Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABCA6	23460	genome.wustl.edu	37	17	67110993	67110993	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	67110993	67110993	G	C	SNP	ABCA6	NM_080284	human	genbank	57_37b	-1	reviewed	missense	c.1692	p.F564L	0.992	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran	-	no_errors
ANK2	287	genome.wustl.edu	37	4	114275601	114275601	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	114275601	114275601	G	A	SNP	ANK2	NM_001148	human	genbank	57_37b	+1	reviewed	missense	c.5827	p.G1943R	0.386	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
APOB	338	genome.wustl.edu	37	2	21231263	21231263	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21231263	21231263	T	C	SNP	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	missense	c.8477	p.E2826G	0.977	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	-	no_errors
ARG2	384	genome.wustl.edu	37	14	68117462	68117462	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	68117462	68117462	T	C	SNP	ARG2	NM_001172	human	genbank	57_37b	+1	reviewed	missense	c.890	p.V297A	1.000	HMMPfam_Arginase,superfamily_Arginase/deacetylase	HMMPfam_Arginase,superfamily_Arginase/deacetylase,PatternScan_ARGINASE_1,PatternScan_ARGINASE_2,PatternScan_ARGINASE_3	-	no_errors
ASXL2	55252	genome.wustl.edu	37	2	25978944	25978944	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25978944	25978944	G	-	DEL	ASXL2	NM_018263	human	genbank	57_37b	-1	validated	frame_shift_del	c.979	p.N328fs	1.000	NULL	NULL	(deletion:cds_exon[25978887,25978983])	no_errors
B3GNT3	10331	genome.wustl.edu	37	19	17922578	17922578	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17922578	17922578	G	C	SNP	B3GNT3	NM_014256	human	genbank	57_37b	+1	reviewed	missense	c.766	p.E256Q	0.000	HMMPfam_Galactosyl_T	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_Galactosyl_T	-	no_errors
C10orf71	118461	genome.wustl.edu	37	10	50531374	50531374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50531374	50531374	C	T	SNP	C10orf71	NM_001135196	human	genbank	57_37b	+1	validated	missense	c.784	p.P262S	0.003	NULL	PatternScan_SUGAR_TRANSPORT_1	-	no_errors
C16orf89	146556	genome.wustl.edu	37	16	5110367	5110367	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	5110367	5110367	C	T	SNP	C16orf89	NM_152459	human	genbank	57_37b	-1	validated	silent	c.543	p.L181	0.999	NULL	PatternScan_GLYCO_HORMONE_BETA_1	-	no_errors
C2orf78	388960	genome.wustl.edu	37	2	74011468	74011468	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74011468	74011468	C	T	SNP	C2orf78	NM_001080474	human	genbank	57_37b	+1	predicted	missense	c.32	p.S11F	0.004	NULL	NULL	-	no_errors
C9orf117	286207	genome.wustl.edu	37	9	130477768	130477768	+	Missense_Mutation	SNP	G	A	A	rs504434	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	130477768	130477768	G	A	SNP	C9orf117	ENST00000373293	human	ensembl	57_37b	+1	known	missense	c.356	p.G119D	0.041	NULL	NULL	-	
COG7	91949	genome.wustl.edu	37	16	23428334	23428334	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	23428334	23428334	G	A	SNP	COG7	NM_153603	human	genbank	57_37b	-1	validated	silent	c.1246	p.L416	1.000	HMMPfam_COG7	HMMPfam_COG7	-	no_errors
CTBP2	1488	genome.wustl.edu	37	10	126715075	126715075	+	Silent	SNP	T	T	C	rs3781413	byCluster;byFrequency;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	126715075	126715075	T	C	SNP	CTBP2	NM_022802	human	genbank	57_37b	-1	reviewed	silent	c.1254	p.A418	0.256	NULL	superfamily_SSF52283,HMMPfam_2-Hacid_dh,superfamily_NAD(P)-bd,HMMPfam_2-Hacid_dh_C,PatternScan_D_2_HYDROXYACID_DH_3	-	
DMPK	1760	genome.wustl.edu	37	19	46275976	46275976	+	Missense_Mutation	SNP	G	G	C	rs527221	byCluster;byFrequency;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	46275976	46275976	G	C	SNP	DMPK	NM_001081563	human	genbank	57_37b	-1	reviewed	missense	c.1297	p.L433V	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil	-	
EIF3I	8668	genome.wustl.edu	37	1	32691811	32691811	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32691811	32691811	G	A	SNP	EIF3I	NM_003757	human	genbank	57_37b	+1	validated	missense	c.290	p.R97Q	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ENSG00000197358	0	genome.wustl.edu	37	14	28734083	28734083	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	28734083	28734083	C	T	SNP	ENSG00000197358	ENST00000355069	human	ensembl	57_37b	+1	known	silent	c.324	p.S108	1.000	HMMPfam_BNIP3	HMMPfam_BNIP3	-	no_errors
ENSG00000246131	0	genome.wustl.edu	37	14	35032169	35032169	+	RNA	SNP	C	C	T	rs9264	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35032169	35032169	C	T	SNP	ENSG00000246131	ENST00000502060	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247216	0	genome.wustl.edu	37	7	64021578	64021578	+	RNA	SNP	A	A	G	rs7788788	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	64021578	64021578	A	G	SNP	ENSG00000247216	ENST00000499451	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.004	-	-	-	
ENSG00000247481	0	genome.wustl.edu	37	16	85813962	85813962	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	85813962	85813962	G	A	SNP	ENSG00000247481	ENST00000502186	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000247765	0	genome.wustl.edu	37	15	21941263	21941263	+	RNA	SNP	A	G	G	rs4984120	byCluster;by2Hit2Allele;byHapMap	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	21941263	21941263	A	G	SNP	ENSG00000247765	ENST00000500487	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.001	-	-	-	
EPB41L4A	64097	genome.wustl.edu	37	5	111500728	111500730	+	In_Frame_Del	DEL	TTG	TTG	-	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	111500728	111500730	TTG	-	DEL	EPB41L4A	NM_022140	human	genbank	57_37b	-1	validated	in_frame_del	c.2020_2018	p.T673in_frame_del	0.844:0.850:0.998	NULL	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA	(deletion:cds_exon[111500687,111500815])	no_errors
GATA3	2625	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8111433	8111434	CA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	(deletion:intron[8106102,8111435])	no_errors
GGT3P	2679	genome.wustl.edu	37	22	18778612	18778612	+	RNA	SNP	C	C	T	rs71260825	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18778612	18778612	C	T	SNP	GGT3P	NR_003267	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.996	-	-	-	
KIAA1539	80256	genome.wustl.edu	37	9	35107628	35107628	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	35107628	35107628	T	G	SNP	KIAA1539	NM_025182	human	genbank	57_37b	-1	predicted	missense	c.644	p.E215A	0.999	NULL	NULL	-	no_errors
KRT39	390792	genome.wustl.edu	37	17	39120738	39120738	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39120738	39120738	T	-	DEL	KRT39	NM_213656	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.511	p.I171fs	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	(deletion:cds_exon[39120698,39120780])	no_errors
LOC100129478	0	genome.wustl.edu	37	16	281299	281299	+	Missense_Mutation	SNP	G	G	A	rs3760047	byCluster;byHapMap;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	281299	281299	G	A	SNP	LOC100129478	XM_001719774	human	genbank	57_37b	+1	model	missense	c.167	p.G56E	0.963	NULL	NULL	-	
LOC146880	146880	genome.wustl.edu	37	17	62745992	62745992	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	62745992	62745992	C	A	SNP	LOC146880	NR_026899	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.958	-	-	-	no_errors
LRP4	4038	genome.wustl.edu	37	11	46894951	46894951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46894951	46894951	C	T	SNP	LRP4	NM_002334	human	genbank	57_37b	-1	validated	missense	c.4423	p.A1475T	1.000	superfamily_YWTD domain,HMMPfam_Ldl_recept_b,HMMSmart_SM00135	superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b	-	no_errors
MIDN	90007	genome.wustl.edu	37	19	1256998	1256998	+	Silent	SNP	C	T	T	rs9823	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1256998	1256998	C	T	SNP	MIDN	NM_177401	human	genbank	57_37b	+1	validated	silent	c.1134	p.D378	1.000	NULL	superfamily_Ubiquitin-like,HMMSmart_SM00213,HMMPfam_ubiquitin	-	
MTOR	2475	genome.wustl.edu	37	1	11187855	11187855	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	11187855	11187855	C	T	SNP	MTOR	NM_004958	human	genbank	57_37b	-1	reviewed	silent	c.6042	p.E2014	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,superfamily_SSF48452,HMMPfam_FAT,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
NETO1	81832	genome.wustl.edu	37	18	70526294	70526294	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	70526294	70526294	C	A	SNP	NETO1	NM_138966	human	genbank	57_37b	-1	reviewed	missense	c.236	p.C79F	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_LDL receptor-like module,HMMSmart_SM00192,PatternScan_LDLRA_1	-	no_errors
NLRP3	114548	genome.wustl.edu	37	1	247587783	247587783	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	247587783	247587783	G	A	SNP	NLRP3	NM_001079821	human	genbank	57_37b	+1	reviewed	silent	c.1038	p.L346	0.992	HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMSmart_LRR_RI,HMMPfam_LRR_1	-	no_errors
PLCB4	5332	genome.wustl.edu	37	20	9382205	9382205	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	9382205	9382205	C	G	SNP	PLCB4	NM_000933	human	genbank	57_37b	+1	reviewed	missense	c.1579	p.H527D	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl	superfamily_SSF50729,superfamily_SSF47473,HMMPfam_efhand_like,HMMSmart_PLCXc,HMMPfam_PI-PLC-X,superfamily_PLC-like_Pdiesterase_TIM-brl,HMMPfam_PI-PLC-Y,HMMSmart_PLCYc,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2,HMMPfam_DUF1154	-	no_errors
PPL	5493	genome.wustl.edu	37	16	4939022	4939022	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4939022	4939022	T	C	SNP	PPL	NM_002705	human	genbank	57_37b	-1	reviewed	missense	c.2354	p.Q785R	0.990	superfamily_Spectrin repeat,HMMSmart_SM00150	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
RBM12B	389677	genome.wustl.edu	37	8	94746354	94746354	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	94746354	94746354	T	G	SNP	RBM12B	NM_203390	human	genbank	57_37b	-1	validated	missense	c.2285	p.H762P	0.668	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1	-	no_errors
RC3H1	149041	genome.wustl.edu	37	1	173930909	173930909	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173930909	173930909	T	C	SNP	RC3H1	NM_172071	human	genbank	57_37b	-1	validated	missense	c.2156	p.Y719C	1.000	NULL	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,PatternScan_ZF_RING_1,superfamily_CCCH zinc finger,HMMSmart_SM00356,HMMPfam_zf-CCCH	-	no_errors
SEC14L4	284904	genome.wustl.edu	37	22	30891391	30891391	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30891391	30891391	G	A	SNP	SEC14L4	NM_174977	human	genbank	57_37b	-1	reviewed	silent	c.273	p.Y91	0.923	HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO	superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
SERTAD2	9792	genome.wustl.edu	37	2	64863109	64863109	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	64863109	64863109	C	T	SNP	SERTAD2	NM_014755	human	genbank	57_37b	-1	validated	missense	c.897	p.M299I	1.000	NULL	HMMPfam_SERTA	-	no_errors
SIPA1L2	57568	genome.wustl.edu	37	1	232596654	232596654	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	232596654	232596654	T	A	SNP	SIPA1L2	NM_020808	human	genbank	57_37b	-1	validated	missense	c.3074	p.H1025L	0.965	superfamily_PDZ domain-like,HMMSmart_SM00228	superfamily_Rap/Ran-GAP (Pfam 02145),HMMPfam_Rap_GAP,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SLITRK2	84631	genome.wustl.edu	37	X	144903965	144903965	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	144903965	144903965	C	A	SNP	SLITRK2	NM_001144003	human	genbank	57_37b	+1	reviewed	missense	c.22	p.L8I	1.000	NULL	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRNT	-	no_errors
TGM6	343641	genome.wustl.edu	37	20	2377204	2377204	+	Silent	SNP	C	C	T	rs16984872	byCluster;byFrequency;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2377204	2377204	C	T	SNP	TGM6	NM_198994	human	genbank	57_37b	+1	validated	silent	c.477	p.S159	0.415	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	
TJP1	7082	genome.wustl.edu	37	15	30012801	30012802	+	Frame_Shift_Ins	INS	-	-	AA	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	30012801	30012802	-	AA	INS	TJP1	NM_003257	human	genbank	57_37b	-1	validated	frame_shift_ins	c.2524_2523	p.D841fs	1.000:1.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SH3-domain,HMMPfam_SH3_2,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Guanylate_kin,HMMPfam_Gua_kin_assoc_C,HMMPfam_ZU5,HMMSmart_SM00218	-	no_errors
WFIKKN2	124857	genome.wustl.edu	37	17	48913478	48913478	+	Silent	SNP	C	C	T	rs77632597	byCluster;byFrequency;by1000genomes	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48913478	48913478	C	T	SNP	WFIKKN2	NM_175575	human	genbank	57_37b	+1	reviewed	silent	c.180	p.S60	1.000	superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP	PatternScan_KAZAL,superfamily_WAP,HMMPfam_WAP,HMMSmart_WAP,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,HMMPfam_Kazal_2,HMMSmart_KAZAL,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1,superfamily_TIMP_like	-	
ZFHX2	85446	genome.wustl.edu	37	14	23991682	23991682	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23991682	23991682	G	A	SNP	ZFHX2	XM_001720095	human	genbank	57_37b	-1	model	missense	c.7610	p.P2537L	0.845	NULL	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00451,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ZFP161	7541	genome.wustl.edu	37	18	5290912	5290912	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A06T-01A-11W-A019-09	TCGA-A8-A06T-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	5290912	5290912	G	A	SNP	ZFP161	NM_001143823	human	genbank	57_37b	-1	validated	missense	c.1295	p.A432V	1.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
