Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACSF3	197322	genome.wustl.edu	37	16	89180883	89180883	+	Missense_Mutation	SNP	G	A	A	rs3743979	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89180883	89180883	G	A	SNP	ACSF3	NM_001127214	human	genbank	57_37b	+1	validated	missense	c.1114	p.V372M	0.000	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	
ADAMTS6	11174	genome.wustl.edu	37	5	64748575	64748575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	64748575	64748575	G	A	SNP	ADAMTS6	NM_197941	human	genbank	57_37b	-1	reviewed	missense	c.802	p.R268C	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_PLAC"	-	no_errors
ADAMTSL1	92949	genome.wustl.edu	37	9	18777422	18777422	+	Silent	SNP	G	G	A	rs45579937	byCluster;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	18777422	18777422	G	A	SNP	ADAMTSL1	NM_001040272	human	genbank	57_37b	+1	validated	silent	c.3195	p.L1065	0.034	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMPfam_PLAC	-	
AMY2A	279	genome.wustl.edu	37	1	104162362	104162362	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	104162362	104162362	A	T	SNP	AMY2A	NM_000699	human	genbank	57_37b	+1	reviewed	missense	c.700	p.S234C	0.994	superfamily_Glyco_hydro_cat,HMMPfam_Alpha-amylase,HMMSmart_Aamy	superfamily_Glyco_hydro_cat,HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_SSF51011,HMMSmart_Aamy_C,HMMPfam_Alpha-amylase_C	-	no_errors
ANGPT2	285	genome.wustl.edu	37	8	6420368	6420368	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	6420368	6420368	C	G	SNP	ANGPT2	NM_001147	human	genbank	57_37b	-1	reviewed	missense	c.88	p.G30R	0.980	NULL	HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
CAND2	23066	genome.wustl.edu	37	3	12858028	12858028	+	Missense_Mutation	SNP	T	T	C	rs3732675	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	12858028	12858028	T	C	SNP	CAND2	NM_012298	human	genbank	57_37b	+1	validated	missense	c.1318	p.S440P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_TIP120	-	
CHST2	9435	genome.wustl.edu	37	3	142840933	142840933	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142840933	142840933	C	T	SNP	CHST2	NM_004267	human	genbank	57_37b	+1	validated	silent	c.1275	p.Y425	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Sulfotransfer_1	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67644796	67644799	+	Frame_Shift_Del	DEL	GAGA	GAGA	-	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	GAGA	GAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67644796	67644799	GAGA	-	DEL	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.61_64	p.K23fs	1.000:1.000:1.000:1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	(deletion:cds_exon[67644736,67645516])	no_errors
DLAT	1737	genome.wustl.edu	37	11	111896324	111896324	+	Missense_Mutation	SNP	C	C	T	rs2303436	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	111896324	111896324	C	T	SNP	DLAT	NM_001931	human	genbank	57_37b	+1	reviewed	missense	c.128	p.A43V	0.001	NULL	superfamily_Single hybrid motif,HMMPfam_Biotin_lipoyl,PatternScan_LIPOYL,PatternScan_AA_TRNA_LIGASE_I,superfamily_Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex,HMMPfam_E3_binding,HMMPfam_2-oxoacid_dh,superfamily_CoA-dependent acyltransferases	-	
DNM3	26052	genome.wustl.edu	37	1	171958092	171958092	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171958092	171958092	T	A	SNP	DNM3	NM_015569	human	genbank	57_37b	+1	validated	missense	c.393	p.N131K	1.000	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N	HMMSmart_DYNc,superfamily_SSF52540,HMMPfam_Dynamin_N,PatternScan_DYNAMIN,HMMPfam_Dynamin_M,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED	-	no_errors
ENSG00000229292	0	genome.wustl.edu	37	19	56284386	56284386	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56284386	56284386	G	T	SNP	ENSG00000229292	ENST00000341750	human	ensembl	57_37b	+1	known	silent	c.705	p.G235	0.000	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_RING/U-box,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
ENSG00000245520	0	genome.wustl.edu	37	1	16956555	16956555	+	RNA	SNP	C	C	T	rs9329440	byCluster;byFrequency;by2Hit2Allele	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16956555	16956555	C	T	SNP	ENSG00000245520	ENST00000376847	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.995	-	-	-	
ENSG00000245549	0	genome.wustl.edu	37	1	16950880	16950880	+	RNA	SNP	T	T	C	rs1629127	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950880	16950880	T	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.238	-	-	-	
ENSG00000246115	0	genome.wustl.edu	37	17	56429585	56429585	+	RNA	SNP	C	C	G	rs75924914	byCluster;byFrequency;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	56429585	56429585	C	G	SNP	ENSG00000246115	ENST00000501248	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247772	0	genome.wustl.edu	37	11	47378911	47378912	+	RNA	INS	-	-	ACAC	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47378911	47378912	-	ACAC	INS	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.694:0.700	-	-	-	no_errors
FCRLB	127943	genome.wustl.edu	37	1	161697072	161697072	+	Missense_Mutation	SNP	G	G	C	rs72704099	byCluster;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161697072	161697072	G	C	SNP	FCRLB	NM_001002901	human	genbank	57_37b	+1	validated	missense	c.901	p.A301P	0.001	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409	-	
GFPT2	9945	genome.wustl.edu	37	5	179740867	179740867	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	179740867	179740867	G	A	SNP	GFPT2	NM_005110	human	genbank	57_37b	-1	provisional	silent	c.1371	p.R457	0.004	superfamily_SSF53697,HMMPfam_SIS	HMMPfam_GATase_2,superfamily_SSF56235,superfamily_SSF53697,HMMPfam_SIS	-	no_errors
GGT3P	2679	genome.wustl.edu	37	22	18769203	18769203	+	RNA	SNP	G	G	A	rs111245818	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	18769203	18769203	G	A	SNP	GGT3P	NR_003267	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.149	-	-	-	
GUCY2C	2984	genome.wustl.edu	37	12	14825805	14825805	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	14825805	14825805	A	C	SNP	GUCY2C	NM_004963	human	genbank	57_37b	-1	validated	splice_site	c.1170+2	e9+2	1.000	-	-	-	no_errors
IGFN1	91156	genome.wustl.edu	37	1	201190732	201190732	+	Missense_Mutation	SNP	G	A	A	rs3738269	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201190732	201190732	G	A	SNP	IGFN1	ENST00000412892	human	ensembl	57_37b	+1	known	missense	c.2311	p.G771R	0.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	
ITPKB	3707	genome.wustl.edu	37	1	226924642	226924642	+	Missense_Mutation	SNP	C	C	T	rs3754415	byCluster;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226924642	226924642	C	T	SNP	ITPKB	NM_002221	human	genbank	57_37b	-1	reviewed	missense	c.518	p.R173H	1.000	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	
LATS2	26524	genome.wustl.edu	37	13	21562832	21562832	+	Missense_Mutation	SNP	C	C	T	rs2770928	byCluster;byFrequency;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	21562832	21562832	C	T	SNP	LATS2	NM_014572	human	genbank	57_37b	-1	reviewed	missense	c.1087	p.G363S	0.003	NULL	HMMPfam_UBA,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	
LIMA1	51474	genome.wustl.edu	37	12	50616076	50616076	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	50616076	50616076	G	T	SNP	LIMA1	NM_001113546	human	genbank	57_37b	-1	validated	missense	c.358	p.Q120K	0.006	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
LOC100130667	0	genome.wustl.edu	37	1	120165826	120165826	+	Missense_Mutation	SNP	C	C	T	rs12076924	byCluster;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	120165826	120165826	C	T	SNP	LOC100130667	XM_001715213	human	genbank	57_37b	+1	model	missense	c.907	p.R303W	0.996	NULL	NULL	-	
LOC284900	0	genome.wustl.edu	37	22	28397591	28397591	+	RNA	SNP	G	G	T	rs138654	byCluster;byFrequency;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	28397591	28397591	G	T	SNP	LOC284900	NR_026963	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	
MTNR1B	4544	genome.wustl.edu	37	11	92715124	92715124	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92715124	92715124	C	T	SNP	MTNR1B	NM_005959	human	genbank	57_37b	+1	reviewed	silent	c.735	p.S245	0.014	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MUC6	4588	genome.wustl.edu	37	11	1027811	1027811	+	Missense_Mutation	SNP	C	C	T	rs7481521	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1027811	1027811	C	T	SNP	MUC6	NM_005961	human	genbank	57_37b	-1	validated	missense	c.1855	p.V619M	0.860	HMMPfam_C8	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00215,HMMSmart_SM00041	-	
NNT	23530	genome.wustl.edu	37	5	43616033	43616033	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43616033	43616033	T	G	SNP	NNT	NM_012343	human	genbank	57_37b	+1	reviewed	missense	c.465	p.I155M	1.000	superfamily_SSF52283,HMMPfam_AlaDh_PNT_N	superfamily_SSF52283,PatternScan_ALADH_PNT_1,HMMPfam_AlaDh_PNT_N,superfamily_NAD(P)-bd,HMMPfam_AlaDh_PNT_C,PatternScan_ALADH_PNT_2,HMMPfam_PNTB,superfamily_SSF52467	-	no_errors
NUAK2	81788	genome.wustl.edu	37	1	205273100	205273100	+	Silent	SNP	G	A	A	rs56091501	byCluster;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	205273100	205273100	G	A	SNP	NUAK2	NM_030952	human	genbank	57_37b	-1	provisional	silent	c.1365	p.R455	0.943	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	
OSBPL8	114882	genome.wustl.edu	37	12	76786476	76786476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	76786476	76786476	G	A	SNP	OSBPL8	NM_020841	human	genbank	57_37b	-1	reviewed	missense	c.814	p.R272C	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
PAQR9	344838	genome.wustl.edu	37	3	142681430	142681430	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142681430	142681430	G	A	SNP	PAQR9	NM_198504	human	genbank	57_37b	-1	validated	missense	c.749	p.P250L	1.000	HMMPfam_HlyIII	HMMPfam_HlyIII	-	no_errors
PAX7	5081	genome.wustl.edu	37	1	19027239	19027239	+	Silent	SNP	A	A	G	rs2743201	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19027239	19027239	A	G	SNP	PAX7	NM_002584	human	genbank	57_37b	+1	reviewed	silent	c.879	p.P293	0.022	NULL	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	
PCDHA12	56137	genome.wustl.edu	37	5	140256980	140256980	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140256980	140256980	C	T	SNP	PCDHA12	NM_018903	human	genbank	57_37b	+1	reviewed	silent	c.1923	p.D641	0.001	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PKD1	5310	genome.wustl.edu	37	16	2144180	2144180	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2144180	2144180	G	C	SNP	PKD1	NM_001009944	human	genbank	57_37b	-1	reviewed	missense	c.10531	p.L3511V	0.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT,HMMSmart_SM00321,HMMPfam_WSC,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PKD,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,HMMPfam_REJ,HMMPfam_GPS,HMMSmart_SM00303,HMMSmart_SM00308,HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
PLEKHG5	57449	genome.wustl.edu	37	1	6528468	6528468	+	Missense_Mutation	SNP	C	C	T	rs76625876	byCluster;byFrequency;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	6528468	6528468	C	T	SNP	PLEKHG5	NM_198681	human	genbank	57_37b	-1	reviewed	missense	c.2659	p.G887S	0.147	NULL	superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,HMMPfam_PH,superfamily_SSF50729,HMMSmart_PH	-	
PRKCQ	5588	genome.wustl.edu	37	10	6470185	6470185	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	6470185	6470185	T	C	SNP	PRKCQ	NM_006257	human	genbank	57_37b	-1	reviewed	missense	c.2105	p.E702G	0.980	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
PSMD12	5718	genome.wustl.edu	37	17	65362552	65362552	+	Silent	SNP	T	T	A	rs11079691	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	65362552	65362552	T	A	SNP	PSMD12	NM_002816	human	genbank	57_37b	-1	reviewed	silent	c.84	p.L28	1.000	NULL	HMMPfam_PCI,superfamily_SSF46785,HMMSmart_PINT	-	
PTGFRN	5738	genome.wustl.edu	37	1	117452869	117452869	+	Missense_Mutation	SNP	C	G	G	rs77292583	byCluster;byFrequency;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117452869	117452869	C	G	SNP	PTGFRN	NM_020440	human	genbank	57_37b	+1	provisional	missense	c.44	p.S15W	0.099	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_ig	-	
PTPN14	5784	genome.wustl.edu	37	1	214543010	214543010	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214543010	214543010	G	A	SNP	PTPN14	NM_005401	human	genbank	57_37b	-1	reviewed	nonsense	c.3061	p.R1021*	1.000	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RFPL4A	342931	genome.wustl.edu	37	19	56274382	56274382	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56274382	56274382	G	T	SNP	RFPL4A	NM_001145014	human	genbank	57_37b	+1	validated	silent	c.705	p.G235	0.001	HMMPfam_SPRY,HMMSmart_SPRY	superfamily_SSF57850,HMMSmart_PRY,HMMPfam_SPRY,HMMSmart_SPRY	-	no_errors
SPATA7	55812	genome.wustl.edu	37	14	88852166	88852166	+	Missense_Mutation	SNP	G	A	A	rs4904448	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	88852166	88852166	G	A	SNP	SPATA7	NM_018418	human	genbank	57_37b	+1	validated	missense	c.4	p.D2N	0.991	NULL	NULL	-	
TMEM17	200728	genome.wustl.edu	37	2	62733253	62733253	+	Silent	SNP	C	C	T	rs11676567	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	62733253	62733253	C	T	SNP	TMEM17	NM_198276	human	genbank	57_37b	-1	validated	silent	c.12	p.P4	0.973	NULL	HMMPfam_Transmemb_17	-	
TRHDE	29953	genome.wustl.edu	37	12	72956810	72956810	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	72956810	72956810	C	T	SNP	TRHDE	NM_013381	human	genbank	57_37b	+1	reviewed	nonsense	c.1897	p.Q633*	0.925	NULL	superfamily_SSF63737,HMMPfam_Peptidase_M1,superfamily_SSF55486,PatternScan_ZINC_PROTEASE	-	no_errors
TRPC4	7223	genome.wustl.edu	37	13	38357162	38357162	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	38357162	38357162	A	G	SNP	TRPC4	NM_003306	human	genbank	57_37b	-1	validated	silent	c.309	p.A103	0.418	superfamily_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors
TRPV4	59341	genome.wustl.edu	37	12	110246264	110246264	+	Silent	SNP	C	C	T	rs114101785	byCluster;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	110246264	110246264	C	T	SNP	TRPV4	NM_021625	human	genbank	57_37b	-1	reviewed	silent	c.396	p.P132	0.018	superfamily_Ankyrin repeat	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	
USP32	84669	genome.wustl.edu	37	17	58260550	58260550	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	58260550	58260550	C	T	SNP	USP32	NM_032582	human	genbank	57_37b	-1	validated	missense	c.4099	p.A1367T	0.787	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ZACN	353174	genome.wustl.edu	37	17	74076642	74076642	+	Silent	SNP	G	A	A	rs2257028	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	74076642	74076642	G	A	SNP	ZACN	ENST00000422902	human	ensembl	57_37b	+1	known	silent	c.681	p.R227	0.039	NULL	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	
