Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA5	23461	genome.wustl.edu	37	17	67283782	67283782	+	Silent	SNP	A	A	G	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67283782	67283782	A	G	SNP	ABCA5	NM_018672	human	genbank	57_37b	-1	reviewed	silent	c.2013	p.H671	0.975	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
AKR1C2	1646	genome.wustl.edu	37	10	5043762	5043762	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	5043762	5043762	G	A	SNP	AKR1C2	NM_001354	human	genbank	57_37b	-1	reviewed	nonsense	c.196	p.R66*	0.007	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red	PatternScan_ALDOKETO_REDUCTASE_1,superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_2,PatternScan_ALDOKETO_REDUCTASE_3	-	no_errors
ALDH18A1	5832	genome.wustl.edu	37	10	97386504	97386504	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	97386504	97386504	C	T	SNP	ALDH18A1	NM_002860	human	genbank	57_37b	-1	reviewed	missense	c.1108	p.A370T	1.000	superfamily_ALDH-like	superfamily_Carbamate kinase-like,HMMPfam_AA_kinase,PatternScan_GLUTAMATE_5_KINASE,superfamily_ALDH-like,PatternScan_PROA	-	no_errors
ANGPT1	284	genome.wustl.edu	37	8	108359218	108359218	+	Silent	SNP	G	G	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	108359218	108359218	G	C	SNP	ANGPT1	NM_001146	human	genbank	57_37b	-1	reviewed	silent	c.405	p.L135	0.835	NULL	HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
ANGPTL3	27329	genome.wustl.edu	37	1	63066808	63066808	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	63066808	63066808	G	C	SNP	ANGPTL3	NM_014495	human	genbank	57_37b	+1	reviewed	missense	c.662	p.R221T	1.000	NULL	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
ANO7	50636	genome.wustl.edu	37	2	242157277	242157277	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242157277	242157277	G	T	SNP	ANO7	NM_001001891	human	genbank	57_37b	+1	validated	missense	c.2311	p.G771C	0.575	HMMPfam_DUF590	HMMPfam_DUF590	-	no_errors
ATP6V1H	51606	genome.wustl.edu	37	8	54708209	54708209	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	54708209	54708209	G	A	SNP	ATP6V1H	NM_015941	human	genbank	57_37b	-1	reviewed	missense	c.868	p.R290C	1.000	superfamily_ARM repeat,HMMPfam_V-ATPase_H	superfamily_ARM repeat,HMMPfam_V-ATPase_H	-	no_errors
ATPGD1	57571	genome.wustl.edu	37	11	67186344	67186344	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67186344	67186344	C	A	SNP	ATPGD1	NM_020811	human	genbank	57_37b	+1	validated	missense	c.113	p.T38K	1.000	NULL	HMMPfam_ATP-grasp_3,superfamily_Glutathione synthetase ATP-binding domain-like,PatternScan_CPSASE_2	-	no_errors
B3GALT4	8705	genome.wustl.edu	37	6	33245414	33245414	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	33245414	33245414	T	G	SNP	B3GALT4	NM_003782	human	genbank	57_37b	+1	reviewed	missense	c.218	p.L73R	1.000	NULL	HMMPfam_Galactosyl_T,PatternScan_PARATHYROID	-	no_errors
C6orf54	26236	genome.wustl.edu	37	6	168397094	168397094	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168397094	168397094	G	A	SNP	C6orf54	ENST00000416966	human	ensembl	57_37b	-1	known	silent	c.24	p.C8	0.000	NULL	NULL	-	no_errors
CAPN1	823	genome.wustl.edu	37	11	64973997	64973997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64973997	64973997	C	T	SNP	CAPN1	NM_005186	human	genbank	57_37b	+1	reviewed	missense	c.1417	p.R473C	1.000	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2	PatternScan_THIOL_PROTEASE_HIS,PatternScan_THIOL_PROTEASE_ASN,superfamily_SSF54001,HMMSmart_CysPc,HMMPfam_Peptidase_C2,PatternScan_THIOL_PROTEASE_CYS,HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1	-	no_errors
CDH4	1002	genome.wustl.edu	37	20	60419731	60419731	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60419731	60419731	C	A	SNP	CDH4	NM_001794	human	genbank	57_37b	+1	reviewed	missense	c.584	p.S195Y	0.996	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
CELSR3	1951	genome.wustl.edu	37	3	48694433	48694433	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	48694433	48694433	C	T	SNP	CELSR3	NM_001407	human	genbank	57_37b	-1	reviewed	missense	c.4097	p.R1366H	0.996	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
CHRNB2	1141	genome.wustl.edu	37	1	154542778	154542778	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154542778	154542778	C	G	SNP	CHRNB2	NM_000748	human	genbank	57_37b	+1	reviewed	missense	c.300	p.D100E	1.000	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
COL1A1	1277	genome.wustl.edu	37	17	48273322	48273322	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48273322	48273322	C	T	SNP	COL1A1	NM_000088	human	genbank	57_37b	-1	reviewed	missense	c.1018	p.A340T	0.998	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
COL9A1	1297	genome.wustl.edu	37	6	70942386	70942386	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70942386	70942386	G	A	SNP	COL9A1	NM_001851	human	genbank	57_37b	-1	reviewed	silent	c.2403	p.P801	0.008	HMMPfam_Collagen	HMMSmart_TSPN,superfamily_ConA_like_lec_gl,HMMPfam_Collagen	-	no_errors
CTSF	8722	genome.wustl.edu	37	11	66335472	66335472	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66335472	66335472	C	T	SNP	CTSF	NM_003793	human	genbank	57_37b	-1	reviewed	missense	c.295	p.V99M	0.007	NULL	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Inhibitor_I29,superfamily_SSF54001,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,PatternScan_THIOL_PROTEASE_CYS,PatternScan_THIOL_PROTEASE_HIS	-	no_errors
EIF3G	8666	genome.wustl.edu	37	19	10229782	10229782	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10229782	10229782	G	A	SNP	EIF3G	NM_003755	human	genbank	57_37b	-1	validated	missense	c.133	p.P45S	0.792	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
EML4	27436	genome.wustl.edu	37	2	42472741	42472742	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	42472741	42472742	-	A	INS	EML4	NM_019063	human	genbank	57_37b	+1	validated	frame_shift_ins	c.122_123	p.A43fs	0.999:0.353	NULL	HMMPfam_HELP,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_EF_HAND_1,PatternScan_TRYPSIN_SER,PatternScan_WD_REPEATS_1,PatternScan_HIS_ACID_PHOSPHAT_2	-	no_errors
ENSG00000247165	0	genome.wustl.edu	37	19	6190829	6190830	+	RNA	INS	-	-	AT	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6190829	6190830	-	AT	INS	ENSG00000247165	ENST00000502114	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.015:0.012	-	-	-	no_errors
ERBB2	2064	genome.wustl.edu	37	17	37880261	37880261	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37880261	37880261	G	C	SNP	ERBB2	NM_004448	human	genbank	57_37b	+1	reviewed	missense	c.2305	p.D769H	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_L domain-like,HMMPfam_Recep_L_domain,superfamily_Growth factor receptor domain,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_EF_HAND_1,HMMPfam_YLP	-	no_errors
FLJ25006	124923	genome.wustl.edu	37	17	26938661	26938661	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	26938661	26938661	C	T	SNP	FLJ25006	NM_144610	human	genbank	57_37b	-1	provisional	silent	c.735	p.L245	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
FLJ46321	389763	genome.wustl.edu	37	9	84608727	84608727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	84608727	84608727	G	T	SNP	FLJ46321	NM_001001670	human	genbank	57_37b	+1	validated	missense	c.3342	p.E1114D	0.000	NULL	NULL	-	no_errors
GAD2	2572	genome.wustl.edu	37	10	26534920	26534920	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	26534920	26534920	G	T	SNP	GAD2	NM_000818	human	genbank	57_37b	+1	reviewed	missense	c.911	p.C304F	1.000	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC,PatternScan_DDC_GAD_HDC_YDC	-	no_errors
GARS	2617	genome.wustl.edu	37	7	30643153	30643153	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	30643153	30643153	G	A	SNP	GARS	NM_002047	human	genbank	57_37b	+1	reviewed	missense	c.700	p.E234K	1.000	superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b	HMMPfam_WHEP-TRS,PatternScan_WHEP_TRS_1,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon	-	no_errors
GRIA4	2893	genome.wustl.edu	37	11	105481779	105481779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	105481779	105481779	G	A	SNP	GRIA4	NM_000829	human	genbank	57_37b	+1	reviewed	missense	c.55	p.A19T	1.000	NULL	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
HNRNPH1	3187	genome.wustl.edu	37	5	179043881	179043881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179043881	179043881	C	T	SNP	HNRNPH1	NM_005520	human	genbank	57_37b	-1	reviewed	missense	c.1196	p.G399D	1.000	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152191856	152191856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152191856	152191856	G	T	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	missense	c.2249	p.S750Y	0.004	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
KRT8P12	0	genome.wustl.edu	37	3	160285963	160285963	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	160285963	160285963	C	T	SNP	KRT8P12	ENST00000427889	human	ensembl	57_37b	+1	known	missense	c.140	p.T47I	1.000	HMMPfam_Filament	HMMPfam_Filament	-	no_errors
LOC100129218	0	genome.wustl.edu	37	12	52913583	52913583	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52913583	52913583	G	T	SNP	LOC100129218	XM_001718439	human	genbank	57_37b	+1	model	missense	c.910	p.G304C	0.003	NULL	NULL	-	no_errors
LOC100287382	0	genome.wustl.edu	37	9	52584	52584	+	Missense_Mutation	SNP	C	C	T	rs2492140	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	52584	52584	C	T	SNP	LOC100287382	XM_002342901	human	genbank	57_37b	-1	model	missense	c.889	p.V297I	1.000	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I	superfamily_Phosphoglucomutase first 3 domains,HMMPfam_PGM_PMM_I,PatternScan_PGM_PMM,PatternScan_TRYPSIN_HIS	-	
LOC100288849	0	genome.wustl.edu	37	19	58601320	58601320	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	58601320	58601320	G	C	SNP	LOC100288849	XM_002343702	human	genbank	57_37b	+1	model	missense	c.163	p.D55H	0.063	NULL	NULL	-	no_errors
MLC1	23209	genome.wustl.edu	37	22	50502593	50502595	+	In_Frame_Del	DEL	AGC	AGC	-	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50502593	50502595	AGC	-	DEL	MLC1	NM_015166	human	genbank	57_37b	-1	reviewed	in_frame_del	c.929_927	p.L310in_frame_del	1.000:1.000:1.000	NULL	PatternScan_RIBOSOMAL_S14	(deletion:cds_exon[50502463,50502627])	no_errors
MYT1L	23040	genome.wustl.edu	37	2	1906950	1906950	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	1906950	1906950	G	A	SNP	MYT1L	NM_015025	human	genbank	57_37b	-1	validated	missense	c.1928	p.S643L	1.000	HMMPfam_MYT1	superfamily_SSF103637,HMMPfam_zf-C2HC,HMMPfam_MYT1,PatternScan_EF_HAND_1	-	no_errors
NCKAP1	10787	genome.wustl.edu	37	2	183800041	183800041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	183800041	183800041	C	T	SNP	NCKAP1	NM_205842	human	genbank	57_37b	-1	validated	missense	c.2776	p.A926T	1.000	HMMPfam_Nckap1	HMMPfam_Nckap1	-	no_errors
OR2T11	127077	genome.wustl.edu	37	1	248789815	248789815	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248789815	248789815	G	T	SNP	OR2T11	NM_001001964	human	genbank	57_37b	-1	provisional	silent	c.615	p.L205	0.001	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR6B3	150681	genome.wustl.edu	37	2	240985219	240985219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	240985219	240985219	G	A	SNP	OR6B3	NM_173351	human	genbank	57_37b	-1	provisional	missense	c.271	p.R91C	0.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3R1	5295	genome.wustl.edu	37	5	67589556	67589556	+	Missense_Mutation	SNP	A	A	G	rs3730091	byCluster	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67589556	67589556	A	G	SNP	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	missense	c.1319	p.D440G	1.000	NULL	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	
PROP1	5626	genome.wustl.edu	37	5	177421244	177421244	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	177421244	177421244	G	A	SNP	PROP1	NM_006261	human	genbank	57_37b	-1	reviewed	missense	c.205	p.R69W	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
PSMC2	5701	genome.wustl.edu	37	7	103004751	103004751	+	Silent	SNP	T	T	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103004751	103004751	T	C	SNP	PSMC2	NM_002803	human	genbank	57_37b	+1	reviewed	silent	c.753	p.G251	0.991	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
RABGEF1	27342	genome.wustl.edu	37	7	66236971	66236974	+	Frame_Shift_Del	DEL	CCTG	CCTG	-	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	CCTG	CCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	66236971	66236974	CCTG	-	DEL	RABGEF1	NM_014504	human	genbank	57_37b	+1	validated	frame_shift_del	c.85_88	p.A30fs	0.996:0.997:0.757:1.000	HMMPfam_zf-A20,HMMSmart_ZnF_A20	HMMPfam_zf-A20,HMMSmart_ZnF_A20,superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9	(deletion:cds_exon[66236887,66237065])	no_errors
RABGGTA	5875	genome.wustl.edu	37	14	24737947	24737947	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24737947	24737947	C	T	SNP	RABGGTA	NM_004581	human	genbank	57_37b	-1	validated	missense	c.884	p.R295Q	1.000	superfamily_Prenyl_trans,superfamily_RabGG_trans_A,HMMPfam_RabGGT_insert	superfamily_Prenyl_trans,HMMPfam_PPTA,superfamily_RabGG_trans_A,HMMPfam_RabGGT_insert,superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
SCLT1	132320	genome.wustl.edu	37	4	129880840	129880840	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	129880840	129880840	T	A	SNP	SCLT1	NM_144643	human	genbank	57_37b	-1	validated	missense	c.962	p.E321V	0.006	NULL	NULL	-	no_errors
SGPP2	130367	genome.wustl.edu	37	2	223423433	223423433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	223423433	223423433	G	A	SNP	SGPP2	NM_152386	human	genbank	57_37b	+1	provisional	missense	c.1016	p.R339H	0.997	NULL	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014	-	no_errors
SH2B1	25970	genome.wustl.edu	37	16	28880551	28880551	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	28880551	28880551	C	T	SNP	SH2B1	NM_015503	human	genbank	57_37b	+1	reviewed	missense	c.1156	p.R386C	0.995	NULL	HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
SLC25A19	60386	genome.wustl.edu	37	17	73274371	73274371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73274371	73274371	C	T	SNP	SLC25A19	NM_001126121	human	genbank	57_37b	-1	reviewed	missense	c.505	p.E169K	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr,PatternScan_IG_MHC	-	no_errors
SLC2A9	56606	genome.wustl.edu	37	4	9998464	9998464	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	9998464	9998464	G	A	SNP	SLC2A9	NM_020041	human	genbank	57_37b	-1	reviewed	silent	c.351	p.F117	0.781	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr	superfamily_MFS general substrate transporter,HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_2,PatternScan_SUGAR_TRANSPORT_1	-	no_errors
SLC4A2	6522	genome.wustl.edu	37	7	150761705	150761705	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150761705	150761705	C	T	SNP	SLC4A2	NM_003040	human	genbank	57_37b	+1	validated	missense	c.310	p.R104W	1.000	NULL	superfamily_Phoshotransferase/anion transport protein,HMMPfam_Band_3_cyto,HMMPfam_HCO3_cotransp,PatternScan_ANION_EXCHANGER_1,PatternScan_ANION_EXCHANGER_2	-	no_errors
SLIT3	6586	genome.wustl.edu	37	5	168189673	168189673	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	168189673	168189673	C	G	SNP	SLIT3	NM_003062	human	genbank	57_37b	-1	validated	missense	c.1481	p.R494T	1.000	superfamily_RNI-like	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00368,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_RNI-like,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
SPIRE1	56907	genome.wustl.edu	37	18	12479722	12479722	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12479722	12479722	G	A	SNP	SPIRE1	NM_001128626	human	genbank	57_37b	-1	validated	silent	c.1380	p.A460	0.881	NULL	HMMSmart_SM00750,superfamily_FYVE/PHD zinc finger	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113141625	113141631	+	Splice_Site	DEL	ACCTCTG	ACCTCTG	-	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	ACCTCTG	ACCTCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113141625	113141631	ACCTCTG	-	DEL	SVEP1	NM_153366	human	genbank	57_37b	-1	validated	splice_site_del	c.10408+6_10408+1	e45-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[113139647,113141626], cds_exon[113141627,113141797])	no_errors
TBC1D9B	23061	genome.wustl.edu	37	5	179294634	179294634	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179294634	179294634	G	A	SNP	TBC1D9B	ENST00000444477	human	ensembl	57_37b	-1	known	silent	c.535	p.L179	0.000	NULL	superfamily_SSF47473,HMMPfam_efhand	-	no_errors
TEK	7010	genome.wustl.edu	37	9	27209143	27209143	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	27209143	27209143	G	A	SNP	TEK	NM_000459	human	genbank	57_37b	+1	reviewed	missense	c.2600	p.R867K	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	HMMPfam_Ig_Tie2_1,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF48726,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577558	7577558	G	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.723	p.C242fs	1.000	HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7577499,7577608])	no_errors
TUBB2C	10383	genome.wustl.edu	37	9	140137465	140137465	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140137465	140137465	C	A	SNP	TUBB2C	NM_006088	human	genbank	57_37b	+1	validated	missense	c.795	p.F265L	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
VPS54	51542	genome.wustl.edu	37	2	64147047	64147047	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	64147047	64147047	T	C	SNP	VPS54	NM_016516	human	genbank	57_37b	-1	reviewed	missense	c.2134	p.K712E	1.000	NULL	HMMPfam_Vps54	-	no_errors
ZFPM2	23414	genome.wustl.edu	37	8	106815514	106815514	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	106815514	106815514	G	A	SNP	ZFPM2	NM_012082	human	genbank	57_37b	+1	reviewed	silent	c.3204	p.Q1068	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF12	7559	genome.wustl.edu	37	7	6730822	6730822	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	6730822	6730822	T	C	SNP	ZNF12	NM_016265	human	genbank	57_37b	-1	reviewed	missense	c.1751	p.K584R	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF469	84627	genome.wustl.edu	37	16	88505324	88505324	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A135-01A-11D-A10Y-09	TCGA-C8-A135-10A-02D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88505324	88505324	A	C	SNP	ZNF469	NM_001127464	human	genbank	57_37b	+1	reviewed	missense	c.11362	p.K3788Q	0.210	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
