Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCC11	85320	genome.wustl.edu	37	16	48209200	48209200	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	48209200	48209200	G	C	SNP	ABCC11	NM_032583	human	genbank	57_37b	-1	reviewed	missense	c.3667	p.Q1223E	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	-	no_errors
ACTN1	87	genome.wustl.edu	37	14	69387787	69387787	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	69387787	69387787	G	A	SNP	ACTN1	NM_001130004	human	genbank	57_37b	-1	reviewed	silent	c.276	p.N92	0.785	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,HMMPfam_efhand_Ca_insen	-	no_errors
AKAP13	11214	genome.wustl.edu	37	15	86198828	86198828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	86198828	86198828	G	A	SNP	AKAP13	NM_006738	human	genbank	57_37b	+1	reviewed	missense	c.4555	p.E1519K	0.987	NULL	superfamily_ANK,HMMPfam_RII_binding_1,superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,PatternScan_EF_HAND_1,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	no_errors
ALDH9A1	223	genome.wustl.edu	37	1	165667703	165667703	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	165667703	165667703	G	A	SNP	ALDH9A1	NM_000696	human	genbank	57_37b	-1	reviewed	silent	c.93	p.V31	0.369	superfamily_Aldehyde_DH/Histidinol_DH	superfamily_Aldehyde_DH/Histidinol_DH,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_GLU,PatternScan_ALDEHYDE_DEHYDR_CYS	-	no_errors
ANKRD53	79998	genome.wustl.edu	37	2	71211878	71211878	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71211878	71211878	G	A	SNP	ANKRD53	NM_001115116	human	genbank	57_37b	+1	validated	silent	c.1041	p.S347	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
C1QB	713	genome.wustl.edu	37	1	22987403	22987403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	22987403	22987403	G	A	SNP	C1QB	NM_000491	human	genbank	57_37b	+1	reviewed	missense	c.286	p.G96S	1.000	HMMPfam_Collagen	HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
C1orf127	148345	genome.wustl.edu	37	1	11017751	11017751	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11017751	11017751	C	T	SNP	C1orf127	ENST00000377008	human	ensembl	57_37b	-1	known	silent	c.168	p.L56	1.000	NULL	NULL	-	no_errors
C1orf81	647215	genome.wustl.edu	37	1	200929482	200929482	+	RNA	SNP	A	A	G	rs6427868	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200929482	200929482	A	G	SNP	C1orf81	XR_041455	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.003	-	-	-	
C9orf144B	0	genome.wustl.edu	37	9	34726876	34726876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34726876	34726876	C	T	SNP	C9orf144B	NM_001141917	human	genbank	57_37b	-1	validated	missense	c.361	p.E121K	0.828	NULL	NULL	-	no_errors
CAD	790	genome.wustl.edu	37	2	27465222	27465222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27465222	27465222	G	A	SNP	CAD	NM_004341	human	genbank	57_37b	+1	reviewed	missense	c.6149	p.G2050E	1.000	superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N	superfamily_CP_synthsmall,HMMPfam_CPSase_sm_chain,superfamily_SSF52317,HMMPfam_GATase,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_chain,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_D3,superfamily_SSF52335,HMMPfam_MGS,HMMPfam_Amidohydro_1,superfamily_SSF51556,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,superfamily_Metalo_hydrolase,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_OTCace	-	no_errors
CALN1	83698	genome.wustl.edu	37	7	71868340	71868340	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	71868340	71868340	C	T	SNP	CALN1	NM_031468	human	genbank	57_37b	-1	validated	silent	c.15	p.E5	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,PatternScan_S100_CABP	-	no_errors
CATSPER2	117155	genome.wustl.edu	37	15	43925010	43925010	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43925010	43925010	A	-	DEL	CATSPER2	NM_172095	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.1301	p.L434fs	0.001	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	(deletion:cds_exon[43924915,43925132])	no_errors
CD5	921	genome.wustl.edu	37	11	60885726	60885726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	60885726	60885726	G	A	SNP	CD5	NM_014207	human	genbank	57_37b	+1	validated	missense	c.174	p.M58I	0.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68846043	68846043	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	68846043	68846043	C	-	DEL	CDH1	NM_004360	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1014	p.P339fs	0.001	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	(deletion:cds_exon[68846038,68846166])	no_errors
CDKL4	344387	genome.wustl.edu	37	2	39417556	39417556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	39417556	39417556	G	A	SNP	CDKL4	NM_001009565	human	genbank	57_37b	-1	provisional	missense	c.542	p.S181L	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CELA2B	51032	genome.wustl.edu	37	1	15808198	15808198	+	Missense_Mutation	SNP	C	T	T	rs7520335	byCluster;byFrequency;by2Hit2Allele	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15808198	15808198	C	T	SNP	CELA2B	ENST00000442979	human	ensembl	57_37b	+1	known	missense	c.292	p.R98C	0.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	
CSRNP1	64651	genome.wustl.edu	37	3	39185751	39185751	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	39185751	39185751	G	A	SNP	CSRNP1	NM_033027	human	genbank	57_37b	-1	reviewed	silent	c.657	p.I219	0.897	NULL	NULL	-	no_errors
CTNNBL1	56259	genome.wustl.edu	37	20	36361374	36361374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36361374	36361374	C	T	SNP	CTNNBL1	NM_030877	human	genbank	57_37b	+1	reviewed	missense	c.124	p.R42W	0.840	NULL	HMMPfam_DUF1716,superfamily_ARM repeat	-	no_errors
CTSG	1511	genome.wustl.edu	37	14	25044494	25044494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	25044494	25044494	C	T	SNP	CTSG	NM_001911	human	genbank	57_37b	-1	reviewed	silent	c.180	p.L60	0.993	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CYFIP2	26999	genome.wustl.edu	37	5	156817668	156817671	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	AAGA	AAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156817668	156817671	AAGA	-	DEL	CYFIP2	NM_001037332	human	genbank	57_37b	+1	validated	frame_shift_del	c.3586_3589	p.K1196fs	1.000:1.000:1.000:1.000	HMMPfam_FragX_IP	HMMPfam_FragX_IP	(deletion:cds_exon[156817529,156817676])	no_errors
DBC1	1620	genome.wustl.edu	37	9	121929944	121929944	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	121929944	121929944	G	A	SNP	DBC1	NM_014618	human	genbank	57_37b	-1	validated	silent	c.1704	p.S568	0.822	NULL	HMMSmart_SM00457	-	no_errors
DENND4C	55667	genome.wustl.edu	37	9	19361904	19361904	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	19361904	19361904	A	-	DEL	DENND4C	NM_017925	human	genbank	57_37b	+1	provisional	frame_shift_del	c.4612	p.N1538fs	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_PPR	(deletion:cds_exon[19361844,19361961])	no_errors
ENSG00000245308	0	genome.wustl.edu	37	9	135975880	135975880	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	135975880	135975880	C	A	SNP	ENSG00000245308	ENST00000502236	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000247256	0	genome.wustl.edu	37	13	28016548	28016548	+	RNA	DEL	C	C	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	28016548	28016548	C	-	DEL	ENSG00000247256	ENST00000500313	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	(deletion:rna[28014875,28017138])	no_errors
ERCC5	2073	genome.wustl.edu	37	13	103514694	103514694	+	Missense_Mutation	SNP	G	G	A	rs4150315	byCluster;byFrequency;byHapMap	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	103514694	103514694	G	A	SNP	ERCC5	NM_000123	human	genbank	57_37b	+1	reviewed	missense	c.1195	p.E399K	0.940	superfamily_PIN domain-like	HMMPfam_XPG_N,HMMSmart_SM00485,superfamily_PIN domain-like,PatternScan_XPG_1,HMMSmart_SM00484,HMMPfam_XPG_I,PatternScan_XPG_2,superfamily_5' to 3' exonuclease C-terminal subdomain,HMMSmart_SM00279	-	
F11R	50848	genome.wustl.edu	37	1	160970527	160970527	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	160970527	160970527	G	C	SNP	F11R	NM_016946	human	genbank	57_37b	-1	reviewed	missense	c.282	p.I94M	0.986	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig	-	no_errors
FAM120C	54954	genome.wustl.edu	37	X	54143207	54143207	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	54143207	54143207	C	G	SNP	FAM120C	NM_017848	human	genbank	57_37b	-1	validated	missense	c.2083	p.E695Q	1.000	NULL	NULL	-	no_errors
FUBP1	8880	genome.wustl.edu	37	1	78444657	78444657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78444657	78444657	G	T	SNP	FUBP1	NM_003902	human	genbank	57_37b	-1	reviewed	missense	c.32	p.S11Y	0.117	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1,HMMPfam_DUF1897	-	no_errors
G0S2	50486	genome.wustl.edu	37	1	209849155	209849155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	209849155	209849155	G	A	SNP	G0S2	NM_015714	human	genbank	57_37b	+1	validated	silent	c.126	p.L42	1.000	NULL	NULL	-	no_errors
GLCE	26035	genome.wustl.edu	37	15	69561032	69561032	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	69561032	69561032	A	-	DEL	GLCE	NM_015554	human	genbank	57_37b	+1	validated	frame_shift_del	c.1303	p.K435fs	0.999	HMMPfam_C5-epim_C	HMMPfam_C5-epim_C	(deletion:cds_exon[69560559,69561583])	no_errors
GRIA3	2892	genome.wustl.edu	37	X	122551281	122551281	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	122551281	122551281	C	G	SNP	GRIA3	ENST00000264357	human	ensembl	57_37b	+1	known	missense	c.1529	p.T510S	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
HLA-F	3134	genome.wustl.edu	37	6	29695854	29695854	+	Missense_Mutation	SNP	G	G	A	rs2735059	byCluster;byFrequency;byHapMap	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	29695854	29695854	G	A	SNP	HLA-F	ENST00000399258	human	ensembl	57_37b	+1	known	missense	c.1279	p.E427K	0.202	NULL	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	
HYDIN	54768	genome.wustl.edu	37	16	70891628	70891628	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	70891628	70891628	T	C	SNP	HYDIN	NM_032821	human	genbank	57_37b	-1	validated	missense	c.12272	p.N4091S	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ITPKB	3707	genome.wustl.edu	37	1	226836376	226836376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226836376	226836376	C	T	SNP	ITPKB	NM_002221	human	genbank	57_37b	-1	reviewed	missense	c.2029	p.A677T	1.000	HMMPfam_IPK,superfamily_SAICAR synthase-like	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
KIAA1984	84960	genome.wustl.edu	37	9	139699835	139699835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139699835	139699835	G	A	SNP	KIAA1984	NM_001039374	human	genbank	57_37b	+1	validated	missense	c.874	p.E292K	0.010	NULL	NULL	-	no_errors
KIAA1984	84960	genome.wustl.edu	37	9	139700996	139700996	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139700996	139700996	G	C	SNP	KIAA1984	NM_001039374	human	genbank	57_37b	+1	validated	missense	c.1150	p.E384Q	0.850	NULL	NULL	-	no_errors
LOC100291364	0	genome.wustl.edu	37	1	2949607	2949607	+	Silent	SNP	G	G	C	rs7514166	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	2949607	2949607	G	C	SNP	LOC100291364	XM_002346651	human	genbank	57_37b	+1	model	silent	c.366	p.L122	0.070	NULL	NULL	-	
MAGEC3	139081	genome.wustl.edu	37	X	140969318	140969318	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	140969318	140969318	C	G	SNP	MAGEC3	NM_138702	human	genbank	57_37b	+1	reviewed	missense	c.645	p.I215M	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56178672	56178673	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178672	56178673	-	A	INS	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_ins	c.3645_3646	p.I1215fs	0.977:0.997	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MINPP1	9562	genome.wustl.edu	37	10	89311854	89311854	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89311854	89311854	T	-	DEL	MINPP1	NM_004897	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1083	p.S362fs	0.991	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A	superfamily_Phosphoglycerate mutase-like,HMMPfam_Acid_phosphat_A	(deletion:cds_exon[89311839,89312235])	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1254322	1254322	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1254322	1254322	G	A	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	silent	c.2154	p.L718	0.979	superfamily_Serine proterase inhibitors	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
MXRA5	25878	genome.wustl.edu	37	X	3242309	3242309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	3242309	3242309	C	T	SNP	MXRA5	NM_015419	human	genbank	57_37b	-1	validated	missense	c.1417	p.G473S	0.049	NULL	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors
MYH1	4619	genome.wustl.edu	37	17	10408307	10408307	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10408307	10408307	A	G	SNP	MYH1	NM_005963	human	genbank	57_37b	-1	reviewed	silent	c.2511	p.Y837	1.000	superfamily_SSF52540	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
NAV2	89797	genome.wustl.edu	37	11	19967967	19967967	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	19967967	19967967	C	-	DEL	NAV2	NM_182964	human	genbank	57_37b	+1	validated	frame_shift_del	c.2167	p.R723fs	1.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00033,HMMPfam_CH,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	(deletion:cds_exon[19967947,19968055])	no_errors
NOLC1	9221	genome.wustl.edu	37	10	103920079	103920079	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	103920079	103920079	G	C	SNP	NOLC1	NM_004741	human	genbank	57_37b	+1	validated	missense	c.1078	p.E360Q	0.995	NULL	HMMPfam_SRP40_C	-	no_errors
NPC1	4864	genome.wustl.edu	37	18	21114508	21114508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21114508	21114508	C	T	SNP	NPC1	NM_000271	human	genbank	57_37b	-1	reviewed	missense	c.3493	p.V1165M	1.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
NUP214	8021	genome.wustl.edu	37	9	134015982	134015982	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	134015982	134015982	A	-	DEL	NUP214	NM_005085	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1179	p.T394fs	0.998	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320	(deletion:cds_exon[134015936,134016097])	no_errors
OR52N5	390075	genome.wustl.edu	37	11	5799613	5799613	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5799613	5799613	G	A	SNP	OR52N5	NM_001001922	human	genbank	57_37b	-1	validated	silent	c.252	p.T84	0.003	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR7A5	26659	genome.wustl.edu	37	19	14938475	14938475	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14938475	14938475	A	-	DEL	OR7A5	NM_017506	human	genbank	57_37b	-1	validated	frame_shift_del	c.579	p.N195fs	0.003	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	(deletion:cds_exon[14938094,14939053])	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178952085	178952085	A	T	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047L	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-
PKD1	5310	genome.wustl.edu	37	16	2159446	2159446	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2159446	2159446	G	A	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	nonsense	c.5722	p.Q1908*	0.002	HMMSmart_SM00089,HMMPfam_PKD	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
PLXNA2	5362	genome.wustl.edu	37	1	208255805	208255805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	208255805	208255805	C	T	SNP	PLXNA2	NM_025179	human	genbank	57_37b	-1	reviewed	missense	c.2347	p.V783M	1.000	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
PPP4C	5531	genome.wustl.edu	37	16	30094768	30094768	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30094768	30094768	G	C	SNP	PPP4C	NM_002720	human	genbank	57_37b	+1	provisional	missense	c.357	p.Q119H	1.000	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
PTDSS2	81490	genome.wustl.edu	37	11	489482	489482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	489482	489482	C	T	SNP	PTDSS2	NM_030783	human	genbank	57_37b	+1	provisional	missense	c.937	p.R313C	1.000	HMMPfam_PSS	HMMPfam_PSS	-	no_errors
RAX	30062	genome.wustl.edu	37	18	56936395	56936395	+	Silent	SNP	T	T	C	rs7226481	byCluster;by2Hit2Allele;by1000genomes	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	56936395	56936395	T	C	SNP	RAX	NM_013435	human	genbank	57_37b	-1	reviewed	silent	c.882	p.Q294	0.998	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1,HMMPfam_OAR	-	
RIMBP2	23504	genome.wustl.edu	37	12	130892283	130892283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130892283	130892283	G	A	SNP	RIMBP2	NM_015347	human	genbank	57_37b	-1	validated	silent	c.2913	p.N971	0.999	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060	-	no_errors
RORB	6096	genome.wustl.edu	37	9	77300402	77300402	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	77300402	77300402	C	T	SNP	RORB	NM_006914	human	genbank	57_37b	+1	reviewed	silent	c.1248	p.I416	1.000	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
SAMD3	154075	genome.wustl.edu	37	6	130497064	130497064	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	130497064	130497064	T	-	DEL	SAMD3	NM_001017373	human	genbank	57_37b	-1	validated	frame_shift_del	c.744	p.K248fs	1.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	(deletion:cds_exon[130496986,130497153])	no_errors
SPTY2D1	144108	genome.wustl.edu	37	11	18636609	18636609	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18636609	18636609	G	A	SNP	SPTY2D1	NM_194285	human	genbank	57_37b	-1	validated	silent	c.1212	p.S404	0.681	NULL	HMMPfam_SPT2,HMMSmart_SM00784	-	no_errors
STAC3	246329	genome.wustl.edu	37	12	57638000	57638000	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57638000	57638000	G	A	SNP	STAC3	NM_145064	human	genbank	57_37b	-1	provisional	silent	c.867	p.I289	0.715	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_Cysteine-rich domain,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
TAS2R30	259293	genome.wustl.edu	37	12	11286524	11286524	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11286524	11286524	A	-	DEL	TAS2R30	NM_001097643	human	genbank	57_37b	-1	provisional	frame_shift_del	c.320	p.L107fs	0.622	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	(deletion:cds_exon[11285884,11286843])	no_errors
TMEM104	54868	genome.wustl.edu	37	17	72786402	72786402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72786402	72786402	G	A	SNP	TMEM104	NM_017728	human	genbank	57_37b	+1	validated	missense	c.313	p.E105K	1.000	NULL	HMMPfam_Aa_trans	-	no_errors
TPRX1	284355	genome.wustl.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	GGGCCTGGGATC	GGGCCTGGGATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48305639	48305650	GGGCCTGGGATC	-	DEL	TPRX1	NM_198479	human	genbank	57_37b	-1	validated	in_frame_del	c.629_618	p.PGPI208in_frame_del	0.077:0.077:0.076:0.064:0.061:0.056:0.042:0.003:0.000:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[48305032,48306237])	no_errors
TRAPPC2L	51693	genome.wustl.edu	37	16	88926159	88926159	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	88926159	88926159	G	A	SNP	TRAPPC2L	NM_016209	human	genbank	57_37b	+1	validated	splice_site	c.294+1	e3+1	1.000	-	-	-	no_errors
TRMT2A	27037	genome.wustl.edu	37	22	20102144	20102144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	20102144	20102144	C	T	SNP	TRMT2A	NM_022727	human	genbank	57_37b	-1	validated	missense	c.1186	p.D396N	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_RNA-binding domain RBD,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors
TXNIP	10628	genome.wustl.edu	37	1	145439000	145439000	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	145439000	145439000	T	C	SNP	TXNIP	NM_006472	human	genbank	57_37b	+1	validated	silent	c.198	p.T66	0.829	superfamily_Ig_E-set,HMMPfam_Arrestin_N	superfamily_Ig_E-set,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C	-	no_errors
UBA6	55236	genome.wustl.edu	37	4	68529634	68529634	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68529634	68529634	T	-	DEL	UBA6	NM_018227	human	genbank	57_37b	-1	validated	frame_shift_del	c.929	p.K310fs	0.998	superfamily_Activating enzymes of the ubiquitin-like proteins	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,HMMPfam_UBACT,HMMPfam_UBA_e1_C	(deletion:cds_exon[68529603,68529665])	no_errors
UBOX5	22888	genome.wustl.edu	37	20	3096074	3096074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3096074	3096074	C	T	SNP	UBOX5	NM_014948	human	genbank	57_37b	-1	validated	missense	c.1294	p.E432K	1.000	NULL	superfamily_RING/U-box,HMMPfam_U-box,HMMSmart_SM00504,PatternScan_ZF_RING_1	-	no_errors
URB1	9875	genome.wustl.edu	37	21	33744886	33744886	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33744886	33744886	G	-	DEL	URB1	NM_014825	human	genbank	57_37b	-1	validated	frame_shift_del	c.931	p.L311fs	1.000	NULL	superfamily_ARM repeat	(deletion:cds_exon[33744816,33744940])	no_errors
ZDHHC20	253832	genome.wustl.edu	37	13	21955625	21955625	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21955625	21955625	G	A	SNP	ZDHHC20	NM_153251	human	genbank	57_37b	-1	provisional	silent	c.1005	p.D335	0.996	NULL	HMMPfam_zf-DHHC	-	no_errors
ZNFX1	57169	genome.wustl.edu	37	20	47882678	47882678	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47882678	47882678	G	A	SNP	ZNFX1	NM_021035	human	genbank	57_37b	-1	validated	silent	c.1996	p.L666	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_zf-NF-X1,HMMSmart_SM00438	-	no_errors
