| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COAD/1781177/0.GDAC_clinicalDataMerger.Finished/COAD.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_coad.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | COAD |
| Execution Times: | |
| Submitted: | 16:51:23 05-10-12 |
| Completed: | |
| Elapsed: | 00 hrs 06 mins 43 secs |
step 1. GDAC_clinicalDataPicker [id: 178330] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/COAD/1781177/0.GDAC_clinicalDataMerger.Finished/COAD.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_coad.tsv |
| nodeColumn | 1 |
| outPrefix | COAD |
| Output Files: | |
| COAD.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 16:51:51 05-10-12 |
| Completed: | 16:55:51 05-10-12 |
| Elapsed: | 00 hrs 03 mins 59 secs |
step 2. GDAC_clinicalDataPickerReport [id: 178331] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | COAD.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 16:51:51 05-10-12 |
| Completed: | 16:58:05 05-10-12 |
| Elapsed: | 00 hrs 06 mins 13 secs |