Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
A2M	2	genome.wustl.edu	37	12	9230409	9230409	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	9230409	9230409	T	C	SNP	A2M	NM_000014	human	genbank	57_37b	-1	reviewed	missense	c.3164	p.Y1055C	0.143	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N,HMMPfam_A2M_N_2,HMMPfam_A2M,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_comp,superfamily_Alpha-macroglobulin receptor domain,HMMPfam_A2M_recep	-	no_errors
BIRC8	112401	genome.wustl.edu	37	19	53793366	53793366	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53793366	53793366	C	G	SNP	BIRC8	NM_033341	human	genbank	57_37b	-1	validated	missense	c.262	p.E88Q	0.531	superfamily_Inhibitor of apoptosis (IAP) repeat	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_SM00184	-	no_errors
C11orf40	143501	genome.wustl.edu	37	11	4593466	4593466	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4593466	4593466	G	C	SNP	C11orf40	NM_144663	human	genbank	57_37b	-1	provisional	missense	c.367	p.L123V	0.286	NULL	NULL	-	no_errors
C9orf102	56959	genome.wustl.edu	37	9	98638306	98638306	+	Missense_Mutation	SNP	C	C	T	rs56108623	byCluster;byFrequency;by1000genomes	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	98638306	98638306	C	T	SNP	C9orf102	NM_001010895	human	genbank	57_37b	+1	validated	missense	c.19	p.P7S	0.024	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	
C9orf114	51490	genome.wustl.edu	37	9	131587316	131587316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	131587316	131587316	C	T	SNP	C9orf114	NM_016390	human	genbank	57_37b	-1	validated	missense	c.652	p.D218N	1.000	superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB	superfamily_SSF75217,HMMPfam_DUF171,superfamily_Nucleic_acid_OB	-	no_errors
CAMK1	8536	genome.wustl.edu	37	3	9803438	9803438	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	9803438	9803438	C	T	SNP	CAMK1	NM_003656	human	genbank	57_37b	-1	reviewed	missense	c.433	p.E145K	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CCDC88B	283234	genome.wustl.edu	37	11	64111763	64111763	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64111763	64111763	G	A	SNP	CCDC88B	NM_032251	human	genbank	57_37b	+1	reviewed	missense	c.1750	p.E584K	0.825	NULL	NULL	-	no_errors
COL6A3	1293	genome.wustl.edu	37	2	238303252	238303252	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238303252	238303252	C	T	SNP	COL6A3	NM_004369	human	genbank	57_37b	-1	reviewed	silent	c.687	p.T229	0.722	NULL	HMMSmart_SM00327,superfamily_vWA-like,HMMPfam_VWA,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_BPTI-like,HMMSmart_SM00131,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
DLG5	9231	genome.wustl.edu	37	10	79588706	79588706	+	Silent	SNP	G	G	A	rs35323061	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	79588706	79588706	G	A	SNP	DLG5	NM_004747	human	genbank	57_37b	-1	reviewed	silent	c.2223	p.A741	0.053	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PDZ	superfamily_DEATH domain,HMMPfam_CARD,HMMPfam_DUF622,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,PatternScan_RCC1_2,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00072,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C	-	
DMD	1756	genome.wustl.edu	37	X	32717338	32717338	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	32717338	32717338	T	C	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.722	p.Q241R	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
ENOPH1	58478	genome.wustl.edu	37	4	83375938	83375938	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	83375938	83375938	C	G	SNP	ENOPH1	NM_021204	human	genbank	57_37b	+1	validated	missense	c.453	p.I151M	1.000	superfamily_HAD-like,HMMPfam_Hydrolase	superfamily_HAD-like,HMMPfam_Hydrolase	-	no_errors
ENSG00000223124	0	genome.wustl.edu	37	5	79947889	79947889	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79947889	79947889	A	G	SNP	ENSG00000223124	ENST00000411192	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.999	-	-	-	no_errors
ENSG00000246655	0	genome.wustl.edu	37	8	8559898	8559898	+	RNA	SNP	G	A	A	rs11995449	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	8559898	8559898	G	A	SNP	ENSG00000246655	ENST00000499594	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.001	-	-	-	
FCRL3	115352	genome.wustl.edu	37	1	157650538	157650538	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157650538	157650538	C	T	SNP	FCRL3	NM_052939	human	genbank	57_37b	-1	reviewed	silent	c.1980	p.P660	0.001	NULL	superfamily_Immunoglobulin,PatternScan_N6_MTASE,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
FRAS1	80144	genome.wustl.edu	37	4	79396611	79396611	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79396611	79396611	G	A	SNP	FRAS1	NM_025074	human	genbank	57_37b	+1	reviewed	missense	c.7699	p.A2567T	1.000	HMMSmart_SM00237,HMMPfam_Calx-beta	HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMPfam_VWC,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00181,HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
ITGAX	3687	genome.wustl.edu	37	16	31393187	31393187	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31393187	31393187	G	A	SNP	ITGAX	NM_000887	human	genbank	57_37b	+1	reviewed	missense	c.3451	p.E1151K	0.001	NULL	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
KIAA0090	23065	genome.wustl.edu	37	1	19559537	19559537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19559537	19559537	C	T	SNP	KIAA0090	NM_015047	human	genbank	57_37b	-1	predicted	missense	c.1525	p.A509T	1.000	superfamily_Quinoprotein alcohol dehydrogenase-like	superfamily_Quinoprotein alcohol dehydrogenase-like,HMMPfam_DUF1620	-	no_errors
KLHL35	283212	genome.wustl.edu	37	11	75133746	75133746	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	75133746	75133746	C	T	SNP	KLHL35	NM_001039548	human	genbank	57_37b	-1	validated	missense	c.970	p.E324K	1.000	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612,HMMPfam_Kelch_2	-	no_errors
LOC399744	399744	genome.wustl.edu	37	10	38737534	38737534	+	RNA	SNP	G	G	C	rs10827869	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	38737534	38737534	G	C	SNP	LOC399744	NR_024497	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.823	-	-	-	
LOC441806	441806	genome.wustl.edu	37	18	856809	856809	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	856809	856809	G	T	SNP	LOC441806	XM_002344135	human	genbank	57_37b	+1	model	nonsense	c.196	p.E66*	1.000	HMMPfam_SAC3_GANP	HMMPfam_SAC3_GANP	-	no_errors
LOC728470	728470	genome.wustl.edu	37	X	134326855	134326855	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	134326855	134326855	T	A	SNP	LOC728470	XM_002343844	human	genbank	57_37b	-1	model	missense	c.253	p.I85L	0.000	NULL	NULL	-	no_errors
MAPKAPK3	7867	genome.wustl.edu	37	3	50679183	50679183	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50679183	50679183	C	A	SNP	MAPKAPK3	NM_004635	human	genbank	57_37b	+1	reviewed	missense	c.405	p.D135E	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NDUFAF1	51103	genome.wustl.edu	37	15	41687218	41687219	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	41687218	41687219	AA	-	DEL	NDUFAF1	NM_016013	human	genbank	57_37b	-1	validated	frame_shift_del	c.598_597	p.Y200fs	0.999:0.939	HMMPfam_CIA30	HMMPfam_CIA30	(deletion:cds_exon[41687057,41687242])	no_errors
OR6C65	403282	genome.wustl.edu	37	12	55794894	55794894	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	55794894	55794894	G	A	SNP	OR6C65	NM_001005518	human	genbank	57_37b	+1	provisional	silent	c.582	p.E194	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178952054	178952054	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952054	178952054	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.3109	p.E1037K	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRCP	5547	genome.wustl.edu	37	11	82536048	82536048	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	82536048	82536048	G	A	SNP	PRCP	NM_199418	human	genbank	57_37b	-1	reviewed	missense	c.1454	p.A485V	0.032	HMMPfam_Peptidase_S28	HMMPfam_Peptidase_S28,superfamily_SSF53474	-	no_errors
PRMT3	10196	genome.wustl.edu	37	11	20486016	20486016	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	20486016	20486016	G	A	SNP	PRMT3	NM_005788	human	genbank	57_37b	+1	validated	missense	c.1271	p.C424Y	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	PatternScan_ZINC_FINGER_C2H2_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors
RCE1	9986	genome.wustl.edu	37	11	66613002	66613002	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66613002	66613002	T	G	SNP	RCE1	NM_005133	human	genbank	57_37b	+1	reviewed	silent	c.723	p.G241	0.997	HMMPfam_Abi	HMMPfam_Abi	-	no_errors
SECISBP2L	9728	genome.wustl.edu	37	15	49309150	49309150	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	49309150	49309150	G	A	SNP	SECISBP2L	NM_014701	human	genbank	57_37b	-1	provisional	silent	c.1179	p.T393	0.960	NULL	superfamily_SSF55315,HMMPfam_Ribosomal_L7Ae	-	no_errors
SHPRH	257218	genome.wustl.edu	37	6	146276233	146276233	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	146276233	146276233	C	G	SNP	SHPRH	NM_001042683	human	genbank	57_37b	-1	validated	missense	c.226	p.V76L	0.000	NULL	"superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00526,HMMPfam_Linker_histone,superfamily_""Winged helix"" DNA-binding domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_RING/U-box,HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMSmart_SM00490,HMMPfam_Helicase_C"	-	no_errors
SLC25A29	123096	genome.wustl.edu	37	14	100759046	100759046	+	Silent	SNP	C	C	A	rs3825555	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	100759046	100759046	C	A	SNP	SLC25A29	NM_001039355	human	genbank	57_37b	-1	validated	silent	c.486	p.T162	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	HMMPfam_Mito_carr,superfamily_Mitochondrial carrier	-	
SLC26A9	115019	genome.wustl.edu	37	1	205899028	205899028	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205899028	205899028	T	C	SNP	SLC26A9	NM_134325	human	genbank	57_37b	-1	reviewed	missense	c.709	p.I237V	1.000	HMMPfam_Sulfate_transp	HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS	-	no_errors
SLC9A6	10479	genome.wustl.edu	37	X	135126700	135126700	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135126700	135126700	T	A	SNP	SLC9A6	NM_001042537	human	genbank	57_37b	+1	validated	silent	c.1923	p.T641	0.053	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
SPEN	23013	genome.wustl.edu	37	1	16262615	16262615	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16262615	16262615	C	T	SNP	SPEN	NM_015001	human	genbank	57_37b	+1	reviewed	nonsense	c.9880	p.Q3294*	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_SPOC-like,HMMPfam_SPOC	-	no_errors
SPRED1	161742	genome.wustl.edu	37	15	38614571	38614571	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	38614571	38614571	G	A	SNP	SPRED1	NM_152594	human	genbank	57_37b	+1	reviewed	missense	c.337	p.D113N	1.000	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like	HMMPfam_WH1,HMMSmart_SM00461,superfamily_PH domain-like,HMMPfam_Sprouty	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7576855	7576855	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7576855	7576855	G	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	nonsense	c.991	p.Q331*	0.999	HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
WNK2	65268	genome.wustl.edu	37	9	96051418	96051418	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A18H-01A-11D-A12B-09	TCGA-BH-A18H-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	96051418	96051418	A	C	SNP	WNK2	NM_006648	human	genbank	57_37b	+1	reviewed	missense	c.4382	p.E1461A	0.054	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
