Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAM10	102	genome.wustl.edu	37	15	58974428	58974428	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	58974428	58974428	C	G	SNP	ADAM10	NM_001110	human	genbank	57_37b	-1	reviewed	missense	c.292	p.D98H	1.000	HMMPfam_Pep_M12B_propep	PatternScan_CYSTEINE_SWITCH,PatternScan_DISINTEGRIN_1,HMMPfam_Pep_M12B_propep,superfamily_SSF55486,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_DISIN,superfamily_Disintegrin	-	no_errors
AMN1	196394	genome.wustl.edu	37	12	31862280	31862280	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	31862280	31862280	G	A	SNP	AMN1	NM_001113402	human	genbank	57_37b	-1	validated	silent	c.118	p.L40	0.983	NULL	superfamily_SSF52047	-	no_errors
ARHGAP17	55114	genome.wustl.edu	37	16	24971256	24971256	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	24971256	24971256	C	G	SNP	ARHGAP17	NM_001006634	human	genbank	57_37b	-1	validated	silent	c.618	p.G206	1.000	HMMPfam_BAR,HMMSmart_SM00721	HMMPfam_BAR,HMMSmart_SM00721,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,PatternScan_AA_TRNA_LIGASE_I	-	no_errors
ATP2B3	492	genome.wustl.edu	37	X	152822475	152822475	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	152822475	152822475	C	T	SNP	ATP2B3	NM_001001344	human	genbank	57_37b	+1	reviewed	silent	c.2427	p.F809	0.601	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Hydrolase,superfamily_HAD-like	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
CACNA1G	8913	genome.wustl.edu	37	17	48646555	48646555	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48646555	48646555	T	C	SNP	CACNA1G	NM_018896	human	genbank	57_37b	+1	validated	silent	c.384	p.F128	0.999	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
CCDC136	64753	genome.wustl.edu	37	7	128446752	128446752	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128446752	128446752	G	A	SNP	CCDC136	NM_022742	human	genbank	57_37b	+1	validated	missense	c.1259	p.C420Y	0.798	NULL	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
CCL11	6356	genome.wustl.edu	37	17	32614626	32614626	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	32614626	32614626	G	A	SNP	CCL11	NM_002986	human	genbank	57_37b	+1	reviewed	missense	c.211	p.D71N	0.001	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	superfamily_Interleukin 8-like chemokines,HMMPfam_IL8,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
CD3G	917	genome.wustl.edu	37	11	118221279	118221279	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118221279	118221279	G	A	SNP	CD3G	NM_000073	human	genbank	57_37b	+1	reviewed	missense	c.320	p.C107Y	1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMPfam_ITAM,HMMSmart_SM00077	-	no_errors
CNTNAP4	85445	genome.wustl.edu	37	16	76350228	76350228	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	76350228	76350228	T	C	SNP	CNTNAP4	ENST00000476707	human	ensembl	57_37b	+1	known	missense	c.13	p.Y5H	0.000	NULL	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
COL14A1	7373	genome.wustl.edu	37	8	121209087	121209087	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	121209087	121209087	G	A	SNP	COL14A1	NM_021110	human	genbank	57_37b	+1	validated	missense	c.494	p.G165D	1.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67645507	67645507	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67645507	67645507	A	G	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	missense	c.772	p.K258E	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CXorf15	55787	genome.wustl.edu	37	X	16838307	16838307	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	16838307	16838307	A	T	SNP	CXorf15	NM_018360	human	genbank	57_37b	+1	reviewed	missense	c.427	p.M143L	1.000	HMMPfam_Taxilin	HMMPfam_Taxilin	-	no_errors
DNAH3	55567	genome.wustl.edu	37	16	21145740	21145740	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	21145740	21145740	G	A	SNP	DNAH3	NM_017539	human	genbank	57_37b	-1	provisional	missense	c.922	p.R308W	0.923	NULL	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_Prefoldin,HMMPfam_Dynein_heavy	-	no_errors
DTX2	113878	genome.wustl.edu	37	7	76121509	76121509	+	Missense_Mutation	SNP	C	C	T	rs2302541	byCluster;byFrequency	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	76121509	76121509	C	T	SNP	DTX2	ENST00000434948	human	ensembl	57_37b	+1	known	missense	c.199	p.R67C	0.015	NULL	superfamily_RING/U-box	-	
ELANE	1991	genome.wustl.edu	37	19	855966	855966	+	Silent	SNP	C	A	A	rs17216649	byCluster;byFrequency;by1000genomes	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	855966	855966	C	A	SNP	ELANE	NM_001972	human	genbank	57_37b	+1	reviewed	silent	c.606	p.S202	0.936	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	
EPHA3	2042	genome.wustl.edu	37	3	89391074	89391074	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	89391074	89391074	C	T	SNP	EPHA3	NM_005233	human	genbank	57_37b	+1	reviewed	silent	c.1140	p.V380	0.709	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_SAM/Pointed domain	-	no_errors
FAM71E2	284418	genome.wustl.edu	37	19	55870662	55870662	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55870662	55870662	G	-	DEL	FAM71E2	NM_001145402	human	genbank	57_37b	-1	predicted	frame_shift_del	c.1574	p.P525fs	0.001	NULL	NULL	(deletion:cds_exon[55869513,55871347])	no_errors
FGFR4	2264	genome.wustl.edu	37	5	176524359	176524359	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176524359	176524359	G	-	DEL	FGFR4	NM_002011	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2220	p.E741fs	0.999	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	(deletion:cds_exon[176524293,176524398])	no_errors
GAS7	8522	genome.wustl.edu	37	17	9837520	9837520	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	9837520	9837520	G	A	SNP	GAS7	NM_201433	human	genbank	57_37b	-1	reviewed	missense	c.848	p.A283V	0.798	HMMPfam_FCH,HMMSmart_SM00055	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_FCH,HMMSmart_SM00055	-	no_errors
GPR155	151556	genome.wustl.edu	37	2	175335282	175335282	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	175335282	175335282	G	C	SNP	GPR155	NM_001033045	human	genbank	57_37b	-1	validated	missense	c.862	p.L288V	1.000	HMMPfam_Mem_trans	"HMMPfam_Mem_trans,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00049,HMMPfam_DEP"	-	no_errors
GPR64	10149	genome.wustl.edu	37	X	19028859	19028859	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	19028859	19028859	G	T	SNP	GPR64	NM_001079858	human	genbank	57_37b	-1	validated	missense	c.1137	p.N379K	0.980	NULL	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
HDAC4	9759	genome.wustl.edu	37	2	240011772	240011772	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	240011772	240011772	C	T	SNP	HDAC4	NM_006037	human	genbank	57_37b	-1	reviewed	missense	c.2306	p.G769E	0.998	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	-	no_errors
HNRNPH3	3189	genome.wustl.edu	37	10	70101734	70101734	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	70101734	70101734	G	A	SNP	HNRNPH3	NM_012207	human	genbank	57_37b	+1	reviewed	splice_site	c.965-1	e9-1	1.000	-	-	-	no_errors
IGSF22	283284	genome.wustl.edu	37	11	18735652	18735652	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	18735652	18735652	C	T	SNP	IGSF22	NM_173588	human	genbank	57_37b	-1	validated	silent	c.1842	p.A614	0.011	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
IQCE	23288	genome.wustl.edu	37	7	2636689	2636689	+	Missense_Mutation	SNP	C	T	T	rs12700146	byCluster;by1000genomes	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	2636689	2636689	C	T	SNP	IQCE	ENST00000423196	human	ensembl	57_37b	+1	known	missense	c.98	p.A33V	0.001	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	
IRS1	3667	genome.wustl.edu	37	2	227661200	227661200	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	227661200	227661200	C	-	DEL	IRS1	NM_005544	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2255	p.G752fs	0.406	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	(deletion:cds_exon[227659726,227663454])	no_errors
KRI1	65095	genome.wustl.edu	37	19	10670359	10670359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10670359	10670359	G	A	SNP	KRI1	NM_023008	human	genbank	57_37b	-1	validated	missense	c.971	p.A324V	0.039	NULL	HMMPfam_Kri1	-	no_errors
KRTAP4-3	85290	genome.wustl.edu	37	17	39324182	39324182	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39324182	39324182	C	T	SNP	KRTAP4-3	NM_033187	human	genbank	57_37b	-1	validated	silent	c.243	p.R81	0.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
KRTAP4-3	85290	genome.wustl.edu	37	17	39324272	39324272	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39324272	39324272	C	T	SNP	KRTAP4-3	NM_033187	human	genbank	57_37b	-1	validated	silent	c.153	p.R51	0.000	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC400986	400986	genome.wustl.edu	37	2	96587542	96587542	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	96587542	96587542	T	-	DEL	LOC400986	XM_001717763	human	genbank	57_37b	-1	model	frame_shift_del	c.1215	p.Q405fs	0.000	NULL	NULL	(deletion:cds_exon[96587530,96587558])	no_errors
LPGAT1	9926	genome.wustl.edu	37	1	211956599	211956600	+	Frame_Shift_Ins	INS	-	-	CT	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	211956599	211956600	-	CT	INS	LPGAT1	NM_014873	human	genbank	57_37b	-1	validated	frame_shift_ins	c.699_698	p.S233fs	1.000:1.000	NULL	superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMSmart_SM00563	-	no_errors
LRRC46	90506	genome.wustl.edu	37	17	45914435	45914435	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45914435	45914435	G	-	DEL	LRRC46	NM_033413	human	genbank	57_37b	+1	provisional	frame_shift_del	c.915	p.A306fs	0.000	NULL	superfamily_Outer arm dynein light chain 1,HMMSmart_SM00365,HMMSmart_SM00369,HMMPfam_LRR_1	(deletion:cds_exon[45914116,45914486])	no_errors
MAN1A2	10905	genome.wustl.edu	37	1	117910860	117910860	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117910860	117910860	C	T	SNP	MAN1A2	NM_006699	human	genbank	57_37b	+1	validated	silent	c.55	p.L19	1.000	NULL	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43820168	43820168	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43820168	43820168	C	A	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	nonsense	c.6497	p.S2166*	1.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MLL5	55904	genome.wustl.edu	37	7	104714064	104714064	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	104714064	104714064	A	G	SNP	MLL5	NM_018682	human	genbank	57_37b	+1	reviewed	splice_site	c.498-2	e5-2	1.000	-	-	-	no_errors
MPHOSPH10	10199	genome.wustl.edu	37	2	71360269	71360269	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71360269	71360269	G	A	SNP	MPHOSPH10	NM_005791	human	genbank	57_37b	+1	reviewed	missense	c.331	p.E111K	0.206	HMMPfam_Mpp10	HMMPfam_Mpp10	-	no_errors
MTMR7	9108	genome.wustl.edu	37	8	17188758	17188758	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	17188758	17188758	C	T	SNP	MTMR7	NM_004686	human	genbank	57_37b	-1	reviewed	missense	c.766	p.G256S	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
MYH13	8735	genome.wustl.edu	37	17	10233721	10233721	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10233721	10233721	C	T	SNP	MYH13	NM_003802	human	genbank	57_37b	-1	validated	silent	c.2418	p.K806	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
NHS	4810	genome.wustl.edu	37	X	17744061	17744061	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	17744061	17744061	C	T	SNP	NHS	NM_198270	human	genbank	57_37b	+1	reviewed	missense	c.1772	p.T591M	0.998	NULL	NULL	-	no_errors
NINL	22981	genome.wustl.edu	37	20	25477324	25477324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	25477324	25477324	C	T	SNP	NINL	NM_025176	human	genbank	57_37b	-1	validated	missense	c.1285	p.E429K	1.000	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
ODZ2	57451	genome.wustl.edu	37	5	167631625	167631625	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167631625	167631625	C	T	SNP	ODZ2	NM_001122679	human	genbank	57_37b	+1	inferred	nonsense	c.3796	p.R1266*	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
OR2T34	127068	genome.wustl.edu	37	1	248737734	248737734	+	Missense_Mutation	SNP	G	G	A	rs946770	byCluster	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248737734	248737734	G	A	SNP	OR2T34	NM_001001821	human	genbank	57_37b	-1	provisional	missense	c.325	p.H109Y	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	
PIWIL1	9271	genome.wustl.edu	37	12	130856048	130856048	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	130856048	130856048	C	G	SNP	PIWIL1	NM_004764	human	genbank	57_37b	+1	reviewed	missense	c.2491	p.P831A	1.000	superfamily_Ribonuclease H-like,HMMPfam_Piwi	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
PKN1	5585	genome.wustl.edu	37	19	14574911	14574911	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	14574911	14574911	G	A	SNP	PKN1	NM_213560	human	genbank	57_37b	+1	reviewed	silent	c.1695	p.S565	0.000	NULL	superfamily_HR1 repeat,HMMSmart_SM00742,HMMPfam_HR1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
PROX2	283571	genome.wustl.edu	37	14	75321979	75321979	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75321979	75321979	G	A	SNP	PROX2	NM_001080408	human	genbank	57_37b	-1	provisional	silent	c.1635	p.A545	1.000	HMMPfam_Prox1,superfamily_Homeodomain-like	HMMPfam_Prox1,superfamily_Homeodomain-like	-	no_errors
SAT1	6303	genome.wustl.edu	37	X	23801965	23801965	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	23801965	23801965	T	C	SNP	SAT1	NM_002970	human	genbank	57_37b	+1	reviewed	missense	c.167	p.V56A	1.000	superfamily_Acyl-CoA N-acyltransferases (Nat)	superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1	-	no_errors
SDR9C7	121214	genome.wustl.edu	37	12	57323336	57323336	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57323336	57323336	G	A	SNP	SDR9C7	NM_148897	human	genbank	57_37b	-1	provisional	missense	c.562	p.R188C	1.000	superfamily_NAD(P)-bd,HMMPfam_adh_short	superfamily_NAD(P)-bd,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
SLC25A31	83447	genome.wustl.edu	37	4	128665852	128665852	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	128665852	128665852	T	C	SNP	SLC25A31	NM_031291	human	genbank	57_37b	+1	validated	silent	c.258	p.N86	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SSH3	54961	genome.wustl.edu	37	11	67076950	67076950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67076950	67076950	G	A	SNP	SSH3	NM_017857	human	genbank	57_37b	+1	validated	missense	c.1144	p.D382N	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
SVEP1	79987	genome.wustl.edu	37	9	113169977	113169977	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113169977	113169977	C	A	SNP	SVEP1	NM_153366	human	genbank	57_37b	-1	validated	nonsense	c.7903	p.E2635*	0.075	NULL	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Growth factor receptor domain,PatternScan_EGF_2,HMMPfam_GCC2_GCC3,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00159,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Pentaxin,HMMPfam_EGF_CA,HMMPfam_EGF_2	-	no_errors
TBC1D10C	374403	genome.wustl.edu	37	11	67174406	67174406	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67174406	67174406	C	-	DEL	TBC1D10C	NM_198517	human	genbank	57_37b	+1	provisional	frame_shift_del	c.757	p.E254fs	1.000	HMMSmart_TBC,HMMPfam_TBC,superfamily_RabGAP_TBC	superfamily_RabGAP_TBC,HMMSmart_TBC,HMMPfam_TBC	(deletion:cds_exon[67174298,67174487])	no_errors
TBX3	6926	genome.wustl.edu	37	12	115115457	115115458	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115115457	115115458	-	T	INS	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.869_868	p.T290fs	1.000:1.000	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
TIRAP	114609	genome.wustl.edu	37	11	126162498	126162498	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	126162498	126162498	C	T	SNP	TIRAP	NM_148910	human	genbank	57_37b	+1	reviewed	missense	c.194	p.T65M	0.000	NULL	superfamily_Toll/Interleukin receptor TIR domain	-	no_errors
TRPV6	55503	genome.wustl.edu	37	7	142575020	142575020	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	142575020	142575020	A	C	SNP	TRPV6	NM_018646	human	genbank	57_37b	-1	validated	missense	c.362	p.L121R	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
VNN1	8876	genome.wustl.edu	37	6	133004427	133004427	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	133004427	133004427	G	A	SNP	VNN1	NM_004666	human	genbank	57_37b	-1	reviewed	missense	c.1394	p.P465L	0.713	NULL	superfamily_Ntlse/CNhydtse,HMMPfam_CN_hydrolase	-	no_errors
ZNF295	49854	genome.wustl.edu	37	21	43412963	43412963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0FS-01A-11W-A050-09	TCGA-AN-A0FS-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	43412963	43412963	C	T	SNP	ZNF295	NM_001098402	human	genbank	57_37b	-1	validated	silent	c.1242	p.Q414	1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
