Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTS14	140766	genome.wustl.edu	37	10	72513635	72513635	+	Missense_Mutation	SNP	C	C	A	rs12774070	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72513635	72513635	C	A	SNP	ADAMTS14	NM_139155	human	genbank	57_37b	+1	reviewed	missense	c.2818	p.L940M	1.000	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1	-	
AIRE	326	genome.wustl.edu	37	21	45712977	45712977	+	Silent	SNP	T	T	C	rs1800521	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45712977	45712977	T	C	SNP	AIRE	NM_000383	human	genbank	57_37b	+1	reviewed	silent	c.1197	p.A399	0.000	NULL	HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	
ALOXE3	59344	genome.wustl.edu	37	17	8000125	8000125	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8000125	8000125	C	G	SNP	ALOXE3	NM_021628	human	genbank	57_37b	-1	reviewed	splice_site	c.1957-1	e15-1	1.000	-	-	-	no_errors
ANO2	57101	genome.wustl.edu	37	12	5936967	5936967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5936967	5936967	C	T	SNP	ANO2	NM_020373	human	genbank	57_37b	-1	validated	missense	c.848	p.R283H	1.000	NULL	HMMPfam_DUF590	-	no_errors
APEX2	27301	genome.wustl.edu	37	X	55033173	55033173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	55033173	55033173	G	A	SNP	APEX2	NM_014481	human	genbank	57_37b	+1	reviewed	missense	c.862	p.D288N	0.048	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos	PatternScan_AP_NUCLEASE_F1_2,PatternScan_AP_NUCLEASE_F1_3,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,PatternScan_AP_NUCLEASE_F1_1,HMMPfam_zf-GRF	-	no_errors
AQPEP	0	genome.wustl.edu	37	5	115298518	115298518	+	Silent	SNP	A	A	G	rs12522632	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	115298518	115298518	A	G	SNP	AQPEP	NM_173800	human	genbank	57_37b	+1	validated	silent	c.204	p.P68	0.000	NULL	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	
ATRX	546	genome.wustl.edu	37	X	76890106	76890106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76890106	76890106	C	T	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	missense	c.4788	p.M1596I	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N	superfamily_FYVE/PHD zinc finger,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
ATRX	546	genome.wustl.edu	37	X	76940061	76940061	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	76940061	76940061	C	T	SNP	ATRX	NM_000489	human	genbank	57_37b	-1	reviewed	silent	c.687	p.L229	1.000	superfamily_FYVE/PHD zinc finger	HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BBS10	79738	genome.wustl.edu	37	12	76740150	76740150	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76740150	76740150	G	A	SNP	BBS10	NM_024685	human	genbank	57_37b	-1	reviewed	missense	c.1615	p.P539S	0.001	superfamily_GroEL-ATPase	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	-	no_errors
BTK	695	genome.wustl.edu	37	X	100614283	100614283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100614283	100614283	C	T	SNP	BTK	NM_000061	human	genbank	57_37b	-1	reviewed	missense	c.892	p.E298K	1.000	superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_BTK,HMMPfam_BTK,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
C12orf42	374470	genome.wustl.edu	37	12	103695971	103695971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	103695971	103695971	G	A	SNP	C12orf42	NM_001099336	human	genbank	57_37b	-1	validated	missense	c.998	p.S333L	0.000	NULL	NULL	-	no_errors
C14orf102	55051	genome.wustl.edu	37	14	90756755	90756755	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	90756755	90756755	A	T	SNP	C14orf102	NM_017970	human	genbank	57_37b	-1	validated	missense	c.2039	p.F680Y	0.002	superfamily_Prenyl_trans	superfamily_Prenyl_trans,HMMPfam_DUF1740	-	no_errors
C5	727	genome.wustl.edu	37	9	123722615	123722615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123722615	123722615	G	A	SNP	C5	NM_001735	human	genbank	57_37b	-1	reviewed	missense	c.4589	p.A1530V	1.000	NULL	PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors
C9orf43	257169	genome.wustl.edu	37	9	116175869	116175869	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116175869	116175869	G	C	SNP	C9orf43	NM_152786	human	genbank	57_37b	+1	predicted	missense	c.96	p.E32D	0.972	NULL	NULL	-	no_errors
CBLB	868	genome.wustl.edu	37	3	105439088	105439088	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	105439088	105439088	C	T	SNP	CBLB	NM_170662	human	genbank	57_37b	-1	validated	missense	c.1210	p.D404N	1.000	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
CDKN1B	1027	genome.wustl.edu	37	12	12870853	12870853	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12870853	12870853	C	A	SNP	CDKN1B	NM_004064	human	genbank	57_37b	+1	reviewed	nonsense	c.80	p.S27*	1.000	NULL	HMMPfam_CDI	-	no_errors
CEMP1	752014	genome.wustl.edu	37	16	2580833	2580833	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2580833	2580833	C	G	SNP	CEMP1	NM_001048212	human	genbank	57_37b	-1	validated	missense	c.242	p.R81P	0.000	NULL	NULL	-	no_errors
CHPT1	56994	genome.wustl.edu	37	12	102117533	102117533	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102117533	102117533	C	T	SNP	CHPT1	NM_020244	human	genbank	57_37b	+1	validated	nonsense	c.973	p.Q325*	1.000	NULL	HMMPfam_CDP-OH_P_transf,PatternScan_CDP_ALCOHOL_P_TRANSF,PatternScan_LIPOYL	-	no_errors
CNTN6	27255	genome.wustl.edu	37	3	1424982	1424982	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	1424982	1424982	C	T	SNP	CNTN6	NM_014461	human	genbank	57_37b	+1	reviewed	nonsense	c.2407	p.Q803*	0.994	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
CWH43	80157	genome.wustl.edu	37	4	49030718	49030718	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	49030718	49030718	C	G	SNP	CWH43	NM_025087	human	genbank	57_37b	+1	validated	missense	c.1339	p.L447V	0.939	NULL	NULL	-	no_errors
CYP4F11	57834	genome.wustl.edu	37	19	16034795	16034795	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16034795	16034795	G	C	SNP	CYP4F11	NM_001128932	human	genbank	57_37b	-1	reviewed	missense	c.745	p.L249V	0.820	superfamily_Cytochrome P450,HMMPfam_p450	superfamily_Cytochrome P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
DNAJC9	23234	genome.wustl.edu	37	10	75003169	75003169	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75003169	75003169	C	G	SNP	DNAJC9	NM_015190	human	genbank	57_37b	-1	provisional	missense	c.772	p.E258Q	1.000	NULL	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors
EGFR	1956	genome.wustl.edu	37	7	55223635	55223635	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	55223635	55223635	C	A	SNP	EGFR	NM_005228	human	genbank	57_37b	+1	reviewed	silent	c.1002	p.R334	0.993	HMMPfam_Furin-like,superfamily_L domain-like	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
ENSG00000197309	0	genome.wustl.edu	37	11	124056377	124056377	+	Missense_Mutation	SNP	T	T	C	rs2512228	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124056377	124056377	T	C	SNP	ENSG00000197309	ENST00000318666	human	ensembl	57_37b	+1	known	missense	c.401	p.V134A	0.009	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	
FJX1	24147	genome.wustl.edu	37	11	35641312	35641312	+	Silent	SNP	G	G	A	rs3740799	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	35641312	35641312	G	A	SNP	FJX1	NM_014344	human	genbank	57_37b	+1	reviewed	silent	c.1128	p.L376	1.000	NULL	NULL	-	
FRMPD4	9758	genome.wustl.edu	37	X	12734858	12734858	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	12734858	12734858	C	T	SNP	FRMPD4	NM_014728	human	genbank	57_37b	+1	reviewed	silent	c.2280	p.L760	0.972	NULL	PatternScan_WW_DOMAIN_1,PatternScan_FERM_1,PatternScan_FERM_2,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
GPR110	266977	genome.wustl.edu	37	6	46977528	46977528	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	46977528	46977528	C	A	SNP	GPR110	NM_153840	human	genbank	57_37b	-1	validated	missense	c.1643	p.G548V	1.000	HMMPfam_GPS,HMMSmart_SM00303	superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
GRK1	6011	genome.wustl.edu	37	13	114324090	114324093	+	Frame_Shift_Del	DEL	TCTG	TCTG	-	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	TCTG	TCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	114324090	114324093	TCTG	-	DEL	GRK1	ENST00000335678	human	ensembl	57_37b	+1	known	frame_shift_del	c.788_791	p.C264fs	1.000:1.000:1.000:1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Regulat_G_prot_signal_superfam,HMMPfam_RGS,HMMSmart_RGS,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	(deletion:cds_exon[114324002,114324129])	no_errors
IQUB	154865	genome.wustl.edu	37	7	123152129	123152129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	123152129	123152129	G	A	SNP	IQUB	NM_178827	human	genbank	57_37b	-1	validated	missense	c.266	p.S89L	0.000	NULL	HMMPfam_DUF2021,superfamily_Ubiquitin-like	-	no_errors
JMJD7-PLA2G4B	8681	genome.wustl.edu	37	15	42132200	42132200	+	RNA	SNP	C	C	G	rs2077543	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42132200	42132200	C	G	SNP	JMJD7-PLA2G4B	NR_015346	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
KCNB2	9312	genome.wustl.edu	37	8	73849283	73849283	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	73849283	73849283	G	A	SNP	KCNB2	NM_004770	human	genbank	57_37b	+1	reviewed	missense	c.1693	p.E565K	0.597	HMMPfam_Kv2channel	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Kv2channel	-	no_errors
KIAA1210	57481	genome.wustl.edu	37	X	118223589	118223589	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118223589	118223589	C	G	SNP	KIAA1210	NM_020721	human	genbank	57_37b	-1	validated	missense	c.1604	p.R535T	0.000	NULL	NULL	-	no_errors
KIF12	113220	genome.wustl.edu	37	9	116854879	116854879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116854879	116854879	C	T	SNP	KIF12	NM_138424	human	genbank	57_37b	-1	provisional	missense	c.1226	p.R409Q	0.071	NULL	HMMPfam_Kinesin,superfamily_SSF52540,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
LCA5L	150082	genome.wustl.edu	37	21	40783710	40783710	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	40783710	40783710	C	G	SNP	LCA5L	NM_152505	human	genbank	57_37b	-1	validated	missense	c.994	p.E332Q	0.986	NULL	NULL	-	no_errors
LOC442132	442132	genome.wustl.edu	37	5	7303661	7303661	+	RNA	SNP	A	A	G	rs11134213	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7303661	7303661	A	G	SNP	LOC442132	XR_040018	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.004	-	-	-	
LYZL6	57151	genome.wustl.edu	37	17	34264771	34264771	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	34264771	34264771	C	G	SNP	LYZL6	NM_020426	human	genbank	57_37b	-1	provisional	missense	c.289	p.D97H	0.009	HMMPfam_Lys,superfamily_SSF53955,HMMSmart_LYZ1,PatternScan_LACTALBUMIN_LYSOZYME_1	HMMPfam_Lys,superfamily_SSF53955,HMMSmart_LYZ1,PatternScan_LACTALBUMIN_LYSOZYME_1	-	no_errors
MAGEB2	4113	genome.wustl.edu	37	X	30237091	30237091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	30237091	30237091	G	A	SNP	MAGEB2	NM_002364	human	genbank	57_37b	+1	reviewed	missense	c.394	p.V132I	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAPK1	5594	genome.wustl.edu	37	22	22162014	22162014	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	22162014	22162014	C	T	SNP	MAPK1	NM_002745	human	genbank	57_37b	-1	reviewed	missense	c.241	p.E81K	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_MAPK	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MRPL45	84311	genome.wustl.edu	37	17	36478038	36478038	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	36478038	36478038	G	A	SNP	MRPL45	NM_032351	human	genbank	57_37b	+1	reviewed	silent	c.690	p.R230	0.986	HMMPfam_Tim44	HMMPfam_Tim44	-	no_errors
MUC6	4588	genome.wustl.edu	37	11	1027811	1027811	+	Missense_Mutation	SNP	C	C	T	rs7481521	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1027811	1027811	C	T	SNP	MUC6	NM_005961	human	genbank	57_37b	-1	validated	missense	c.1855	p.V619M	0.860	HMMPfam_C8	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041	-	
MUS81	80198	genome.wustl.edu	37	11	65629461	65629461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65629461	65629461	C	T	SNP	MUS81	NM_025128	human	genbank	57_37b	+1	validated	missense	c.395	p.P132L	0.994	NULL	superfamily_DNApol_B_N_like,superfamily_Restrict_endonuc_II-like_core,HMMPfam_ERCC4,HMMSmart_HhH1	-	no_errors
NPIPL2	0	genome.wustl.edu	37	16	74411912	74411912	+	Missense_Mutation	SNP	G	G	A	rs62055194	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	74411912	74411912	G	A	SNP	NPIPL2	XM_002344099	human	genbank	57_37b	+1	model	missense	c.41	p.G14E	0.091	HMMPfam_NPIP	HMMPfam_NPIP	-	
NRBP2	340371	genome.wustl.edu	37	8	144918179	144918179	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144918179	144918179	C	A	SNP	NRBP2	NM_178564	human	genbank	57_37b	-1	provisional	nonsense	c.610	p.E204*	1.000	NULL	NULL	-	no_errors
OPLAH	26873	genome.wustl.edu	37	8	145114844	145114844	+	Missense_Mutation	SNP	C	C	T	rs7004867	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145114844	145114844	C	T	SNP	OPLAH	ENST00000426825	human	ensembl	57_37b	-1	known	missense	c.92	p.R31Q	1.000	HMMPfam_Hydant_A_N	HMMPfam_Hydant_A_N,HMMPfam_Hydantoinase_A,HMMPfam_Hydantoinase_B	-	
OR8J3	81168	genome.wustl.edu	37	11	55904866	55904866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55904866	55904866	G	A	SNP	OR8J3	NM_001004064	human	genbank	57_37b	-1	provisional	missense	c.329	p.S110L	0.001	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PAPPA	5069	genome.wustl.edu	37	9	119097272	119097272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	119097272	119097272	C	T	SNP	PAPPA	NM_002581	human	genbank	57_37b	+1	reviewed	missense	c.3530	p.A1177V	1.000	superfamily_SSF55486	superfamily_ConA_like_lec_gl,HMMSmart_LamGL,superfamily_SSF55486,HMMPfam_Notch,HMMSmart_NL,PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M43,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors
PCDHB1	29930	genome.wustl.edu	37	5	140431164	140431164	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140431164	140431164	G	C	SNP	PCDHB1	NM_013340	human	genbank	57_37b	+1	reviewed	missense	c.109	p.E37Q	1.000	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin	HMMSmart_CA,HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PF4	5196	genome.wustl.edu	37	4	74847580	74847580	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	74847580	74847580	C	T	SNP	PF4	NM_002619	human	genbank	57_37b	-1	validated	missense	c.91	p.A31T	0.380	HMMPfam_IL8	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CXC	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178916944	178916946	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178916944	178916946	AAG	-	DEL	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	in_frame_del	c.331_333	p.K111in_frame_del	1.000:1.000:1.000	superfamily_SSF54236	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	(deletion:cds_exon[178916614,178916965])	no_errors
PKD1	5310	genome.wustl.edu	37	16	2142083	2142083	+	Silent	SNP	C	G	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2142083	2142083	C	G	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	silent	c.11376	p.S3792	0.001	HMMPfam_PKD_channel	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
PLD5	200150	genome.wustl.edu	37	1	242277235	242277235	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	242277235	242277235	C	T	SNP	PLD5	NM_152666	human	genbank	57_37b	-1	provisional	missense	c.751	p.A251T	0.979	HMMPfam_PLD_envelope,superfamily_SSF56024	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors
PPP2R5E	5529	genome.wustl.edu	37	14	63842801	63842801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	63842801	63842801	C	T	SNP	PPP2R5E	NM_006246	human	genbank	57_37b	-1	reviewed	missense	c.1330	p.E444K	1.000	HMMPfam_B56,superfamily_ARM repeat	HMMPfam_B56,superfamily_ARM repeat	-	no_errors
PSMD1	5707	genome.wustl.edu	37	2	232035376	232035376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	232035376	232035376	G	A	SNP	PSMD1	NM_002807	human	genbank	57_37b	+1	reviewed	missense	c.2812	p.E938K	1.000	NULL	HMMPfam_PC_rep,superfamily_ARM repeat	-	no_errors
RARB	5915	genome.wustl.edu	37	3	25622090	25622090	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	25622090	25622090	C	T	SNP	RARB	NM_000965	human	genbank	57_37b	+1	reviewed	silent	c.663	p.F221	1.000	superfamily_Str_ncl_receptor	superfamily_SSF57716,HMMSmart_ZnF_C4,HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
RBMXL3	139804	genome.wustl.edu	37	X	114424076	114424076	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114424076	114424076	C	A	SNP	RBMXL3	NM_001145346	human	genbank	57_37b	+1	provisional	silent	c.72	p.L24	0.147	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	HMMSmart_RRM,superfamily_SSF54928,HMMPfam_RRM_1	-	no_errors
RELN	5649	genome.wustl.edu	37	7	103301856	103301856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103301856	103301856	C	T	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	missense	c.1408	p.G470S	0.971	NULL	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
RGS11	8786	genome.wustl.edu	37	16	324052	324052	+	Silent	SNP	A	A	G	rs2685126	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	324052	324052	A	G	SNP	RGS11	NM_183337	human	genbank	57_37b	-1	reviewed	silent	c.420	p.D140	0.199	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP,superfamily_Transducin (heterotrimeric G protein) gamma chain,HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315"	-	
RIF1	55183	genome.wustl.edu	37	2	152320040	152320040	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152320040	152320040	G	A	SNP	RIF1	NM_018151	human	genbank	57_37b	+1	validated	missense	c.4006	p.E1336K	0.934	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ROBLD3	28956	genome.wustl.edu	37	1	156024726	156024726	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156024726	156024726	A	G	SNP	ROBLD3	NM_014017	human	genbank	57_37b	+1	reviewed	missense	c.46	p.T16A	1.000	superfamily_Roadblock/LC7 domain,HMMPfam_Robl_LC7	superfamily_Roadblock/LC7 domain,HMMPfam_Robl_LC7	-	no_errors
SCRIB	23513	genome.wustl.edu	37	8	144886809	144886809	+	Missense_Mutation	SNP	C	C	T	rs11542374	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144886809	144886809	C	T	SNP	SCRIB	NM_182706	human	genbank	57_37b	-1	validated	missense	c.2938	p.G980R	0.005	superfamily_PDZ domain-like	superfamily_RNI-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	
SLC12A2	6558	genome.wustl.edu	37	5	127474341	127474341	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	127474341	127474341	C	G	SNP	SLC12A2	NM_001046	human	genbank	57_37b	+1	validated	missense	c.1461	p.F487L	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease_N,HMMPfam_AA_permease	-	no_errors
SNTG1	54212	genome.wustl.edu	37	8	51363125	51363125	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	51363125	51363125	C	T	SNP	SNTG1	NM_018967	human	genbank	57_37b	+1	reviewed	missense	c.287	p.S96L	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
SPATA19	219938	genome.wustl.edu	37	11	133712412	133712412	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	133712412	133712412	G	A	SNP	SPATA19	NM_174927	human	genbank	57_37b	-1	provisional	silent	c.405	p.I135	0.022	NULL	NULL	-	no_errors
SSPO	23145	genome.wustl.edu	37	7	149528262	149528262	+	Nonsense_Mutation	SNP	C	C	T	rs10261977	byCluster;byFrequency;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	149528262	149528262	C	T	SNP	SSPO	ENST00000378016	human	ensembl	57_37b	+1	known	nonsense	c.15181	p.R5061*	0.997	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_VWC,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_BPTI_KUNITZ_1,PatternScan_GLYCO_HORMONE_BETA_1,PatternScan_EGF_1,PatternScan_VWFC_1	-	
TGFBR1	7046	genome.wustl.edu	37	9	101908824	101908824	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	101908824	101908824	C	G	SNP	TGFBR1	NM_004612	human	genbank	57_37b	+1	reviewed	missense	c.1188	p.F396L	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase	superfamily_Snake toxin-like,HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_SM00467,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMSmart_SM00219,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TGFBR2	7048	genome.wustl.edu	37	3	30691805	30691805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	30691805	30691805	G	A	SNP	TGFBR2	NM_001024847	human	genbank	57_37b	+1	reviewed	missense	c.382	p.D128N	1.000	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like	HMMPfam_ecTbetaR2,superfamily_Snake toxin-like,HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
TRIM5	85363	genome.wustl.edu	37	11	5686469	5686469	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5686469	5686469	G	C	SNP	TRIM5	NM_033034	human	genbank	57_37b	-1	reviewed	missense	c.1052	p.S351C	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
TUBBP5	0	genome.wustl.edu	37	9	141071874	141071874	+	RNA	SNP	A	A	G	rs2434922	byCluster;by1000genomes	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	141071874	141071874	A	G	SNP	TUBBP5	NR_027156	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.003	-	-	-	
VSIG1	340547	genome.wustl.edu	37	X	107315933	107315933	+	Missense_Mutation	SNP	G	G	A	rs17254305	byCluster;byFrequency	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107315933	107315933	G	A	SNP	VSIG1	NM_182607	human	genbank	57_37b	+1	reviewed	missense	c.439	p.V147I	0.919	superfamily_SSF48726	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMSmart_IGc2,HMMPfam_ig	-	
WSCD1	23302	genome.wustl.edu	37	17	6021367	6021367	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6021367	6021367	G	A	SNP	WSCD1	NM_015253	human	genbank	57_37b	+1	validated	missense	c.1234	p.E412K	1.000	superfamily_SSF52540	HMMSmart_WSC,HMMPfam_WSC,superfamily_SSF52540	-	no_errors
XIRP2	129446	genome.wustl.edu	37	2	167760302	167760302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	167760302	167760302	C	T	SNP	XIRP2	NM_152381	human	genbank	57_37b	+1	validated	missense	c.310	p.R104W	0.021	NULL	HMMPfam_Xin	-	no_errors
ZNF131	7690	genome.wustl.edu	37	5	43175143	43175143	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43175143	43175143	G	C	SNP	ZNF131	NM_003432	human	genbank	57_37b	+1	validated	missense	c.1678	p.D560H	0.003	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors
ZNF268	10795	genome.wustl.edu	37	12	133779637	133779637	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	133779637	133779637	C	T	SNP	ZNF268	NM_003415	human	genbank	57_37b	+1	validated	silent	c.1365	p.F455	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF484	83744	genome.wustl.edu	37	9	95608938	95608938	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95608938	95608938	G	C	SNP	ZNF484	NM_031486	human	genbank	57_37b	-1	provisional	missense	c.2131	p.Q711E	0.998	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF484	83744	genome.wustl.edu	37	9	95609116	95609116	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95609116	95609116	G	C	SNP	ZNF484	NM_031486	human	genbank	57_37b	-1	provisional	silent	c.1953	p.L651	0.036	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF484	83744	genome.wustl.edu	37	9	95610467	95610467	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95610467	95610467	G	C	SNP	ZNF484	NM_031486	human	genbank	57_37b	-1	provisional	missense	c.602	p.S201C	0.039	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF521	25925	genome.wustl.edu	37	18	22806691	22806691	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	22806691	22806691	C	T	SNP	ZNF521	NM_015461	human	genbank	57_37b	-1	validated	silent	c.1191	p.S397	0.002	NULL	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZSCAN12	9753	genome.wustl.edu	37	6	28358960	28358960	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0B5-01A-11D-A12Q-09	TCGA-BH-A0B5-11A-23W-A14O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28358960	28358960	C	T	SNP	ZSCAN12	ENST00000361028	human	ensembl	57_37b	-1	known	silent	c.1107	p.Q369	0.068	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
