| GDAC_clinicalDataPicker1 stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/BRCA/1971008/0.GDAC_clinicalDataMerger.Finished/BRCA.clin.merged.txt |
| GDAC_clinicalDataPicker1 selectFile | file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_brca.tsv |
| GDAC_clinicalDataPicker1 nodeColumn | 1 |
| GDAC_clinicalDataPicker1 outPrefix | BRCA |
| Execution Times: | |
| Submitted: | 08:33:13 04-11-12 |
| Completed: | |
| Elapsed: | 02 hrs 37 mins 43 secs |
step 1. GDAC_clinicalDataPicker [id: 220504] Picks out the clinical paramters of interest
urn:lsid:broadinstitute.org:cancer.genome.analysis:00312:26
| stage2File | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataMerger/BRCA/1971008/0.GDAC_clinicalDataMerger.Finished/BRCA.clin.merged.txt |
| selectFile | file:/xchip/cga/reference/tcga/clinical/2012_08_22/stage3_params_clin_brca.tsv |
| nodeColumn | 1 |
| outPrefix | BRCA |
| Output Files: | |
| BRCA.clin.merged.picked.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 08:42:53 04-11-12 |
| Completed: | 09:57:05 04-11-12 |
| Elapsed: | 01 hrs 14 mins 12 secs |
step 2. GDAC_clinicalDataPickerReport [id: 220505] Clinical data report
urn:lsid:broadinstitute.org:cancer.genome.analysis:00330:50
| picked | BRCA.clin.merged.picked.txt |
| Execution Times: | |
| Submitted: | 08:42:53 04-11-12 |
| Completed: | 11:10:49 04-11-12 |
| Elapsed: | 02 hrs 27 mins 56 secs |