134845	44134845	A	C	SNP	WDR76	NM_024908	human	genbank	57_37b	+1	validated	missense	c.854	p.E285A	0.013	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZEB2	9839	genome.wustl.edu	37	2	145157550	145157550	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	145157550	145157550	C	G	SNP	ZEB2	NM_014795	human	genbank	57_37b	-1	reviewed	missense	c.1204	p.V402L	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX	-	no_errors
ZNF578	147660	genome.wustl.edu	37	19	53014843	53014843	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53014843	53014843	A	C	SNP	ZNF578	NM_001099694	human	genbank	57_37b	+1	validated	missense	c.1209	p.E403D	0.049	superfamily_Multiheme cytochromes,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Multiheme cytochromes	-	no_errors
ZNF670	93474	genome.wustl.edu	37	1	247201519	247201519	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247201519	247201519	C	G	SNP	ZNF670	NM_033213	human	genbank	57_37b	-1	validated	missense	c.402	p.E134D	0.984	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
ZNF8	7554	genome.wustl.edu	37	19	58790466	58790466	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0AV-01A-31D-A10Y-09	TCGA-BH-A0AV-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58790466	58790466	G	A	SNP	ZNF8	NM_021089	human	genbank	57_37b	+1	validated	missense	c.19	p.G7R	0.010	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
