Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AKAP9	10142	genome.wustl.edu	37	7	91603204	91603204	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	91603204	91603204	T	-	DEL	AKAP9	NM_005751	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.228	p.V77fs	0.000	NULL	PatternScan_CPSASE_2,HMMPfam_PACT_coil_coil	(deletion:cds_exon[91603025,91603282])	no_errors
ARHGAP6	395	genome.wustl.edu	37	X	11162146	11162146	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	11162146	11162146	C	T	SNP	ARHGAP6	NM_013427	human	genbank	57_37b	-1	reviewed	silent	c.2130	p.S710	0.173	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ARHGEF11	9826	genome.wustl.edu	37	1	156907126	156907126	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156907126	156907126	C	T	SNP	ARHGEF11	NM_198236	human	genbank	57_37b	-1	reviewed	missense	c.4355	p.R1452H	0.000	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
ATIC	471	genome.wustl.edu	37	2	216209567	216209568	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216209567	216209568	CT	-	DEL	ATIC	NM_004044	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1293_1294	p.S432fs	0.998:1.000	HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly	superfamily_SSF52335,HMMPfam_MGS,HMMPfam_AICARFT_IMPCHas,HMMSmart_AICARFT_IMPCHas,superfamily_AICARFT_IMPCHas_formly	(deletion:cds_exon[216209502,216209594])	no_errors
ATR	545	genome.wustl.edu	37	3	142176483	142176483	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142176483	142176483	T	C	SNP	ATR	NM_001184	human	genbank	57_37b	-1	reviewed	missense	c.7618	p.M2540V	0.069	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_UME,HMMSmart_SM00802,superfamily_TPR-like,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
C14orf80	283643	genome.wustl.edu	37	14	105965157	105965157	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105965157	105965157	G	T	SNP	C14orf80	NM_001134875	human	genbank	57_37b	+1	validated	silent	c.1155	p.T385	0.000	NULL	NULL	-	no_errors
C15orf2	23742	genome.wustl.edu	37	15	24921813	24921813	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	24921813	24921813	G	T	SNP	C15orf2	NM_018958	human	genbank	57_37b	+1	validated	missense	c.799	p.V267F	0.000	NULL	NULL	-	no_errors
C5orf41	153222	genome.wustl.edu	37	5	172517553	172517553	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	172517553	172517553	C	G	SNP	C5orf41	NM_153607	human	genbank	57_37b	+1	validated	missense	c.371	p.S124C	1.000	NULL	PatternScan_BZIP_BASIC	-	no_errors
CACNG5	27091	genome.wustl.edu	37	17	64875098	64875098	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	64875098	64875098	C	T	SNP	CACNG5	NM_014404	human	genbank	57_37b	+1	reviewed	missense	c.205	p.R69W	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
CD1A	909	genome.wustl.edu	37	1	158225973	158225973	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158225973	158225973	C	T	SNP	CD1A	NM_001763	human	genbank	57_37b	+1	reviewed	nonsense	c.505	p.Q169*	0.000	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726,HMMPfam_C1-set,HMMSmart_IGc1	-	no_errors
CENPI	2491	genome.wustl.edu	37	X	100382636	100382636	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100382636	100382636	G	A	SNP	CENPI	NM_006733	human	genbank	57_37b	+1	reviewed	silent	c.1056	p.Q352	0.868	HMMPfam_Mis6	HMMPfam_Mis6	-	no_errors
CMYA5	202333	genome.wustl.edu	37	5	79028598	79028598	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79028598	79028598	C	T	SNP	CMYA5	NM_153610	human	genbank	57_37b	+1	validated	missense	c.4010	p.S1337L	0.966	NULL	superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_SPRY	-	no_errors
CRMP1	1400	genome.wustl.edu	37	4	5837643	5837643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	5837643	5837643	G	A	SNP	CRMP1	NM_001014809	human	genbank	57_37b	-1	reviewed	missense	c.1622	p.S541L	1.000	superfamily_Metalo_hydrolase	superfamily_Metalo_hydrolase,HMMPfam_Amidohydro_1,superfamily_SSF51556	-	no_errors
CRYBG3	131544	genome.wustl.edu	37	3	97614915	97614915	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97614915	97614915	C	T	SNP	CRYBG3	NM_153605	human	genbank	57_37b	+1	validated	missense	c.1843	p.R615W	1.000	superfamily_gamma-Crystallin-like,HMMPfam_Crystall,HMMSmart_SM00247	superfamily_gamma-Crystallin-like,HMMSmart_SM00247,HMMPfam_Crystall,HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	-	no_errors
DGKG	1608	genome.wustl.edu	37	3	185990120	185990120	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	185990120	185990120	G	C	SNP	DGKG	NM_001346	human	genbank	57_37b	-1	reviewed	missense	c.923	p.T308S	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
DSC2	1824	genome.wustl.edu	37	18	28654837	28654837	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	28654837	28654837	A	G	SNP	DSC2	NM_024422	human	genbank	57_37b	-1	reviewed	missense	c.1700	p.L567P	0.860	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
ENSG00000197426	0	genome.wustl.edu	37	11	4730942	4730942	+	Silent	SNP	G	G	T	rs11033474	byCluster;byFrequency;by1000genomes	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4730942	4730942	G	T	SNP	ENSG00000197426	ENST00000357170	human	ensembl	57_37b	+1	known	silent	c.135	p.L45	0.850	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
ENSG00000225705	0	genome.wustl.edu	37	7	48886213	48886213	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	48886213	48886213	G	T	SNP	ENSG00000225705	ENST00000443460	human	ensembl	57_37b	-1	known	missense	c.1465	p.P489T	0.491	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMSmart_SM00404,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ENSG00000231337	0	genome.wustl.edu	37	7	45008881	45008881	+	RNA	SNP	A	A	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	45008881	45008881	A	T	SNP	ENSG00000231337	ENST00000431284	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	no_errors
ENSG00000246753	0	genome.wustl.edu	37	3	107766170	107766170	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	107766170	107766170	C	T	SNP	ENSG00000246753	ENST00000434673	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors
ENSG00000246895	0	genome.wustl.edu	37	13	111545325	111545325	+	RNA	SNP	T	T	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	111545325	111545325	T	A	SNP	ENSG00000246895	ENST00000499476	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
FUT5	2527	genome.wustl.edu	37	19	5866890	5866890	+	Missense_Mutation	SNP	C	C	T	rs61737302	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	5866890	5866890	C	T	SNP	FUT5	NM_002034	human	genbank	57_37b	-1	validated	missense	c.847	p.V283M	0.993	HMMPfam_Glyco_transf_10	HMMPfam_Glyco_transf_10	-	
GATA3	2625	genome.wustl.edu	37	10	8111501	8111502	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111501	8111502	-	A	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.990_991	p.R330fs	1.000:1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GIN1	54826	genome.wustl.edu	37	5	102432359	102432359	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	102432359	102432359	C	G	SNP	GIN1	NM_017676	human	genbank	57_37b	-1	validated	missense	c.1180	p.D394H	1.000	NULL	HMMPfam_zf-H2C2,superfamily_Ribonuclease H-like,HMMPfam_rve	-	no_errors
GLB1L	79411	genome.wustl.edu	37	2	220102662	220102662	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	220102662	220102662	C	T	SNP	GLB1L	NM_024506	human	genbank	57_37b	-1	provisional	silent	c.1359	p.V453	1.000	NULL	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases	-	no_errors
HDAC3	8841	genome.wustl.edu	37	5	141005299	141005299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141005299	141005299	G	A	SNP	HDAC3	NM_003883	human	genbank	57_37b	-1	reviewed	missense	c.1012	p.L338F	1.000	superfamily_Arginase/deacetylase	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	-	no_errors
HIF3A	64344	genome.wustl.edu	37	19	46825069	46825069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46825069	46825069	C	T	SNP	HIF3A	NM_152795	human	genbank	57_37b	+1	reviewed	missense	c.1181	p.P394L	0.991	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMPfam_PAS_3,HMMSmart_SM00086	-	no_errors
KCNG2	26251	genome.wustl.edu	37	18	77659086	77659086	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	77659086	77659086	T	C	SNP	KCNG2	NM_012283	human	genbank	57_37b	+1	reviewed	missense	c.671	p.V224A	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_BTB/POZ_fold,HMMSmart_BTB,HMMPfam_K_tetra,superfamily_SSF81324,HMMPfam_Ion_trans	-	no_errors
KIAA0528	9847	genome.wustl.edu	37	12	22677465	22677465	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	22677465	22677465	C	T	SNP	KIAA0528	NM_014802	human	genbank	57_37b	-1	predicted	missense	c.542	p.R181Q	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
LOC100131592	0	genome.wustl.edu	37	2	63870607	63870607	+	RNA	SNP	C	C	T	rs262476	byCluster;byFrequency;bySubmitter;byHapMap;by1000genomes	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	63870607	63870607	C	T	SNP	LOC100131592	XR_078251	human	genbank	57_37b	+1	model	rna	NULL	NULL	1.000	-	-	-	
LOC100132707	0	genome.wustl.edu	37	7	154736256	154736256	+	RNA	SNP	G	G	C	rs2293258	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	154736256	154736256	G	C	SNP	LOC100132707	NR_024476	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
LOC643310	643310	genome.wustl.edu	37	X	92543421	92543421	+	RNA	SNP	T	C	C	rs58181080	byCluster	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	92543421	92543421	T	C	SNP	LOC643310	XR_038903	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-	
LOC645969	0	genome.wustl.edu	37	9	6278962	6278962	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	6278962	6278962	T	C	SNP	LOC645969	XM_002342907	human	genbank	57_37b	+1	model	missense	c.218	p.M73T	1.000	HMMPfam_SelT	HMMPfam_SelT	-	no_errors
LYN	4067	genome.wustl.edu	37	8	56912024	56912024	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	56912024	56912024	G	A	SNP	LYN	NM_002350	human	genbank	57_37b	+1	validated	missense	c.1252	p.G418R	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
MFAP3L	9848	genome.wustl.edu	37	4	170912804	170912804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	170912804	170912804	C	T	SNP	MFAP3L	NM_021647	human	genbank	57_37b	-1	validated	missense	c.955	p.V319M	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
MRFAP1L1	114932	genome.wustl.edu	37	4	6711321	6711321	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	6711321	6711321	A	G	SNP	MRFAP1L1	NM_203462	human	genbank	57_37b	-1	validated	silent	c.36	p.P12	0.007	NULL	NULL	-	no_errors
MRPS11	64963	genome.wustl.edu	37	15	89020270	89020270	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89020270	89020270	G	A	SNP	MRPS11	NM_022839	human	genbank	57_37b	+1	reviewed	silent	c.462	p.L154	1.000	superfamily_Translational machinery components,HMMPfam_Ribosomal_S11	superfamily_Translational machinery components,HMMPfam_Ribosomal_S11,PatternScan_RIBOSOMAL_S11	-	no_errors
MTMR8	55613	genome.wustl.edu	37	X	63488612	63488612	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	63488612	63488612	C	T	SNP	MTMR8	NM_017677	human	genbank	57_37b	-1	validated	missense	c.1920	p.M640I	0.000	NULL	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
NAALADL2	254827	genome.wustl.edu	37	3	175042047	175042047	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	175042047	175042047	C	G	SNP	NAALADL2	NM_207015	human	genbank	57_37b	+1	validated	missense	c.1023	p.S341R	0.000	superfamily_Transferrin receptor ectodomain apical domain	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Transferrin receptor ectodomain C-terminal domain	-	no_errors
NLRC4	58484	genome.wustl.edu	37	2	32476278	32476278	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	32476278	32476278	G	A	SNP	NLRC4	ENST00000360906	human	ensembl	57_37b	-1	known	nonsense	c.655	p.Q219*	0.102	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	HMMPfam_CARD,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like	-	no_errors
NYX	60506	genome.wustl.edu	37	X	41333996	41333996	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	41333996	41333996	G	-	DEL	NYX	NM_022567	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1290	p.A431fs	0.027	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT	(deletion:cds_exon[41332744,41334152])	no_errors
OR11G2	390439	genome.wustl.edu	37	14	20665593	20665593	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20665593	20665593	G	A	SNP	OR11G2	NM_001005503	human	genbank	57_37b	+1	provisional	silent	c.99	p.R33	0.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR4F15	390649	genome.wustl.edu	37	15	102358597	102358597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	102358597	102358597	G	A	SNP	OR4F15	NM_001001674	human	genbank	57_37b	+1	provisional	missense	c.208	p.D70N	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR4F6	390648	genome.wustl.edu	37	15	102346324	102346324	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	102346324	102346324	C	T	SNP	OR4F6	NM_001005326	human	genbank	57_37b	+1	provisional	silent	c.402	p.T134	0.070	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OTUD7B	56957	genome.wustl.edu	37	1	149939428	149939428	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	149939428	149939428	C	A	SNP	OTUD7B	NM_020205	human	genbank	57_37b	-1	validated	missense	c.293	p.G98V	1.000	NULL	superfamily_UBA-like,HMMPfam_OTU,HMMSmart_SM00259	-	no_errors
PHYH	5264	genome.wustl.edu	37	10	13325695	13325695	+	Silent	SNP	G	G	T	rs104894178	byCluster	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	13325695	13325695	G	T	SNP	PHYH	NM_006214	human	genbank	57_37b	-1	reviewed	silent	c.823	p.R275	1.000	HMMPfam_PhyH	HMMPfam_PhyH	-	
PIPOX	51268	genome.wustl.edu	37	17	27380585	27380585	+	Missense_Mutation	SNP	G	G	A	rs76753427	byCluster;by1000genomes	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27380585	27380585	G	A	SNP	PIPOX	NM_016518	human	genbank	57_37b	+1	validated	missense	c.632	p.R211H	0.004	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,superfamily_FAD-linked reductases C-terminal domain	-	
PLEKHA6	22874	genome.wustl.edu	37	1	204214761	204214761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204214761	204214761	C	T	SNP	PLEKHA6	NM_014935	human	genbank	57_37b	-1	validated	missense	c.2014	p.D672N	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH	-	no_errors
PPM1E	22843	genome.wustl.edu	37	17	57057854	57057854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	57057854	57057854	C	T	SNP	PPM1E	NM_014906	human	genbank	57_37b	+1	reviewed	missense	c.1730	p.A577V	1.000	NULL	superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C,PatternScan_PP2C	-	no_errors
PSG3	5671	genome.wustl.edu	37	19	43233453	43233453	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	43233453	43233453	G	A	SNP	PSG3	NM_021016	human	genbank	57_37b	-1	validated	silent	c.1065	p.F355	0.000	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
RBM19	9904	genome.wustl.edu	37	12	114380175	114380175	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	114380175	114380175	C	T	SNP	RBM19	NM_016196	human	genbank	57_37b	-1	reviewed	missense	c.1691	p.R564Q	0.294	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMSmart_SM00361	-	no_errors
RUVBL1	8607	genome.wustl.edu	37	3	127800192	127800192	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	127800192	127800192	G	A	SNP	RUVBL1	NM_003707	human	genbank	57_37b	-1	validated	silent	c.1272	p.S424	0.995	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_TIP49	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,HMMPfam_TIP49	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237863760	237863760	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237863760	237863760	C	G	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.9360	p.D3120E	0.998	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SATB2	23314	genome.wustl.edu	37	2	200137283	200137283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	200137283	200137283	C	T	SNP	SATB2	NM_015265	human	genbank	57_37b	-1	reviewed	missense	c.1853	p.R618H	1.000	HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
SGIP1	84251	genome.wustl.edu	37	1	67206375	67206375	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	67206375	67206375	C	A	SNP	SGIP1	NM_032291	human	genbank	57_37b	+1	validated	missense	c.2269	p.P757T	1.000	NULL	HMMPfam_SAFF	-	no_errors
SLC5A1	6523	genome.wustl.edu	37	22	32479101	32479101	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	32479101	32479101	G	A	SNP	SLC5A1	NM_000343	human	genbank	57_37b	+1	validated	silent	c.624	p.T208	0.000	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7579591	7579591	+	Splice_Site	SNP	C	G	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7579591	7579591	C	G	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	splice_site	c.97-1	e3-1	0.023	-	-	-	no_errors
TROVE2	6738	genome.wustl.edu	37	1	193045697	193045697	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	193045697	193045697	G	T	SNP	TROVE2	NM_004600	human	genbank	57_37b	+1	validated	missense	c.868	p.A290S	1.000	HMMPfam_TROVE	HMMPfam_TROVE	-	no_errors
TTBK2	146057	genome.wustl.edu	37	15	43122137	43122137	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43122137	43122137	G	A	SNP	TTBK2	NM_173500	human	genbank	57_37b	-1	reviewed	missense	c.431	p.P144L	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
USP36	57602	genome.wustl.edu	37	17	76831512	76831512	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	76831512	76831512	G	A	SNP	USP36	NM_025090	human	genbank	57_37b	-1	validated	nonsense	c.325	p.R109*	0.999	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,PatternScan_IG_MHC	-	no_errors
WDR90	197335	genome.wustl.edu	37	16	708527	708527	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	708527	708527	G	A	SNP	WDR90	NM_145294	human	genbank	57_37b	+1	provisional	silent	c.2769	p.L923	0.178	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ZNF217	7764	genome.wustl.edu	37	20	52193283	52193283	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52193283	52193283	A	G	SNP	ZNF217	NM_006526	human	genbank	57_37b	-1	validated	missense	c.2020	p.C674R	0.000	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
ZNF597	146434	genome.wustl.edu	37	16	3486606	3486606	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3486606	3486606	C	A	SNP	ZNF597	NM_152457	human	genbank	57_37b	-1	provisional	nonsense	c.1093	p.E365*	0.000	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF646	9726	genome.wustl.edu	37	16	31092215	31092215	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31092215	31092215	C	T	SNP	ZNF646	NM_014699	human	genbank	57_37b	+1	validated	nonsense	c.4570	p.Q1524*	0.273	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF684	127396	genome.wustl.edu	37	1	41006377	41006377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A155-01A-11D-A12B-09	TCGA-E2-A155-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	41006377	41006377	C	T	SNP	ZNF684	NM_152373	human	genbank	57_37b	+1	validated	silent	c.135	p.I45	0.970	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
