Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACVR2A	92	genome.wustl.edu	37	2	148676122	148676122	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	148676122	148676122	C	G	SNP	ACVR2A	NM_001616	human	genbank	57_37b	+1	reviewed	missense	c.923	p.P308R	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,HMMPfam_Activin_recp,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ADAMDEC1	27299	genome.wustl.edu	37	8	24249788	24249788	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	24249788	24249788	G	A	SNP	ADAMDEC1	NM_014479	human	genbank	57_37b	+1	validated	silent	c.102	p.K34	0.000	HMMPfam_Pep_M12B_propep	PatternScan_CYSTEINE_SWITCH,PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_DISIN	-	no_errors
ADCY8	114	genome.wustl.edu	37	8	131922104	131922104	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	131922104	131922104	C	A	SNP	ADCY8	NM_001115	human	genbank	57_37b	-1	reviewed	missense	c.1490	p.R497L	0.999	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc	HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
AFF2	2334	genome.wustl.edu	37	X	147733566	147733566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	147733566	147733566	C	T	SNP	AFF2	NM_002025	human	genbank	57_37b	+1	reviewed	missense	c.94	p.R32W	0.996	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
AHDC1	27245	genome.wustl.edu	37	1	27875993	27875993	+	Silent	SNP	G	G	A	rs60039430	byCluster;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27875993	27875993	G	A	SNP	AHDC1	NM_001029882	human	genbank	57_37b	-1	validated	silent	c.2634	p.A878	1.000	NULL	HMMSmart_AT_hook,HMMPfam_AT_hook	-	
ARHGAP28	79822	genome.wustl.edu	37	18	6890538	6890538	+	Missense_Mutation	SNP	G	G	A	rs74414891	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	6890538	6890538	G	A	SNP	ARHGAP28	NM_001010000	human	genbank	57_37b	+1	validated	missense	c.1367	p.R456Q	1.000	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	
BAHCC1	57597	genome.wustl.edu	37	17	79409710	79409710	+	Missense_Mutation	SNP	G	G	A	rs12943867	byCluster;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	79409710	79409710	G	A	SNP	BAHCC1	NM_001080519	human	genbank	57_37b	+1	inferred	missense	c.1168	p.G390S	0.990	NULL	PatternScan_ZINC_FINGER_C2H2_1	-	
BAP1	8314	genome.wustl.edu	37	3	52442600	52442600	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52442600	52442600	G	C	SNP	BAP1	NM_004656	human	genbank	57_37b	-1	reviewed	missense	c.145	p.L49V	1.000	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	-	no_errors
C19orf54	284325	genome.wustl.edu	37	19	41248631	41248631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41248631	41248631	C	T	SNP	C19orf54	NM_198476	human	genbank	57_37b	-1	validated	missense	c.763	p.E255K	0.985	NULL	NULL	-	no_errors
C1orf101	257044	genome.wustl.edu	37	1	244735979	244735979	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244735979	244735979	C	G	SNP	C1orf101	NM_001130957	human	genbank	57_37b	+1	validated	missense	c.1855	p.L619V	0.078	NULL	NULL	-	no_errors
C5orf36	285600	genome.wustl.edu	37	5	93739405	93739405	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	93739405	93739405	G	C	SNP	C5orf36	NM_001145678	human	genbank	57_37b	-1	validated	missense	c.2756	p.S919C	0.103	NULL	NULL	-	no_errors
CCDC64B	146439	genome.wustl.edu	37	16	3080989	3080989	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3080989	3080989	C	A	SNP	CCDC64B	NM_001103175	human	genbank	57_37b	-1	validated	missense	c.445	p.A149S	0.996	NULL	NULL	-	no_errors
CELA1	1990	genome.wustl.edu	37	12	51736377	51736377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51736377	51736377	C	T	SNP	CELA1	NM_001971	human	genbank	57_37b	-1	reviewed	missense	c.308	p.S103N	0.961	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CELF6	0	genome.wustl.edu	37	15	72608235	72608235	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	72608235	72608235	G	C	SNP	CELF6	NM_052840	human	genbank	57_37b	-1	reviewed	missense	c.296	p.S99C	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
CHRNA10	57053	genome.wustl.edu	37	11	3687755	3687755	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3687755	3687755	G	C	SNP	CHRNA10	NM_020402	human	genbank	57_37b	-1	provisional	nonsense	c.935	p.S312*	1.000	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
COBRA1	25920	genome.wustl.edu	37	9	140167022	140167022	+	Silent	SNP	G	G	A	rs3204123	byCluster;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140167022	140167022	G	A	SNP	COBRA1	NM_015456	human	genbank	57_37b	+1	validated	silent	c.1551	p.P517	0.000	HMMPfam_COBRA1	HMMPfam_COBRA1	-	
COPG2	26958	genome.wustl.edu	37	7	130347816	130347816	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	130347816	130347816	T	G	SNP	COPG2	ENST00000445977	human	ensembl	57_37b	-1	known	missense	c.234	p.Q78H	0.998	superfamily_ARM repeat,HMMPfam_Adaptin_N	superfamily_ARM repeat,HMMPfam_Adaptin_N	-	no_errors
CRB2	286204	genome.wustl.edu	37	9	126128253	126128253	+	Missense_Mutation	SNP	G	G	C	rs1105222	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	126128253	126128253	G	C	SNP	CRB2	NM_173689	human	genbank	57_37b	+1	validated	missense	c.476	p.G159A	1.000	PatternScan_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	
DAPK3	1613	genome.wustl.edu	37	19	3964285	3964285	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3964285	3964285	C	T	SNP	DAPK3	NM_001348	human	genbank	57_37b	-1	reviewed	silent	c.510	p.A170	0.008	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DNAJB7	150353	genome.wustl.edu	37	22	41257265	41257265	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41257265	41257265	T	C	SNP	DNAJB7	NM_145174	human	genbank	57_37b	-1	provisional	missense	c.734	p.N245S	0.000	NULL	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors
DOCK3	1795	genome.wustl.edu	37	3	50816143	50816143	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50816143	50816143	G	-	DEL	DOCK3	NM_004947	human	genbank	57_37b	+1	validated	frame_shift_del	c.75	p.V26fs	1.000	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2,HMMPfam_Ded_cyto	(deletion:cds_exon[50816106,50816189])	no_errors
DSCAM	1826	genome.wustl.edu	37	21	41719830	41719830	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41719830	41719830	C	A	SNP	DSCAM	NM_001389	human	genbank	57_37b	-1	validated	missense	c.977	p.S326I	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
DYRK1A	1859	genome.wustl.edu	37	21	38850492	38850492	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	38850492	38850492	G	C	SNP	DYRK1A	NM_001396	human	genbank	57_37b	+1	reviewed	missense	c.217	p.D73H	0.998	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
E2F8	79733	genome.wustl.edu	37	11	19251216	19251216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	19251216	19251216	C	T	SNP	E2F8	NM_024680	human	genbank	57_37b	-1	validated	missense	c.1678	p.D560N	0.121	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_E2F_TDP"	-	no_errors
EMID2	136227	genome.wustl.edu	37	7	101090994	101090994	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	101090994	101090994	G	C	SNP	EMID2	ENST00000397927	human	ensembl	57_37b	+1	known	missense	c.311	p.R104T	1.000	HMMPfam_EMI	HMMPfam_EMI,HMMPfam_Collagen	-	no_errors
ENSG00000227385	0	genome.wustl.edu	37	15	34812971	34812971	+	Missense_Mutation	SNP	C	C	T	rs8026466	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34812971	34812971	C	T	SNP	ENSG00000227385	ENST00000444260	human	ensembl	57_37b	+1	known	missense	c.169	p.H57Y	1.000	HMMPfam_GED	HMMPfam_GED	-	
ENSG00000246282	0	genome.wustl.edu	37	19	37642165	37642165	+	RNA	SNP	G	G	A	rs1047333	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37642165	37642165	G	A	SNP	ENSG00000246282	ENST00000500245	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247548	0	genome.wustl.edu	37	14	73711227	73711227	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	73711227	73711227	C	A	SNP	ENSG00000247548	ENST00000501793	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
EPB41L1	2036	genome.wustl.edu	37	20	34763629	34763629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	34763629	34763629	G	A	SNP	EPB41L1	NM_012156	human	genbank	57_37b	+1	reviewed	missense	c.334	p.E112K	1.000	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors
EVC2	132884	genome.wustl.edu	37	4	5564815	5564815	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	5564815	5564815	G	C	SNP	EVC2	NM_147127	human	genbank	57_37b	-1	reviewed	silent	c.3687	p.L1229	0.120	NULL	NULL	-	no_errors
EYS	346007	genome.wustl.edu	37	6	65301291	65301291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	65301291	65301291	G	A	SNP	EYS	NM_001142800	human	genbank	57_37b	-1	reviewed	missense	c.4469	p.S1490L	0.497	superfamily_Concanavalin A-like lectins/glucanases	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
FAM171B	165215	genome.wustl.edu	37	2	187611928	187611928	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187611928	187611928	G	A	SNP	FAM171B	NM_177454	human	genbank	57_37b	+1	validated	silent	c.675	p.L225	0.990	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FAM20B	9917	genome.wustl.edu	37	1	179013003	179013003	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179013003	179013003	C	T	SNP	FAM20B	NM_014864	human	genbank	57_37b	+1	validated	silent	c.21	p.V7	0.769	NULL	HMMPfam_DUF1193	-	no_errors
FAT4	79633	genome.wustl.edu	37	4	126238784	126238784	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	126238784	126238784	C	G	SNP	FAT4	NM_024582	human	genbank	57_37b	+1	validated	missense	c.1218	p.H406Q	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
FLT4	2324	genome.wustl.edu	37	5	180046344	180046344	+	Missense_Mutation	SNP	G	G	C	rs448012	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	180046344	180046344	G	C	SNP	FLT4	NM_182925	human	genbank	57_37b	-1	reviewed	missense	c.2670	p.H890Q	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_V-set,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	
FNDC1	84624	genome.wustl.edu	37	6	159644608	159644608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	159644608	159644608	C	T	SNP	FNDC1	NM_032532	human	genbank	57_37b	+1	validated	missense	c.815	p.S272L	0.102	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
FRMD5	84978	genome.wustl.edu	37	15	44166157	44166157	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44166157	44166157	G	C	SNP	FRMD5	NM_032892	human	genbank	57_37b	-1	validated	missense	c.1639	p.Q547E	1.000	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA	-	no_errors
FZD1	8321	genome.wustl.edu	37	7	90895944	90895944	+	Silent	SNP	C	C	T	rs2232161	by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	90895944	90895944	C	T	SNP	FZD1	NM_003505	human	genbank	57_37b	+1	reviewed	silent	c.1749	p.H583	0.993	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	
GBP7	388646	genome.wustl.edu	37	1	89613445	89613445	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	89613445	89613445	C	G	SNP	GBP7	NM_207398	human	genbank	57_37b	-1	validated	missense	c.1170	p.K390N	0.006	HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GBP,HMMPfam_GBP_C,superfamily_Interferon-induced guanylate-binding protein 1 (GBP1) C-terminal domain	-	no_errors
GNPTG	84572	genome.wustl.edu	37	16	1412632	1412632	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1412632	1412632	G	A	SNP	GNPTG	NM_032520	human	genbank	57_37b	+1	reviewed	silent	c.630	p.R210	0.241	NULL	superfamily_Mannose 6-phosphate receptor domain,HMMPfam_PRKCSH	-	no_errors
GPC5	2262	genome.wustl.edu	37	13	92345967	92345967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	92345967	92345967	C	A	SNP	GPC5	NM_004466	human	genbank	57_37b	+1	reviewed	missense	c.852	p.H284Q	0.684	HMMPfam_Glypican	HMMPfam_Glypican,PatternScan_GLYPICAN	-	no_errors
GUCY2C	2984	genome.wustl.edu	37	12	14804406	14804406	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	14804406	14804406	C	A	SNP	GUCY2C	NM_004963	human	genbank	57_37b	-1	validated	missense	c.1645	p.G549C	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377309	168377309	+	Silent	SNP	G	G	A	rs61743855	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168377309	168377309	G	A	SNP	HGC6.3	NM_001129895	human	genbank	57_37b	-1	predicted	silent	c.24	p.S8	0.996	NULL	NULL	-	
IDUA	3425	genome.wustl.edu	37	4	995919	995919	+	Missense_Mutation	SNP	G	G	C	rs6830825	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	995919	995919	G	C	SNP	IDUA	ENST00000453894	human	ensembl	57_37b	+1	known	missense	c.901	p.G301R	0.005	HMMPfam_Glyco_hydro_39	HMMPfam_Glyco_hydro_39,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F39,superfamily_SSF51011	-	
ITPKB	3707	genome.wustl.edu	37	1	226924234	226924234	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226924234	226924234	C	G	SNP	ITPKB	NM_002221	human	genbank	57_37b	-1	reviewed	missense	c.926	p.R309T	0.000	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
LAMA5	3911	genome.wustl.edu	37	20	60907675	60907675	+	Silent	SNP	G	G	A	rs6142734	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	60907675	60907675	G	A	SNP	LAMA5	NM_005560	human	genbank	57_37b	-1	reviewed	silent	c.3381	p.A1127	0.035	NULL	HMMPfam_Laminin_B,PatternScan_TNFR_NGFR_1,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	
LCK	3932	genome.wustl.edu	37	1	32741215	32741215	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32741215	32741215	C	T	SNP	LCK	NM_001042771	human	genbank	57_37b	+1	reviewed	silent	c.423	p.L141	0.476	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LDLRAD2	401944	genome.wustl.edu	37	1	22141206	22141206	+	Missense_Mutation	SNP	A	A	C	rs10917051	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22141206	22141206	A	C	SNP	LDLRAD2	NM_001013693	human	genbank	57_37b	+1	validated	missense	c.401	p.N134T	1.000	superfamily_CUB	superfamily_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa	-	
LIPG	9388	genome.wustl.edu	37	18	47110100	47110100	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47110100	47110100	G	A	SNP	LIPG	NM_006033	human	genbank	57_37b	+1	reviewed	silent	c.1332	p.L444	0.026	superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors
LOC100129236	0	genome.wustl.edu	37	X	150684073	150684073	+	Silent	SNP	G	G	C	rs61732407	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	150684073	150684073	G	C	SNP	LOC100129236	XM_001716550	human	genbank	57_37b	+1	model	silent	c.96	p.S32	0.000	NULL	NULL	-	
LOC148413	0	genome.wustl.edu	37	1	1337220	1337220	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1337220	1337220	G	A	SNP	LOC148413	NR_015434	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.001	-	-	-	no_errors
LOC646870	646870	genome.wustl.edu	37	1	173331848	173331848	+	RNA	SNP	G	G	T	rs4916333	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173331848	173331848	G	T	SNP	LOC646870	XR_040282	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.119	-	-	-	
LOC728211	728211	genome.wustl.edu	37	18	12076365	12076365	+	RNA	SNP	C	C	A	rs12458258	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	12076365	12076365	C	A	SNP	LOC728211	XR_015403	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.837	-	-	-	
LRRC16A	55604	genome.wustl.edu	37	6	25471408	25471408	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25471408	25471408	C	T	SNP	LRRC16A	NM_017640	human	genbank	57_37b	+1	validated	silent	c.702	p.V234	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
MAGEL2	54551	genome.wustl.edu	37	15	23889829	23889829	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23889829	23889829	C	T	SNP	MAGEL2	NM_019066	human	genbank	57_37b	-1	validated	missense	c.1252	p.D418N	0.267	NULL	HMMPfam_MAGE	-	no_errors
MCAT	27349	genome.wustl.edu	37	22	43529357	43529357	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	43529357	43529357	C	T	SNP	MCAT	NM_173467	human	genbank	57_37b	-1	reviewed	missense	c.865	p.D289N	0.000	superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1	superfamily_FabD/lysophospholipase-like,HMMPfam_Acyl_transf_1,PatternScan_ABC_TRANSPORTER_1,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase	-	no_errors
MCTP2	55784	genome.wustl.edu	37	15	94945238	94945238	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	94945238	94945238	T	C	SNP	MCTP2	NM_018349	human	genbank	57_37b	+1	validated	missense	c.2075	p.I692T	0.677	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
METTL4	64863	genome.wustl.edu	37	18	2567036	2567036	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	2567036	2567036	A	G	SNP	METTL4	NM_022840	human	genbank	57_37b	-1	validated	silent	c.180	p.A60	0.004	NULL	HMMPfam_MT-A70,PatternScan_N6_MTASE	-	no_errors
MICAL1	64780	genome.wustl.edu	37	6	109765484	109765484	+	Silent	SNP	C	C	T	rs35314636	byCluster;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	109765484	109765484	C	T	SNP	MICAL1	NM_022765	human	genbank	57_37b	-1	validated	silent	c.3114	p.V1038	0.101	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	
MPDZ	8777	genome.wustl.edu	37	9	13168444	13168444	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	13168444	13168444	C	T	SNP	MPDZ	NM_003829	human	genbank	57_37b	-1	validated	missense	c.3175	p.E1059K	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	HMMPfam_L27_2,superfamily_L27 domain,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
MRPS22	56945	genome.wustl.edu	37	3	139071564	139071564	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	139071564	139071564	G	C	SNP	MRPS22	NM_020191	human	genbank	57_37b	+1	reviewed	missense	c.808	p.G270R	1.000	HMMPfam_MRP-S22	HMMPfam_MRP-S22	-	no_errors
MUC20	200958	genome.wustl.edu	37	3	195453371	195453371	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195453371	195453371	A	G	SNP	MUC20	NM_152673	human	genbank	57_37b	+1	reviewed	missense	c.1384	p.K462E	0.002	NULL	NULL	-	no_errors
NKAPL	222698	genome.wustl.edu	37	6	28227456	28227456	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28227456	28227456	G	A	SNP	NKAPL	NM_001007531	human	genbank	57_37b	+1	provisional	missense	c.307	p.E103K	0.001	NULL	HMMPfam_DUF926	-	no_errors
NR4A2	4929	genome.wustl.edu	37	2	157184493	157184493	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	157184493	157184493	C	A	SNP	NR4A2	NM_006186	human	genbank	57_37b	-1	reviewed	missense	c.1028	p.G343V	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
OR2J3	442186	genome.wustl.edu	37	6	29080004	29080004	+	Missense_Mutation	SNP	A	A	G	rs114970635	by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29080004	29080004	A	G	SNP	OR2J3	NM_001005216	human	genbank	57_37b	+1	validated	missense	c.337	p.T113A	0.001	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
OR6X1	390260	genome.wustl.edu	37	11	123624853	123624853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123624853	123624853	C	A	SNP	OR6X1	NM_001005188	human	genbank	57_37b	-1	provisional	missense	c.374	p.C125F	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OTOF	9381	genome.wustl.edu	37	2	26690299	26690299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	26690299	26690299	C	G	SNP	OTOF	NM_194248	human	genbank	57_37b	-1	reviewed	missense	c.4161	p.Q1387H	0.978	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerB	-	no_errors
PAMR1	25891	genome.wustl.edu	37	11	35454330	35454330	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	35454330	35454330	G	C	SNP	PAMR1	NM_015430	human	genbank	57_37b	-1	validated	missense	c.1788	p.I596M	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	HMMSmart_EGF,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,superfamily_SSF57196,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PITPNM1	9600	genome.wustl.edu	37	11	67266143	67266143	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67266143	67266143	C	T	SNP	PITPNM1	NM_004910	human	genbank	57_37b	-1	validated	missense	c.1408	p.E470K	0.996	NULL	HMMPfam_IP_trans,superfamily_Bet v1-like,HMMPfam_DDHD,superfamily_HAD-like,HMMPfam_LNS2,HMMSmart_SM00775	-	no_errors
PKD1L1	168507	genome.wustl.edu	37	7	47968840	47968840	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47968840	47968840	C	T	SNP	PKD1L1	NM_138295	human	genbank	57_37b	-1	reviewed	missense	c.1021	p.E341K	0.000	NULL	HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_PKD_channel	-	no_errors
PLD3	23646	genome.wustl.edu	37	19	40880504	40880504	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40880504	40880504	T	G	SNP	PLD3	NM_001031696	human	genbank	57_37b	+1	validated	silent	c.996	p.T332	0.998	HMMPfam_PLD_envelope,superfamily_SSF56024	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors
PPP3CA	5530	genome.wustl.edu	37	4	101982313	101982313	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	101982313	101982313	C	G	SNP	PPP3CA	NM_000944	human	genbank	57_37b	-1	validated	missense	c.1087	p.E363Q	1.000	superfamily_Metallo-dependent phosphatases	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
PSMA3	5684	genome.wustl.edu	37	14	58727739	58727739	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	58727739	58727739	G	A	SNP	PSMA3	NM_002788	human	genbank	57_37b	+1	reviewed	splice_site	c.477+1	e6+1	1.000	-	-	-	no_errors
RALGAPB	57148	genome.wustl.edu	37	20	37182575	37182575	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	37182575	37182575	T	G	SNP	RALGAPB	NM_020336	human	genbank	57_37b	+1	validated	silent	c.3228	p.L1076	0.985	superfamily_Rap/Ran-GAP (Pfam 02145)	superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
RANBP2	5903	genome.wustl.edu	37	2	109371670	109371670	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	109371670	109371670	G	C	SNP	RANBP2	NM_006267	human	genbank	57_37b	+1	reviewed	missense	c.2421	p.Q807H	0.990	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMSmart_RanBD,HMMPfam_Ran_BP1,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,superfamily_CSA_PPIase,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
RBCK1	10616	genome.wustl.edu	37	20	397928	397928	+	Missense_Mutation	SNP	C	C	T	rs6115906	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	397928	397928	C	T	SNP	RBCK1	ENST00000400243	human	ensembl	57_37b	+1	known	missense	c.232	p.R78C	0.000	NULL	superfamily_Ubiquitin-like,superfamily_NZF domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	
REPIN1	29803	genome.wustl.edu	37	7	150068933	150068933	+	Silent	SNP	T	T	C	rs6722	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	150068933	150068933	T	C	SNP	REPIN1	NM_001099695	human	genbank	57_37b	+1	validated	silent	c.774	p.A258	0.797	superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
RSPH4A	345895	genome.wustl.edu	37	6	116949275	116949275	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	116949275	116949275	C	G	SNP	RSPH4A	NM_001010892	human	genbank	57_37b	+1	reviewed	missense	c.1405	p.P469A	0.991	HMMPfam_Radial_spoke	HMMPfam_Radial_spoke	-	no_errors
RYR3	6263	genome.wustl.edu	37	15	34156357	34156357	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34156357	34156357	G	C	SNP	RYR3	NM_001036	human	genbank	57_37b	+1	validated	missense	c.14484	p.L4828F	0.912	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
S1PR5	53637	genome.wustl.edu	37	19	10625067	10625067	+	Silent	SNP	A	A	C	rs6511701	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10625067	10625067	A	C	SNP	S1PR5	NM_030760	human	genbank	57_37b	-1	validated	silent	c.621	p.A207	0.982	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
SDC3	9672	genome.wustl.edu	37	1	31349951	31349951	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	31349951	31349951	C	T	SNP	SDC3	NM_014654	human	genbank	57_37b	-1	reviewed	silent	c.318	p.A106	0.004	HMMPfam_Syndecan	HMMPfam_Syndecan,HMMSmart_SM00294,PatternScan_SYNDECAN	-	no_errors
SLC25A18	83733	genome.wustl.edu	37	22	18072980	18072980	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18072980	18072980	G	A	SNP	SLC25A18	NM_031481	human	genbank	57_37b	+1	provisional	missense	c.926	p.R309H	0.000	NULL	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SMARCA4	6597	genome.wustl.edu	37	19	11097047	11097047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11097047	11097047	C	T	SNP	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	missense	c.538	p.L180F	1.000	HMMPfam_QLQ	HMMPfam_QLQ,superfamily_SSF52540,HMMPfam_HSA,HMMSmart_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SMC1B	27127	genome.wustl.edu	37	22	45782877	45782877	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	45782877	45782877	A	G	SNP	SMC1B	NM_148674	human	genbank	57_37b	-1	validated	missense	c.1781	p.V594A	1.000	superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge,HMMPfam_SMC_hinge	superfamily_SSF52540,HMMPfam_SMC_N,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors
STAG2	10735	genome.wustl.edu	37	X	123199793	123199793	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	123199793	123199793	A	G	SNP	STAG2	NM_001042749	human	genbank	57_37b	+1	validated	missense	c.2093	p.H698R	1.000	superfamily_ARM-type_fold	HMMPfam_STAG,superfamily_ARM-type_fold	-	no_errors
STAT5B	6777	genome.wustl.edu	37	17	40376874	40376874	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	40376874	40376874	G	A	SNP	STAT5B	NM_012448	human	genbank	57_37b	-1	reviewed	missense	c.298	p.R100C	1.000	superfamily_STAT,HMMPfam_STAT_int	superfamily_STAT,HMMPfam_STAT_int,HMMPfam_STAT_alpha,HMMPfam_STAT_bind,superfamily_P53_like_DNA_bnd,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2	-	no_errors
TMEM189	387521	genome.wustl.edu	37	20	48760108	48760108	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	48760108	48760108	C	T	SNP	TMEM189	NM_199129	human	genbank	57_37b	-1	reviewed	missense	c.172	p.A58T	0.983	NULL	HMMPfam_Kua-UEV1_localn	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578443	7578445	+	In_Frame_Del	DEL	AGA	AGA	-	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578443	7578445	AGA	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	in_frame_del	c.487_485	p.IY162in_frame_delN	1.000:0.976:1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors
TRIM38	10475	genome.wustl.edu	37	6	25966837	25966837	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	25966837	25966837	C	G	SNP	TRIM38	NM_006355	human	genbank	57_37b	+1	reviewed	missense	c.87	p.I29M	0.217	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
TRIM68	55128	genome.wustl.edu	37	11	4626420	4626420	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4626420	4626420	C	T	SNP	TRIM68	NM_018073	human	genbank	57_37b	-1	reviewed	silent	c.315	p.L105	0.001	superfamily_SSF57850,HMMPfam_zf-B_box,HMMSmart_BBOX	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
TSSC4	10078	genome.wustl.edu	37	11	2424727	2424727	+	Silent	SNP	C	C	T	rs2234285	byCluster;byFrequency;by1000genomes	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	2424727	2424727	C	T	SNP	TSSC4	NM_005706	human	genbank	57_37b	+1	reviewed	silent	c.864	p.V288	0.001	NULL	NULL	-	
TTLL5	23093	genome.wustl.edu	37	14	76147917	76147917	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	76147917	76147917	C	G	SNP	TTLL5	NM_015072	human	genbank	57_37b	+1	reviewed	missense	c.211	p.R71G	1.000	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
TUBB2C	10383	genome.wustl.edu	37	9	140137952	140137952	+	Missense_Mutation	SNP	G	G	A	rs9897	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140137952	140137952	G	A	SNP	TUBB2C	NM_006088	human	genbank	57_37b	+1	validated	missense	c.1282	p.A428T	1.000	superfamily_Tubulin C-terminal domain-like	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	
UBR2	23304	genome.wustl.edu	37	6	42571368	42571368	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42571368	42571368	T	C	SNP	UBR2	NM_015255	human	genbank	57_37b	+1	provisional	missense	c.574	p.Y192H	0.862	NULL	PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMSmart_SM00396,superfamily_ClpS-like,HMMPfam_ClpS,PatternScan_RCC1_2	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	216371889	216371889	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216371889	216371889	C	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	silent	c.3849	p.L1283	0.001	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
WDR26	80232	genome.wustl.edu	37	1	224592213	224592213	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	224592213	224592213	A	G	SNP	WDR26	NM_025160	human	genbank	57_37b	-1	reviewed	silent	c.777	p.Y259	0.899	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	HMMSmart_SM00668,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
WDR52	55779	genome.wustl.edu	37	3	113049481	113049481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	113049481	113049481	A	G	SNP	WDR52	ENST00000393845	human	ensembl	57_37b	-1	known	missense	c.1094	p.I365T	0.991	NULL	NULL	-	no_errors
WDR7	23335	genome.wustl.edu	37	18	54385213	54385213	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	54385213	54385213	A	G	SNP	WDR7	NM_015285	human	genbank	57_37b	+1	reviewed	missense	c.1597	p.I533V	0.993	superfamily_Prolyl oligopeptidase N-terminal domain,HMMSmart_SM00320	HMMSmart_SM00320,HMMPfam_WD40,superfamily_Prolyl oligopeptidase N-terminal domain,PatternScan_WD_REPEATS_1,superfamily_WD40 repeat-like	-	no_errors
XRRA1	143570	genome.wustl.edu	37	11	74559241	74559241	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	74559241	74559241	C	G	SNP	XRRA1	NM_182969	human	genbank	57_37b	-1	validated	silent	c.1623	p.L541	0.000	NULL	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
ZNF217	7764	genome.wustl.edu	37	20	52192934	52192934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	52192934	52192934	G	A	SNP	ZNF217	NM_006526	human	genbank	57_37b	-1	validated	missense	c.2369	p.A790V	0.937	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
ZNF479	90827	genome.wustl.edu	37	7	57187675	57187675	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	57187675	57187675	G	T	SNP	ZNF479	NM_033273	human	genbank	57_37b	-1	provisional	missense	c.1447	p.H483N	0.982	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ZNF674	641339	genome.wustl.edu	37	X	46359485	46359485	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	46359485	46359485	G	C	SNP	ZNF674	NM_001039891	human	genbank	57_37b	-1	validated	missense	c.1539	p.I513M	0.027	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF674	641339	genome.wustl.edu	37	X	46359952	46359952	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0EQ-01A-11W-A050-09	TCGA-A2-A0EQ-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	46359952	46359952	G	C	SNP	ZNF674	NM_001039891	human	genbank	57_37b	-1	validated	missense	c.1072	p.Q358E	0.003	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
