Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AEBP1	165	genome.wustl.edu	37	7	44151594	44151594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44151594	44151594	G	A	SNP	AEBP1	NM_001129	human	genbank	57_37b	+1	reviewed	missense	c.1982	p.R661H	1.000	superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14	superfamily_Galactose-binding domain-like,HMMSmart_SM00231,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Zn-dependent exopeptidases,HMMSmart_SM00631,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Carboxypeptidase regulatory domain	-	no_errors
AMAC1L1	646000	genome.wustl.edu	37	18	11609808	11609808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	11609808	11609808	C	A	SNP	AMAC1L1	XM_928960	human	genbank	57_37b	+1	model	missense	c.214	p.L72M	0.999	HMMPfam_DUF6	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
AURKA	6790	genome.wustl.edu	37	20	54961390	54961390	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	54961390	54961390	G	A	SNP	AURKA	NM_003600	human	genbank	57_37b	-1	reviewed	missense	c.242	p.A81V	0.011	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
AXL	558	genome.wustl.edu	37	19	41743883	41743883	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41743883	41743883	C	T	SNP	AXL	NM_021913	human	genbank	57_37b	+1	reviewed	missense	c.818	p.A273V	0.194	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
C10orf122	387718	genome.wustl.edu	37	10	127350434	127350434	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127350434	127350434	A	G	SNP	C10orf122	NM_001128202	human	genbank	57_37b	-1	validated	missense	c.164	p.I55T	0.945	NULL	NULL	-	no_errors
C2orf34	79823	genome.wustl.edu	37	2	44993576	44993576	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44993576	44993576	C	T	SNP	C2orf34	NM_024766	human	genbank	57_37b	+1	validated	missense	c.770	p.A257V	1.000	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_16,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
C5	727	genome.wustl.edu	37	9	123778623	123778623	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	123778623	123778623	C	T	SNP	C5	NM_001735	human	genbank	57_37b	-1	reviewed	silent	c.1905	p.G635	0.993	NULL	PatternScan_ALPHA_2_MACROGLOBULIN,HMMPfam_A2M_N,HMMPfam_A2M_N_2,superfamily_Anaphylatoxin,HMMPfam_ANATO,HMMSmart_ANATO,PatternScan_ANAPHYLATOXIN_1,HMMPfam_A2M,superfamily_Terp_cyc_toroid,HMMPfam_A2M_comp,superfamily_AM_receptor_bind,HMMPfam_A2M_recep,HMMSmart_C345C,HMMPfam_NTR	-	no_errors
CD163L1	283316	genome.wustl.edu	37	12	7556322	7556322	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7556322	7556322	A	C	SNP	CD163L1	NM_174941	human	genbank	57_37b	-1	reviewed	missense	c.1217	p.V406G	1.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
CNTNAP4	85445	genome.wustl.edu	37	16	76501400	76501400	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	76501400	76501400	C	G	SNP	CNTNAP4	NM_138994	human	genbank	57_37b	+1	validated	missense	c.1416	p.D472E	0.957	superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
CSTF2T	23283	genome.wustl.edu	37	10	53458363	53458363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	53458363	53458363	C	T	SNP	CSTF2T	NM_015235	human	genbank	57_37b	-1	validated	missense	c.947	p.R316H	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
DNAH9	1770	genome.wustl.edu	37	17	11809059	11809059	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11809059	11809059	A	C	SNP	DNAH9	NM_001372	human	genbank	57_37b	+1	reviewed	silent	c.11682	p.G3894	0.994	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin repeat,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2	-	no_errors
DOPEY1	23033	genome.wustl.edu	37	6	83872606	83872606	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	83872606	83872606	C	T	SNP	DOPEY1	NM_015018	human	genbank	57_37b	+1	validated	nonsense	c.7060	p.R2354*	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
DULLARD	23399	genome.wustl.edu	37	17	7154534	7154534	+	Silent	SNP	G	A	A	rs414206	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7154534	7154534	G	A	SNP	DULLARD	NM_001143775	human	genbank	57_37b	-1	validated	silent	c.82	p.L28	1.000	NULL	superfamily_HAD-like,HMMPfam_NIF,HMMSmart_SM00577	-	
ENSG00000247772	0	genome.wustl.edu	37	11	47378911	47378912	+	RNA	INS	-	-	ACAC	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47378911	47378912	-	ACAC	INS	ENSG00000247772	ENST00000499849	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.694:0.700	-	-	-	no_errors
FAM71E2	284418	genome.wustl.edu	37	19	55871057	55871057	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	55871057	55871057	C	G	SNP	FAM71E2	NM_001145402	human	genbank	57_37b	-1	predicted	silent	c.1179	p.G393	0.000	NULL	NULL	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92087880	92087880	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92087880	92087880	T	A	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.2602	p.Y868N	0.998	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
FSD2	123722	genome.wustl.edu	37	15	83451757	83451759	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	83451757	83451759	TTC	-	DEL	FSD2	NM_001007122	human	genbank	57_37b	-1	provisional	in_frame_del	c.756_754	p.E252in_frame_del	1.000:1.000:1.000	NULL	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_SPRY	(deletion:cds_exon[83451547,83451777])	no_errors
FYCO1	79443	genome.wustl.edu	37	3	46010138	46010138	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	46010138	46010138	C	-	DEL	FYCO1	NM_024513	human	genbank	57_37b	-1	validated	frame_shift_del	c.688	p.E230fs	1.000	NULL	superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,superfamily_Supernatant protein factor (SPF) C-terminal domain	(deletion:cds_exon[46007769,46010195])	no_errors
GABRA5	2558	genome.wustl.edu	37	15	27114436	27114436	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	27114436	27114436	A	T	SNP	GABRA5	NM_000810	human	genbank	57_37b	+1	reviewed	missense	c.41	p.N14I	1.000	NULL	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115746	8115746	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115746	8115746	A	T	SNP	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	missense	c.1095	p.R365S	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain)	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115874	8115875	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115874	8115875	-	G	INS	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1223_1224	p.P409fs	0.903:0.359	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,HMMPfam_GATA	-	no_errors
GRM4	2914	genome.wustl.edu	37	6	34026938	34026938	+	Silent	SNP	C	T	T	rs2451359	byCluster;byHapMap;by1000genomes	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	34026938	34026938	C	T	SNP	GRM4	ENST00000455714	human	ensembl	57_37b	-1	known	silent	c.57	p.T19	0.988	NULL	superfamily_SSF53822	-	
GRXCR2	0	genome.wustl.edu	37	5	145252330	145252330	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	145252330	145252330	C	T	SNP	GRXCR2	NM_001080516	human	genbank	57_37b	-1	provisional	missense	c.202	p.G68R	1.000	NULL	NULL	-	no_errors
HIPK2	28996	genome.wustl.edu	37	7	139297952	139297952	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	139297952	139297952	G	C	SNP	HIPK2	ENST00000263551	human	ensembl	57_37b	-1	known	missense	c.2108	p.A703G	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
HTN3	3347	genome.wustl.edu	37	4	70898889	70898889	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	70898889	70898889	G	A	SNP	HTN3	NM_000200	human	genbank	57_37b	+1	reviewed	silent	c.108	p.K36	0.000	NULL	NULL	-	no_errors
IL13RA2	3598	genome.wustl.edu	37	X	114242577	114242577	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	114242577	114242577	G	A	SNP	IL13RA2	NM_000640	human	genbank	57_37b	-1	reviewed	silent	c.915	p.C305	0.940	superfamily_FN_III-like	superfamily_FN_III-like,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
IMPDH1	3614	genome.wustl.edu	37	7	128041163	128041163	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128041163	128041163	G	T	SNP	IMPDH1	NM_000883	human	genbank	57_37b	-1	reviewed	missense	c.410	p.T137N	1.000	superfamily_SSF51412,HMMPfam_IMPDH	superfamily_SSF51412,HMMPfam_IMPDH,superfamily_SSF54631,HMMPfam_CBS,HMMSmart_CBS,PatternScan_IMP_DH_GMP_RED	-	no_errors
KDM2A	22992	genome.wustl.edu	37	11	67021891	67021891	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67021891	67021891	T	G	SNP	KDM2A	NM_012308	human	genbank	57_37b	+1	reviewed	splice_site	c.3307+2	e19+2	0.999	-	-	-	no_errors
KDM5A	5927	genome.wustl.edu	37	12	465641	465641	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	465641	465641	C	T	SNP	KDM5A	NM_001042603	human	genbank	57_37b	-1	reviewed	silent	c.735	p.G245	0.935	NULL	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	-	no_errors
KIAA1549	57670	genome.wustl.edu	37	7	138602615	138602615	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	138602615	138602615	G	A	SNP	KIAA1549	NM_020910	human	genbank	57_37b	-1	validated	missense	c.1607	p.P536L	0.000	NULL	PatternScan_HTH_LUXR_1	-	no_errors
LOC100293737	0	genome.wustl.edu	37	11	3113596	3113596	+	Silent	SNP	C	C	T	rs113239327	by1000genomes	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3113596	3113596	C	T	SNP	LOC100293737	XM_002344574	human	genbank	57_37b	-1	model	silent	c.222	p.S74	0.000	NULL	NULL	-	
LOC647013	0	genome.wustl.edu	37	9	37477685	37477685	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	37477685	37477685	G	A	SNP	LOC647013	XM_001726034	human	genbank	57_37b	+1	model	silent	c.540	p.L180	0.053	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	-	no_errors
MC3R	4159	genome.wustl.edu	37	20	54823848	54823848	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	54823848	54823848	C	A	SNP	MC3R	ENST00000371389	human	ensembl	57_37b	+1	known	missense	c.60	p.S20R	0.071	NULL	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MRPL23	6150	genome.wustl.edu	37	11	1977552	1977552	+	Missense_Mutation	SNP	G	A	A	rs12812	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1977552	1977552	G	A	SNP	MRPL23	NM_021134	human	genbank	57_37b	+1	reviewed	missense	c.364	p.A122T	0.000	NULL	superfamily_L23_L15e_core,HMMPfam_Ribosomal_L23	-	
NLRP4	147945	genome.wustl.edu	37	19	56369409	56369409	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56369409	56369409	C	T	SNP	NLRP4	NM_134444	human	genbank	57_37b	+1	validated	missense	c.650	p.T217I	0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
OLFML1	283298	genome.wustl.edu	37	11	7530894	7530894	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	7530894	7530894	T	C	SNP	OLFML1	NM_198474	human	genbank	57_37b	+1	validated	silent	c.684	p.H228	0.339	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
OR2AK2	391191	genome.wustl.edu	37	1	248128766	248128766	+	Missense_Mutation	SNP	G	G	A	rs113103144	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248128766	248128766	G	A	SNP	OR2AK2	NM_001004491	human	genbank	57_37b	+1	provisional	missense	c.133	p.V45I	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	
OSBPL3	26031	genome.wustl.edu	37	7	24902870	24902870	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	24902870	24902870	G	T	SNP	OSBPL3	NM_015550	human	genbank	57_37b	-1	reviewed	missense	c.819	p.H273Q	0.993	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
OTOP2	92736	genome.wustl.edu	37	17	72927091	72927091	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72927091	72927091	T	C	SNP	OTOP2	NM_178160	human	genbank	57_37b	+1	provisional	missense	c.1361	p.L454P	1.000	NULL	HMMPfam_DUF270	-	no_errors
PI4KB	5298	genome.wustl.edu	37	1	151265399	151265399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151265399	151265399	C	T	SNP	PI4KB	NM_002651	human	genbank	57_37b	-1	provisional	missense	c.2416	p.D806N	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00146	superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLXNA1	5361	genome.wustl.edu	37	3	126739137	126739137	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	126739137	126739137	C	T	SNP	PLXNA1	NM_032242	human	genbank	57_37b	+1	validated	missense	c.3919	p.R1307W	1.000	HMMPfam_Plexin_cytopl	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
PPP1R3A	5506	genome.wustl.edu	37	7	113520082	113520082	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	113520082	113520082	C	A	SNP	PPP1R3A	NM_002711	human	genbank	57_37b	-1	reviewed	silent	c.1065	p.G355	0.009	NULL	HMMPfam_CBM_21	-	no_errors
PPP2R5C	5527	genome.wustl.edu	37	14	102384167	102384167	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	102384167	102384167	G	A	SNP	PPP2R5C	NM_002719	human	genbank	57_37b	+1	reviewed	splice_site	c.1327-1	e13-1	1.000	-	-	-	no_errors
PRMT6	55170	genome.wustl.edu	37	1	107600277	107600277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	107600277	107600277	C	T	SNP	PRMT6	NM_018137	human	genbank	57_37b	+1	validated	missense	c.763	p.P255S	0.870	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_Methyltransf_11	-	no_errors
RGPD3	653489	genome.wustl.edu	37	2	107041612	107041612	+	Missense_Mutation	SNP	A	A	C	rs3974037	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	107041612	107041612	A	C	SNP	RGPD3	NM_001144013	human	genbank	57_37b	-1	provisional	missense	c.2811	p.S937R	0.162	NULL	superfamily_SSF48452,HMMPfam_TPR_1,superfamily_SSF50729,HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_GRIP,HMMSmart_Grip	-	
SEC14L4	284904	genome.wustl.edu	37	22	30891919	30891919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	30891919	30891919	C	T	SNP	SEC14L4	NM_174977	human	genbank	57_37b	-1	reviewed	missense	c.170	p.R57Q	1.000	superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N	superfamily_CRAL/TRIO N-terminal domain,HMMPfam_CRAL_TRIO_N,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_CRAL_TRIO,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
SENP7	57337	genome.wustl.edu	37	3	101136588	101136588	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	101136588	101136588	G	C	SNP	SENP7	NM_020654	human	genbank	57_37b	-1	validated	missense	c.331	p.R111G	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_Peptidase_C48	-	no_errors
SLC7A13	157724	genome.wustl.edu	37	8	87242353	87242353	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	87242353	87242353	C	T	SNP	SLC7A13	NM_138817	human	genbank	57_37b	-1	validated	missense	c.154	p.V52I	0.000	NULL	HMMPfam_AA_permease	-	no_errors
SSTR4	6754	genome.wustl.edu	37	20	23016492	23016492	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	23016492	23016492	C	T	SNP	SSTR4	NM_001052	human	genbank	57_37b	+1	validated	silent	c.372	p.S124	0.993	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
THSD7B	80731	genome.wustl.edu	37	2	138169282	138169282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	138169282	138169282	C	A	SNP	THSD7B	NM_001080427	human	genbank	57_37b	+1	provisional	missense	c.2706	p.N902K	0.991	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578403	7578403	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578403	7578403	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.527	p.C176F	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215844346	215844346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215844346	215844346	C	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.14101	p.E4701K	0.000	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
WDR24	84219	genome.wustl.edu	37	16	737628	737628	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	737628	737628	C	T	SNP	WDR24	NM_032259	human	genbank	57_37b	-1	provisional	missense	c.593	p.R198Q	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WDR75	84128	genome.wustl.edu	37	2	190332305	190332305	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190332305	190332305	T	C	SNP	WDR75	NM_032168	human	genbank	57_37b	+1	provisional	missense	c.1559	p.I520T	0.995	superfamily_WD40_like,HMMSmart_WD40	PatternScan_WD_REPEATS_1,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	-	no_errors
ZBTB38	253461	genome.wustl.edu	37	3	141163018	141163018	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	141163018	141163018	T	C	SNP	ZBTB38	NM_001080412	human	genbank	57_37b	+1	validated	silent	c.1788	p.N596	0.000	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
ZFP37	7539	genome.wustl.edu	37	9	115806423	115806423	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	115806423	115806423	T	C	SNP	ZFP37	NM_003408	human	genbank	57_37b	-1	provisional	missense	c.475	p.K159E	0.073	NULL	HMMSmart_KRAB,HMMPfam_KRAB,superfamily_Krueppel-associated_box,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF233	353355	genome.wustl.edu	37	19	44770438	44770438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44770438	44770438	G	A	SNP	ZNF233	NM_181756	human	genbank	57_37b	+1	provisional	missense	c.103	p.D35N	0.001	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF598	90850	genome.wustl.edu	37	16	2049640	2049640	+	Missense_Mutation	SNP	A	A	G	rs2286469	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2049640	2049640	A	G	SNP	ZNF598	ENST00000431526	human	ensembl	57_37b	-1	known	missense	c.1910	p.M637T	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF823	55552	genome.wustl.edu	37	19	11834071	11834071	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U2-01A-11D-A10G-09	TCGA-AR-A0U2-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11834071	11834071	G	T	SNP	ZNF823	NM_001080493	human	genbank	57_37b	-1	validated	missense	c.278	p.P93H	0.041	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
