Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACTA2	59	genome.wustl.edu	37	10	90701048	90701048	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	90701048	90701048	C	T	SNP	ACTA2	NM_001141945	human	genbank	57_37b	-1	reviewed	missense	c.554	p.R185Q	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
ADAMTS13	11093	genome.wustl.edu	37	9	136319570	136319570	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136319570	136319570	C	T	SNP	ADAMTS13	NM_139025	human	genbank	57_37b	+1	reviewed	silent	c.3078	p.A1026	1.000	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Spermadhesin CUB domain"	-	no_errors
ADAMTS18	170692	genome.wustl.edu	37	16	77334207	77334207	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77334207	77334207	T	A	SNP	ADAMTS18	NM_199355	human	genbank	57_37b	-1	reviewed	missense	c.2627	p.Y876F	0.213	superfamily_TSP-1 type 1 repeat	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ADAMTS5	11096	genome.wustl.edu	37	21	28337771	28337771	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	28337771	28337771	C	G	SNP	ADAMTS5	NM_007038	human	genbank	57_37b	-1	reviewed	missense	c.940	p.A314P	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
ANKRD11	29123	genome.wustl.edu	37	16	89349983	89349983	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89349983	89349983	G	A	SNP	ANKRD11	NM_013275	human	genbank	57_37b	-1	validated	silent	c.2967	p.S989	0.000	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
ARHGAP36	0	genome.wustl.edu	37	X	130220600	130220600	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	130220600	130220600	C	T	SNP	ARHGAP36	NM_144967	human	genbank	57_37b	+1	validated	missense	c.1447	p.R483W	0.001	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
ATM	472	genome.wustl.edu	37	11	108235935	108235935	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108235935	108235935	C	T	SNP	ATM	NM_000051	human	genbank	57_37b	+1	reviewed	nonsense	c.8977	p.R2993*	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00146	superfamily_ARM repeat,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
C3orf20	84077	genome.wustl.edu	37	3	14725873	14725873	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	14725873	14725873	C	T	SNP	C3orf20	NM_032137	human	genbank	57_37b	+1	predicted	silent	c.609	p.S203	0.000	NULL	NULL	-	no_errors
C7orf53	286006	genome.wustl.edu	37	7	112124906	112124906	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	112124906	112124906	G	A	SNP	C7orf53	NM_001134468	human	genbank	57_37b	+1	validated	missense	c.35	p.G12D	0.000	NULL	NULL	-	no_errors
C7orf60	154743	genome.wustl.edu	37	7	112462138	112462138	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	112462138	112462138	C	T	SNP	C7orf60	NM_152556	human	genbank	57_37b	-1	validated	nonsense	c.879	p.W293*	1.000	NULL	NULL	-	no_errors
CHL1	10752	genome.wustl.edu	37	3	404937	404937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	404937	404937	C	T	SNP	CHL1	NM_006614	human	genbank	57_37b	+1	reviewed	missense	c.1456	p.R486W	0.045	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060	-	no_errors
CHST9	83539	genome.wustl.edu	37	18	24496830	24496831	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	24496830	24496831	-	A	INS	CHST9	NM_031422	human	genbank	57_37b	-1	validated	frame_shift_ins	c.725_724	p.Y242fs	0.218:0.145	HMMPfam_Sulfotransfer_2	HMMPfam_Sulfotransfer_2	-	no_errors
DOCK7	85440	genome.wustl.edu	37	1	62979249	62979249	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62979249	62979249	C	A	SNP	DOCK7	NM_033407	human	genbank	57_37b	-1	validated	missense	c.4055	p.S1352I	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
ENSG00000214754	0	genome.wustl.edu	37	7	47092580	47092580	+	Missense_Mutation	SNP	T	G	G	rs6961834	byCluster;byFrequency;by2Hit2Allele	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	47092580	47092580	T	G	SNP	ENSG00000214754	ENST00000442518	human	ensembl	57_37b	+1	known	missense	c.958	p.Y320D	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	
FBXO24	26261	genome.wustl.edu	37	7	100187289	100187289	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100187289	100187289	G	T	SNP	FBXO24	ENST00000427939	human	ensembl	57_37b	+1	known	missense	c.26	p.R9L	0.000	NULL	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_RCC1/BLIP-II	-	no_errors
FBXO27	126433	genome.wustl.edu	37	19	39517580	39517580	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39517580	39517580	T	C	SNP	FBXO27	NM_178820	human	genbank	57_37b	-1	provisional	missense	c.638	p.Q213R	0.360	HMMPfam_FBA,superfamily_Gal_bind_like	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,HMMPfam_FBA,superfamily_Gal_bind_like	-	no_errors
FSD1	79187	genome.wustl.edu	37	19	4311943	4311943	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	4311943	4311943	G	A	SNP	FSD1	NM_024333	human	genbank	57_37b	+1	reviewed	missense	c.595	p.V199M	1.000	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	HMMSmart_BBC,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMPfam_SPRY	-	no_errors
GABRR3	200959	genome.wustl.edu	37	3	97726675	97726675	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	97726675	97726675	C	G	SNP	GABRR3	ENST00000329044	human	ensembl	57_37b	-1	known	missense	c.3	p.M1I	1.000	HMMPfam_Neur_chan_LBD	HMMPfam_Neur_chan_LBD,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
GBE1	2632	genome.wustl.edu	37	3	81698093	81698093	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	81698093	81698093	G	C	SNP	GBE1	ENST00000264326	human	ensembl	57_37b	-1	known	missense	c.605	p.S202C	1.000	superfamily_(Trans)glycosidases	superfamily_E set domains,HMMPfam_CBM_48,superfamily_(Trans)glycosidases,HMMSmart_SM00642,HMMPfam_Alpha-amylase,superfamily_Glycosyl hydrolase domain,HMMPfam_Alpha-amylase_C	-	no_errors
GOSR1	9527	genome.wustl.edu	37	17	28817222	28817222	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	28817222	28817222	C	T	SNP	GOSR1	NM_004871	human	genbank	57_37b	+1	reviewed	nonsense	c.427	p.R143*	1.000	HMMPfam_V-SNARE	HMMPfam_V-SNARE	-	no_errors
GTF3C3	9330	genome.wustl.edu	37	2	197662581	197662581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	197662581	197662581	C	T	SNP	GTF3C3	NM_012086	human	genbank	57_37b	-1	provisional	missense	c.154	p.E52K	0.995	NULL	HMMSmart_SM00028,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
GTSE1	51512	genome.wustl.edu	37	22	46712078	46712078	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	46712078	46712078	G	A	SNP	GTSE1	NM_016426	human	genbank	57_37b	+1	reviewed	missense	c.1201	p.D401N	0.000	NULL	NULL	-	no_errors
LOC100287751	0	genome.wustl.edu	37	1	167737311	167737311	+	Missense_Mutation	SNP	G	G	T	rs10918761	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	167737311	167737311	G	T	SNP	LOC100287751	XM_002342150	human	genbank	57_37b	-1	model	missense	c.47	p.T16K	0.037	NULL	NULL	-	
LOC646360	646360	genome.wustl.edu	37	10	37626604	37626605	+	RNA	INS	-	-	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	37626604	37626605	-	A	INS	LOC646360	XR_078419	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.998:1.000	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	37	11	65272844	65272844	+	RNA	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65272844	65272844	G	C	SNP	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.011	-	-	-	no_errors
MALAT1	378938	genome.wustl.edu	37	11	65273176	65273176	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65273176	65273176	G	A	SNP	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.274	-	-	-	no_errors
MDM4	4194	genome.wustl.edu	37	1	204513770	204513770	+	Silent	SNP	T	T	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	204513770	204513770	T	G	SNP	MDM4	NM_002393	human	genbank	57_37b	+1	validated	silent	c.780	p.T260	0.788	NULL	superfamily_SWIB/MDM2 domain,HMMPfam_SWIB,PatternScan_ZF_RANBP2_1,superfamily_RING/U-box	-	no_errors
MTF2	22823	genome.wustl.edu	37	1	93594865	93594865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	93594865	93594865	G	C	SNP	MTF2	NM_007358	human	genbank	57_37b	+1	validated	missense	c.1020	p.K340N	1.000	NULL	HMMSmart_SM00333,superfamily_Tudor/PWWP/MBT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
PCDHA1	56147	genome.wustl.edu	37	5	140167371	140167371	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140167371	140167371	T	G	SNP	PCDHA1	NM_018900	human	genbank	57_37b	+1	reviewed	missense	c.1496	p.V499G	0.872	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PHLPP2	23035	genome.wustl.edu	37	16	71697861	71697862	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	CC	CC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71697861	71697862	CC	-	DEL	PHLPP2	NM_015020	human	genbank	57_37b	-1	validated	frame_shift_del	c.1926_1925	p.G642fs	0.959:1.000	superfamily_L domain-like,HMMSmart_SM00369	superfamily_PH domain-like,superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMSmart_SM00332,HMMPfam_PP2C	(deletion:cds_exon[71697802,71698002])	no_errors
PLD3	23646	genome.wustl.edu	37	19	40882650	40882650	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40882650	40882650	G	A	SNP	PLD3	NM_001031696	human	genbank	57_37b	+1	validated	missense	c.1154	p.R385H	0.982	HMMPfam_PLD_envelope,superfamily_SSF56024	superfamily_SSF56024,HMMPfam_PLDc,HMMSmart_PLDc,HMMPfam_PLD_envelope	-	no_errors
PPP1R9A	55607	genome.wustl.edu	37	7	94915619	94915619	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	94915619	94915619	A	C	SNP	PPP1R9A	NM_017650	human	genbank	57_37b	+1	validated	missense	c.2859	p.L953F	0.091	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
PRKDC	5591	genome.wustl.edu	37	8	48761994	48761994	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	48761994	48761994	T	G	SNP	PRKDC	ENST00000314191	human	ensembl	57_37b	-1	known	missense	c.7073	p.K2358T	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_NUC194,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
RASSF2	9770	genome.wustl.edu	37	20	4776604	4776604	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	4776604	4776604	G	A	SNP	RASSF2	NM_014737	human	genbank	57_37b	-1	reviewed	silent	c.144	p.D48	0.938	NULL	HMMSmart_RA,HMMPfam_RA	-	no_errors
RNF213	57674	genome.wustl.edu	37	17	78261805	78261805	+	Silent	SNP	A	G	G	rs7215243	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	78261805	78261805	A	G	SNP	RNF213	NM_020954	human	genbank	57_37b	+1	validated	silent	c.453	p.P151	0.000	NULL	NULL	-	
SFRS5	6430	genome.wustl.edu	37	14	70235927	70235927	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	70235927	70235927	C	T	SNP	SFRS5	NM_001039465	human	genbank	57_37b	+1	validated	missense	c.325	p.R109C	1.000	superfamily_RNA-binding domain RBD,HMMSmart_SM00360	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
SNX6	58533	genome.wustl.edu	37	14	35045013	35045013	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	35045013	35045013	G	C	SNP	SNX6	NM_152233	human	genbank	57_37b	-1	reviewed	silent	c.906	p.L302	1.000	HMMPfam_Vps5	superfamily_PX domain,HMMPfam_PX,HMMPfam_Vps5	-	no_errors
SRCAP	10847	genome.wustl.edu	37	16	30718895	30718895	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30718895	30718895	G	A	SNP	SRCAP	NM_006662	human	genbank	57_37b	+1	validated	silent	c.495	p.V165	0.980	HMMPfam_HSA,HMMSmart_SM00573	HMMPfam_HSA,HMMSmart_SM00573,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_AT_hook,HMMSmart_SM00384	-	no_errors
ST3GAL5	8869	genome.wustl.edu	37	2	86067596	86067596	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	86067596	86067596	G	A	SNP	ST3GAL5	ENST00000393803	human	ensembl	57_37b	-1	known	missense	c.43	p.R15C	0.006	NULL	HMMPfam_Glyco_transf_29	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64428284	64428284	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64428284	64428284	T	A	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	missense	c.829	p.Y277N	0.994	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
TFAP2A	7020	genome.wustl.edu	37	6	10398921	10398921	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	10398921	10398921	A	C	SNP	TFAP2A	NM_003220	human	genbank	57_37b	-1	reviewed	missense	c.1043	p.F348C	1.000	HMMPfam_TF_AP-2	HMMPfam_TF_AP-2	-	no_errors
TTLL4	9654	genome.wustl.edu	37	2	219617532	219617532	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219617532	219617532	G	A	SNP	TTLL4	NM_014640	human	genbank	57_37b	+1	validated	missense	c.3023	p.R1008Q	1.000	NULL	HMMPfam_TTL,superfamily_SSF56059	-	no_errors
UBE3C	9690	genome.wustl.edu	37	7	156979555	156979555	+	Missense_Mutation	SNP	A	A	G	rs62001021	byCluster	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	156979555	156979555	A	G	SNP	UBE3C	NM_014671	human	genbank	57_37b	+1	validated	missense	c.1171	p.I391V	0.985	NULL	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	
WDR69	164781	genome.wustl.edu	37	2	228769656	228769656	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JM-01A-21W-A071-09	TCGA-AO-A0JM-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	228769656	228769656	C	T	SNP	WDR69	NM_178821	human	genbank	57_37b	+1	provisional	silent	c.660	p.A220	0.886	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
