Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADCK4	79934	genome.wustl.edu	37	19	41211056	41211056	+	Missense_Mutation	SNP	T	C	C	rs3865452	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	41211056	41211056	T	C	SNP	ADCK4	NM_024876	human	genbank	57_37b	-1	validated	missense	c.521	p.H174R	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_ABC1	-	
AGPAT2	10555	genome.wustl.edu	37	9	139571560	139571560	+	Silent	SNP	G	G	A	rs73668354	byCluster	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	139571560	139571560	G	A	SNP	AGPAT2	NM_006412	human	genbank	57_37b	-1	reviewed	silent	c.345	p.C115	0.945	superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMPfam_Acyltransferase,HMMSmart_SM00563	superfamily_Glycerol-3-phosphate (1)-acyltransferase,HMMPfam_Acyltransferase,HMMSmart_SM00563	-	
ALOXE3	59344	genome.wustl.edu	37	17	8011882	8011882	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8011882	8011882	A	C	SNP	ALOXE3	NM_021628	human	genbank	57_37b	-1	reviewed	missense	c.1588	p.Y530D	1.000	superfamily_Lipoxygenase,HMMPfam_Lipoxygenase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors
AMHR2	269	genome.wustl.edu	37	12	53819568	53819568	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	53819568	53819568	G	T	SNP	AMHR2	NM_020547	human	genbank	57_37b	+1	reviewed	missense	c.717	p.Q239H	0.999	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Snake toxin-like,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220	-	no_errors
AP3B1	8546	genome.wustl.edu	37	5	77523987	77523987	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	77523987	77523987	G	C	SNP	AP3B1	NM_003664	human	genbank	57_37b	-1	reviewed	missense	c.356	p.T119S	1.000	HMMPfam_Adaptin_N,superfamily_ARM repeat	HMMPfam_Adaptin_N,superfamily_ARM repeat	-	no_errors
ARID3B	10620	genome.wustl.edu	37	15	74883640	74883641	+	In_Frame_Ins	INS	-	-	CTGCTG	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74883640	74883641	-	CTGCTG	INS	ARID3B	NM_006465	human	genbank	57_37b	+1	reviewed	in_frame_ins	c.1030_1031	p.348in_frame_insAA	0.000:0.012	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
ATP11C	286410	genome.wustl.edu	37	X	138845570	138845570	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	138845570	138845570	C	A	SNP	ATP11C	NM_173694	human	genbank	57_37b	-1	validated	missense	c.2408	p.R803I	1.000	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
AZFP	0	genome.wustl.edu	37	2	133090252	133090252	+	RNA	SNP	G	G	A	rs77957424	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	133090252	133090252	G	A	SNP	AZFP	XR_078264	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.001	-	-	-	
BHMT	635	genome.wustl.edu	37	5	78415130	78415130	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	78415130	78415130	A	C	SNP	BHMT	NM_001713	human	genbank	57_37b	+1	reviewed	missense	c.215	p.Q72P	1.000	superfamily_S_methyl_trans,HMMPfam_S-methyl_trans	superfamily_S_methyl_trans,HMMPfam_S-methyl_trans	-	no_errors
C14orf49	161176	genome.wustl.edu	37	14	95884323	95884323	+	Missense_Mutation	SNP	G	G	A	rs12434757	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	95884323	95884323	G	A	SNP	C14orf49	NM_152592	human	genbank	57_37b	-1	validated	missense	c.2768	p.A923V	0.996	HMMPfam_KASH	HMMSmart_SM00150,superfamily_Spectrin repeat,HMMPfam_KASH	-	
C16orf71	146562	genome.wustl.edu	37	16	4796393	4796393	+	Missense_Mutation	SNP	A	A	G	rs737700	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4796393	4796393	A	G	SNP	C16orf71	NM_139170	human	genbank	57_37b	+1	validated	missense	c.1061	p.Q354R	0.000	NULL	NULL	-	
C19orf46	163183	genome.wustl.edu	37	19	36497373	36497373	+	Silent	SNP	A	G	G	rs2285423	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36497373	36497373	A	G	SNP	C19orf46	NM_001039876	human	genbank	57_37b	-1	validated	silent	c.819	p.C273	0.986	NULL	HMMPfam_KASH	-	
CACNA1H	8912	genome.wustl.edu	37	16	1268494	1268494	+	Silent	SNP	C	C	T	rs2745136	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1268494	1268494	C	T	SNP	CACNA1H	NM_021098	human	genbank	57_37b	+1	reviewed	silent	c.5730	p.D1910	0.000	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	
CBLC	23624	genome.wustl.edu	37	19	45284548	45284550	+	In_Frame_Del	DEL	CAC	CAC	-	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	CAC	CAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45284548	45284550	CAC	-	DEL	CBLC	NM_012116	human	genbank	57_37b	+1	validated	in_frame_del	c.585_587	p.T197in_frame_del	0.996:1.000:1.000	HMMPfam_Cbl_N2,superfamily_EF-hand	HMMPfam_Cbl_N,superfamily_N-terminal domain of cbl (N-cbl),HMMPfam_Cbl_N2,superfamily_EF-hand,HMMPfam_Cbl_N3,superfamily_SH2 domain,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	(deletion:cds_exon[45284464,45284620])	no_errors
CELA1	1990	genome.wustl.edu	37	12	51736375	51736375	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	51736375	51736375	C	T	SNP	CELA1	NM_001971	human	genbank	57_37b	-1	reviewed	missense	c.310	p.D104N	0.964	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CENPL	91687	genome.wustl.edu	37	1	173780350	173780350	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173780350	173780350	G	A	SNP	CENPL	NM_001127181	human	genbank	57_37b	-1	validated	nonsense	c.88	p.R30*	0.973	NULL	NULL	-	no_errors
CG030	0	genome.wustl.edu	37	13	33078836	33078836	+	RNA	SNP	T	C	C	rs207630	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	33078836	33078836	T	C	SNP	CG030	NR_026928	human	genbank	57_37b	-1	validated	rna	NULL	NULL	0.002	-	-	-	
CROCCL1	84809	genome.wustl.edu	37	1	16952920	16952920	+	RNA	SNP	G	G	A	rs1759175	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16952920	16952920	G	A	SNP	CROCCL1	NR_026752	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-	
DENND2C	163259	genome.wustl.edu	37	1	115168327	115168327	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115168327	115168327	A	G	SNP	DENND2C	NM_198459	human	genbank	57_37b	-1	validated	silent	c.279	p.S93	0.805	NULL	HMMPfam_uDENN,HMMSmart_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN	-	no_errors
DENND4B	9909	genome.wustl.edu	37	1	153912954	153912954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153912954	153912954	C	T	SNP	DENND4B	NM_014856	human	genbank	57_37b	-1	validated	silent	c.1455	p.P485	0.008	HMMPfam_DENN,HMMSmart_DENN	HMMSmart_uDENN,HMMPfam_uDENN,HMMPfam_DENN,HMMSmart_DENN,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_PPR	-	no_errors
DNAJC30	84277	genome.wustl.edu	37	7	73097713	73097713	+	Missense_Mutation	SNP	G	G	A	rs61751896	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	73097713	73097713	G	A	SNP	DNAJC30	NM_032317	human	genbank	57_37b	-1	reviewed	missense	c.41	p.P14L	0.000	NULL	PatternScan_DNAJ_1,superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ	-	
ELF3	1999	genome.wustl.edu	37	1	201981774	201981774	+	Missense_Mutation	SNP	G	G	A	rs55729978	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201981774	201981774	G	A	SNP	ELF3	NM_001114309	human	genbank	57_37b	+1	validated	missense	c.485	p.G162D	0.981	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413"	-	
ENSG00000213926	0	genome.wustl.edu	37	19	39745695	39745696	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39745695	39745696	-	C	INS	ENSG00000213926	ENST00000396851	human	ensembl	57_37b	-1	known	frame_shift_ins	c.213_212	p.C71fs	0.971:1.000	HMMPfam_SelR,superfamily_Mss4-like	HMMPfam_SelR,superfamily_Mss4-like	-	no_errors
ENSG00000223616	0	genome.wustl.edu	37	13	23253313	23253313	+	Silent	SNP	T	C	C	rs9506904	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	23253313	23253313	T	C	SNP	ENSG00000223616	ENST00000419468	human	ensembl	57_37b	+1	known	silent	c.1002	p.T334	0.000	NULL	NULL	-	
ENSG00000229319	0	genome.wustl.edu	37	16	79998075	79998075	+	Silent	SNP	T	G	G	rs66539665	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	79998075	79998075	T	G	SNP	ENSG00000229319	ENST00000450672	human	ensembl	57_37b	-1	known	silent	c.52	p.R18	0.005	NULL	NULL	-	
ENSG00000230264	0	genome.wustl.edu	37	19	3149036	3149037	+	Frame_Shift_Ins	INS	-	-	ACAT	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3149036	3149037	-	ACAT	INS	ENSG00000230264	ENST00000445542	human	ensembl	57_37b	-1	known	frame_shift_ins	c.368_367	p.C123fs	0.997:0.996	NULL	NULL	-	no_errors
ENSG00000244841	0	genome.wustl.edu	37	17	80348594	80348594	+	RNA	SNP	G	A	A	rs9891189	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80348594	80348594	G	A	SNP	ENSG00000244841	ENST00000499950	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.061	-	-	-	
ENSG00000244981	0	genome.wustl.edu	37	7	1098372	1098372	+	RNA	SNP	G	A	A	rs2293522	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	1098372	1098372	G	A	SNP	ENSG00000244981	ENST00000501630	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000244983	0	genome.wustl.edu	37	4	90167253	90167253	+	RNA	SNP	T	C	C	rs1835678	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	90167253	90167253	T	C	SNP	ENSG00000244983	ENST00000500973	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245055	0	genome.wustl.edu	37	1	19399623	19399623	+	RNA	SNP	A	G	G	rs942183	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19399623	19399623	A	G	SNP	ENSG00000245055	ENST00000502208	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245399	0	genome.wustl.edu	37	6	31321775	31321775	+	RNA	SNP	G	G	A	rs10947205	byCluster	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	31321775	31321775	G	A	SNP	ENSG00000245399	ENST00000500714	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000245569	0	genome.wustl.edu	37	5	14870158	14870159	+	RNA	INS	-	-	GAA	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14870158	14870159	-	GAA	INS	ENSG00000245569	ENST00000499270	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000246528	0	genome.wustl.edu	37	8	70748948	70748948	+	RNA	SNP	G	A	A	rs28489918	by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	70748948	70748948	G	A	SNP	ENSG00000246528	ENST00000501104	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000246692	0	genome.wustl.edu	37	7	17982074	17982074	+	RNA	SNP	G	A	A	rs10247652	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	17982074	17982074	G	A	SNP	ENSG00000246692	ENST00000498963	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
ENSG00000246815	0	genome.wustl.edu	37	17	42283781	42283782	+	RNA	INS	-	-	ACAC	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42283781	42283782	-	ACAC	INS	ENSG00000246815	ENST00000502004	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.003:0.002	-	-	-	no_errors
ENSG00000246983	0	genome.wustl.edu	37	2	242617157	242617157	+	RNA	SNP	T	C	C	rs4076644	byCluster;by2Hit2Allele	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242617157	242617157	T	C	SNP	ENSG00000246983	ENST00000502099	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000247132	0	genome.wustl.edu	37	7	127667516	127667516	+	RNA	SNP	G	G	A	rs6944446	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	127667516	127667516	G	A	SNP	ENSG00000247132	ENST00000501852	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.077	-	-	-	
ENSG00000247397	0	genome.wustl.edu	37	8	12439492	12439492	+	RNA	SNP	C	C	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	12439492	12439492	C	A	SNP	ENSG00000247397	ENST00000500162	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.027	-	-	-	no_errors
ENSG00000247803	0	genome.wustl.edu	37	20	20371406	20371406	+	RNA	SNP	C	T	T	rs3748446	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20371406	20371406	C	T	SNP	ENSG00000247803	ENST00000501037	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	
FAM189A1	23359	genome.wustl.edu	37	15	29415560	29415560	+	Silent	SNP	G	G	A	rs3751562	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	29415560	29415560	G	A	SNP	FAM189A1	NM_015307	human	genbank	57_37b	-1	validated	silent	c.1602	p.D534	0.001	NULL	NULL	-	
FAT1	2195	genome.wustl.edu	37	4	187539727	187539727	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	187539727	187539727	G	T	SNP	FAT1	NM_005245	human	genbank	57_37b	-1	reviewed	missense	c.8013	p.F2671L	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CADHERIN_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
FNBP1	23048	genome.wustl.edu	37	9	132662786	132662786	+	Missense_Mutation	SNP	C	C	T	rs1023000	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	132662786	132662786	C	T	SNP	FNBP1	NM_015033	human	genbank	57_37b	-1	reviewed	missense	c.1469	p.S490N	0.000	NULL	HMMPfam_FCH,HMMSmart_SM00055,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	
FOXO3B	0	genome.wustl.edu	37	17	18574941	18574941	+	RNA	SNP	G	G	A	rs116821563	by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	18574941	18574941	G	A	SNP	FOXO3B	NR_026718	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.815	-	-	-	
HPCAL4	51440	genome.wustl.edu	37	1	40149642	40149642	+	Silent	SNP	G	G	T	rs784634	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40149642	40149642	G	T	SNP	HPCAL4	NM_016257	human	genbank	57_37b	-1	reviewed	silent	c.345	p.R115	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	
HPSE2	60495	genome.wustl.edu	37	10	100219374	100219374	+	Missense_Mutation	SNP	T	T	A	rs10883100	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	100219374	100219374	T	A	SNP	HPSE2	NM_021828	human	genbank	57_37b	-1	reviewed	missense	c.1736	p.Y579F	1.000	NULL	HMMPfam_Glyco_hydro_79n	-	
KCND3	3752	genome.wustl.edu	37	1	112525097	112525097	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112525097	112525097	G	A	SNP	KCND3	NM_004980	human	genbank	57_37b	-1	reviewed	silent	c.252	p.F84	0.747	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
KCNQ1OT1	10984	genome.wustl.edu	37	11	2689546	2689546	+	RNA	SNP	T	C	C	rs1459825	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	2689546	2689546	T	C	SNP	KCNQ1OT1	NR_002728	human	genbank	57_37b	-1	reviewed	rna	NULL	NULL	0.000	-	-	-	
KHSRP	8570	genome.wustl.edu	37	19	6416411	6416411	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6416411	6416411	A	G	SNP	KHSRP	NM_003685	human	genbank	57_37b	-1	validated	missense	c.1496	p.L499P	1.000	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMSmart_SM00322,HMMPfam_KH_1,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_DUF1897	-	no_errors
LOC100128006	0	genome.wustl.edu	37	17	12665853	12665854	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	12665853	12665854	TG	-	DEL	LOC100128006	XR_078523	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000:0.000	-	-	(deletion:rna[12663451,12667035])	no_errors
LOC100131014	0	genome.wustl.edu	37	18	74691951	74691951	+	Missense_Mutation	SNP	T	T	C	rs1048871	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	74691951	74691951	T	C	SNP	LOC100131014	XM_001715758	human	genbank	57_37b	+1	model	missense	c.11	p.V4A	0.999	NULL	NULL	-	
LOC100287244	0	genome.wustl.edu	37	17	20908082	20908103	+	Frame_Shift_Del	DEL	TAGTGGAGCTGCGGGCAGCCAA	TAGTGGAGCTGCGGGCAGCCAA	-	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	TAGTGGAGCTGCGGGCAGCCAA	TAGTGGAGCTGCGGGCAGCCAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	20908082	20908103	TAGTGGAGCTGCGGGCAGCCAA	-	DEL	LOC100287244	XM_002343484	human	genbank	57_37b	+1	model	frame_shift_del	c.389_410	p.R134fs	0.000:0.000:0.000:0.000:0.001:0.003:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.000:0.000:0.000	NULL	NULL	(deletion:cds_exon[20907962,20908136])	no_errors
LOC100287460	0	genome.wustl.edu	37	1	162354803	162354803	+	Missense_Mutation	SNP	G	C	C	rs3738393	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	162354803	162354803	G	C	SNP	LOC100287460	XM_002342148	human	genbank	57_37b	-1	model	missense	c.146	p.T49R	1.000	NULL	NULL	-	
LOC100287514	0	genome.wustl.edu	37	20	55961356	55961356	+	Missense_Mutation	SNP	C	T	T	rs6064542	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	55961356	55961356	C	T	SNP	LOC100287514	XM_002343713	human	genbank	57_37b	-1	model	missense	c.1034	p.R345H	0.004	NULL	NULL	-	
LOC100288674	0	genome.wustl.edu	37	17	2599612	2599612	+	Missense_Mutation	SNP	C	G	G	rs2302200	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	2599612	2599612	C	G	SNP	LOC100288674	XM_002343499	human	genbank	57_37b	+1	model	missense	c.289	p.R97G	0.000	NULL	NULL	-	
LOC100291131	0	genome.wustl.edu	37	4	1568190	1568190	+	Missense_Mutation	SNP	T	C	C	rs7377488	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	1568190	1568190	T	C	SNP	LOC100291131	XM_002346600	human	genbank	57_37b	+1	model	missense	c.2530	p.S844P	0.977	NULL	NULL	-	
LOC100292005	0	genome.wustl.edu	37	2	25107759	25107759	+	Missense_Mutation	SNP	C	T	T	rs11686663	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	25107759	25107759	C	T	SNP	LOC100292005	XM_002345536	human	genbank	57_37b	+1	model	missense	c.532	p.P178S	0.000	NULL	NULL	-	
LOC100292891	0	genome.wustl.edu	37	2	6871391	6871391	+	Missense_Mutation	SNP	G	G	A	rs111795552	by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	6871391	6871391	G	A	SNP	LOC100292891	XM_002345512	human	genbank	57_37b	-1	model	missense	c.158	p.T53I	0.012	NULL	NULL	-	
LOC100293008	0	genome.wustl.edu	37	8	22664798	22664798	+	RNA	SNP	A	C	C	rs11985147	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22664798	22664798	A	C	SNP	LOC100293008	XR_079050	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-	
LOC100294300	0	genome.wustl.edu	37	6	372706	372706	+	Missense_Mutation	SNP	T	T	A	rs2797294	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	372706	372706	T	A	SNP	LOC100294300	XM_002344034	human	genbank	57_37b	+1	model	missense	c.51	p.D17E	0.000	NULL	NULL	-	
LOC146336	146336	genome.wustl.edu	37	16	1116243	1116243	+	RNA	SNP	C	T	T	rs35432067	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1116243	1116243	C	T	SNP	LOC146336	NR_027242	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.006	-	-	-	
LOC285593	0	genome.wustl.edu	37	5	173011975	173011975	+	RNA	SNP	C	C	T	rs735059	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	173011975	173011975	C	T	SNP	LOC285593	NR_027108	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.004	-	-	-	
LOC392288	392288	genome.wustl.edu	37	9	19481652	19481652	+	Silent	SNP	A	A	G	rs10757066	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	19481652	19481652	A	G	SNP	LOC392288	XM_373277	human	genbank	57_37b	-1	model	silent	c.342	p.C114	0.009	NULL	superfamily_Ubiquitin-like,HMMPfam_MAP1_LC3	-	
LOC439953	439953	genome.wustl.edu	37	10	32477573	32477573	+	RNA	SNP	G	G	A	rs4749714	byCluster;byFrequency;by2Hit2Allele	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	32477573	32477573	G	A	SNP	LOC439953	XR_017375	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-	
LOC643988	643988	genome.wustl.edu	37	1	1533479	1533479	+	RNA	SNP	C	C	G	rs28737320	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1533479	1533479	C	G	SNP	LOC643988	XR_042003	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.997	-	-	-	
LOC653071	653071	genome.wustl.edu	37	4	68296	68296	+	RNA	SNP	G	G	C	rs6828143	byCluster;byFrequency	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	68296	68296	G	C	SNP	LOC653071	XR_078735	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.000	-	-	-	
LOC729312	729312	genome.wustl.edu	37	2	565826	565826	+	Missense_Mutation	SNP	G	A	A	rs11127477	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	565826	565826	G	A	SNP	LOC729312	XM_001715512	human	genbank	57_37b	+1	model	missense	c.380	p.R127H	0.001	NULL	NULL	-	
LRIG1	26018	genome.wustl.edu	37	3	66431280	66431280	+	Missense_Mutation	SNP	C	T	T	rs9877201	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	66431280	66431280	C	T	SNP	LRIG1	NM_015541	human	genbank	57_37b	-1	validated	missense	c.2776	p.G926S	0.000	NULL	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00365,HMMSmart_SM00082,HMMPfam_LRRCT,HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408	-	
LRWD1	222229	genome.wustl.edu	37	7	102112980	102112980	+	Missense_Mutation	SNP	G	G	A	rs3800987	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	102112980	102112980	G	A	SNP	LRWD1	ENST00000468175	human	ensembl	57_37b	+1	known	missense	c.371	p.R124Q	0.000	NULL	NULL	-	
MAGEA4	4103	genome.wustl.edu	37	X	151092086	151092086	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151092086	151092086	A	G	SNP	MAGEA4	ENST00000427663	human	ensembl	57_37b	+1	known	missense	c.34	p.I12V	0.000	NULL	HMMPfam_MAGE	-	no_errors
MAT2A	4144	genome.wustl.edu	37	2	85769379	85769379	+	Silent	SNP	A	A	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85769379	85769379	A	G	SNP	MAT2A	NM_005911	human	genbank	57_37b	+1	validated	silent	c.651	p.E217	0.975	HMMPfam_S-AdoMet_synt_M,superfamily_S-adenosylmethionine synthetase	HMMPfam_S-AdoMet_synt_N,superfamily_S-adenosylmethionine synthetase,HMMPfam_S-AdoMet_synt_M,PatternScan_ADOMET_SYNTHETASE_1,HMMPfam_S-AdoMet_synt_C,PatternScan_ADOMET_SYNTHETASE_2	-	no_errors
MBOAT4	619373	genome.wustl.edu	37	8	29996256	29996256	+	Missense_Mutation	SNP	T	C	C	rs7813902	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	29996256	29996256	T	C	SNP	MBOAT4	NM_001100916	human	genbank	57_37b	-1	validated	missense	c.136	p.T46A	0.065	NULL	HMMPfam_MBOAT	-	
MGC15885	197003	genome.wustl.edu	37	15	62936830	62936830	+	RNA	SNP	C	C	T	rs11852582	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	62936830	62936830	C	T	SNP	MGC15885	NR_026897	human	genbank	57_37b	-1	predicted	rna	NULL	NULL	0.000	-	-	-	
MST1	4485	genome.wustl.edu	37	3	49722303	49722303	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49722303	49722303	G	A	SNP	MST1	NM_020998	human	genbank	57_37b	-1	reviewed	missense	c.1637	p.T546M	0.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,superfamily_Kringle-like,HMMSmart_SM00130,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195497121	195497121	+	Missense_Mutation	SNP	T	T	C	rs79706438	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195497121	195497121	T	C	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	missense	c.12980	p.N4327S	0.000	HMMSmart_SM00539	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	
MYH14	79784	genome.wustl.edu	37	19	50804951	50804951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50804951	50804951	C	T	SNP	MYH14	NM_001077186	human	genbank	57_37b	+1	reviewed	missense	c.5404	p.R1802C	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors
MYLK	4638	genome.wustl.edu	37	3	123512533	123512533	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	123512533	123512533	G	A	SNP	MYLK	NM_053025	human	genbank	57_37b	-1	reviewed	silent	c.156	p.F52	0.999	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MYT1L	23040	genome.wustl.edu	37	2	2001120	2001120	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	2001120	2001120	C	T	SNP	MYT1L	NM_015025	human	genbank	57_37b	-1	validated	splice_site	c.1-1	e1-1	1.000	-	-	-	no_errors
NAPA	8775	genome.wustl.edu	37	19	47994082	47994082	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47994082	47994082	G	A	SNP	NAPA	NM_003827	human	genbank	57_37b	-1	reviewed	missense	c.698	p.P233L	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_NSF	-	no_errors
NAT15	79903	genome.wustl.edu	37	16	3534892	3534892	+	Missense_Mutation	SNP	G	A	A	rs13740	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3534892	3534892	G	A	SNP	NAT15	ENST00000421765	human	ensembl	57_37b	+1	known	missense	c.539	p.R180Q	0.000	NULL	superfamily_Acyl-CoA N-acyltransferases (Nat)	-	
NHLRC3	387921	genome.wustl.edu	37	13	39616426	39616426	+	Silent	SNP	G	A	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	39616426	39616426	G	A	SNP	NHLRC3	NM_001012754	human	genbank	57_37b	+1	validated	silent	c.570	p.L190	0.994	superfamily_SSF101898,HMMPfam_NHL	superfamily_SSF101898,HMMPfam_NHL	-	no_errors
NOC2L	26155	genome.wustl.edu	37	1	887801	887801	+	Silent	SNP	A	A	G	rs3828047	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	887801	887801	A	G	SNP	NOC2L	NM_015658	human	genbank	57_37b	-1	validated	silent	c.1182	p.T394	0.049	HMMPfam_Noc2	HMMPfam_Noc2	-	
NRXN3	9369	genome.wustl.edu	37	14	80328256	80328256	+	Silent	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	80328256	80328256	G	A	SNP	NRXN3	NM_004796	human	genbank	57_37b	+1	reviewed	silent	c.3135	p.S1045	0.092	NULL	superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,HMMSmart_LamG,HMMSmart_EGF,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_4.1m	-	no_errors
NSUN5	55695	genome.wustl.edu	37	7	72717933	72717933	+	Silent	SNP	C	T	T	rs61750968	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	72717933	72717933	C	T	SNP	NSUN5	NM_148956	human	genbank	57_37b	-1	reviewed	silent	c.1035	p.A345	0.111	superfamily_SSF53335	superfamily_SSF53335,HMMPfam_Nol1_Nop2_Fmu	-	
PADI4	23569	genome.wustl.edu	37	1	17668504	17668504	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17668504	17668504	T	C	SNP	PADI4	NM_012387	human	genbank	57_37b	+1	reviewed	missense	c.719	p.V240A	0.001	HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain	HMMPfam_PAD_N,superfamily_Cupredoxins,HMMPfam_PAD_M,superfamily_Peptidylarginine deiminase Pad4 middle domain,HMMPfam_PAD,superfamily_Pentein	-	no_errors
PCSK7	9159	genome.wustl.edu	37	11	117097952	117097952	+	Silent	SNP	C	C	T	rs2306473	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117097952	117097952	C	T	SNP	PCSK7	NM_004716	human	genbank	57_37b	-1	reviewed	silent	c.690	p.T230	0.081	superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS	PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Gal_bind_like,HMMPfam_P_proprotein	-	
PGAP2	27315	genome.wustl.edu	37	11	3847430	3847430	+	RNA	SNP	C	T	T	rs15820	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	3847430	3847430	C	T	SNP	PGAP2	NR_027014	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.020	-	-	-	
PHF20L1	51105	genome.wustl.edu	37	8	133829783	133829784	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133829783	133829784	-	G	INS	PHF20L1	NM_016018	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1572_1573	p.A524fs	0.846:0.842	NULL	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00333,HMMSmart_SM00743,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
POLR2I	5438	genome.wustl.edu	37	19	36605582	36605582	+	Silent	SNP	C	C	T	rs2231567	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36605582	36605582	C	T	SNP	POLR2I	NM_006233	human	genbank	57_37b	-1	reviewed	silent	c.93	p.E31	1.000	superfamily_Zinc beta-ribbon,HMMPfam_RNA_POL_M_15KD,HMMSmart_SM00661,PatternScan_RNA_POL_M_15KD	superfamily_Zinc beta-ribbon,HMMPfam_RNA_POL_M_15KD,HMMSmart_SM00661,PatternScan_RNA_POL_M_15KD,HMMSmart_SM00440,PatternScan_ZF_TFIIS_1,PatternScan_IG_MHC	-	
PPL	5493	genome.wustl.edu	37	16	4935985	4935985	+	Missense_Mutation	SNP	C	C	G	rs35869286	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4935985	4935985	C	G	SNP	PPL	NM_002705	human	genbank	57_37b	-1	reviewed	missense	c.2671	p.E891Q	1.000	NULL	HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	
PRRG2	5639	genome.wustl.edu	37	19	50086806	50086806	+	Silent	SNP	C	T	T	rs3745474	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50086806	50086806	C	T	SNP	PRRG2	NM_000951	human	genbank	57_37b	+1	validated	silent	c.93	p.F31	1.000	HMMSmart_GLA	HMMSmart_GLA,superfamily_VitK_dep_GLA,HMMPfam_Gla,PatternScan_GLA_1	-	
RGS12	6002	genome.wustl.edu	37	4	3318059	3318059	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3318059	3318059	T	G	SNP	RGS12	NM_198229	human	genbank	57_37b	+1	reviewed	missense	c.162	p.D54E	0.002	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315,superfamily_Ubiquitin-like,HMMPfam_RBD,HMMSmart_SM00455,HMMPfam_GoLoco,HMMSmart_SM00390	-	no_errors
RPS20	6224	genome.wustl.edu	37	8	56985781	56985781	+	Silent	SNP	C	C	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	56985781	56985781	C	G	SNP	RPS20	NM_001023	human	genbank	57_37b	-1	reviewed	silent	c.228	p.T76	0.579	superfamily_Ribosomal protein S10,HMMPfam_Ribosomal_S10	superfamily_Ribosomal protein S10,HMMPfam_Ribosomal_S10,PatternScan_RIBOSOMAL_S10	-	no_errors
SATB1	6304	genome.wustl.edu	37	3	18390811	18390811	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	18390811	18390811	C	T	SNP	SATB1	NM_001131010	human	genbank	57_37b	-1	validated	missense	c.2143	p.D715N	1.000	superfamily_Homeodomain-like	HMMPfam_CUT,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox	-	no_errors
SCLY	51540	genome.wustl.edu	37	2	239006879	239006879	+	Silent	SNP	C	C	T	rs12993309	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	239006879	239006879	C	T	SNP	SCLY	NM_016510	human	genbank	57_37b	+1	validated	silent	c.1221	p.F407	0.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	-	
SDCCAG1	9147	genome.wustl.edu	37	14	50267209	50267209	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	50267209	50267209	C	A	SNP	SDCCAG1	NM_004713	human	genbank	57_37b	-1	validated	missense	c.2301	p.M767I	0.358	NULL	HMMPfam_FbpA,HMMPfam_DUF814	-	no_errors
SEMA4B	10509	genome.wustl.edu	37	15	90772276	90772276	+	Missense_Mutation	SNP	C	C	G	rs74037060	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90772276	90772276	C	G	SNP	SEMA4B	ENST00000437083	human	ensembl	57_37b	+1	known	missense	c.70	p.L24V	0.000	NULL	NULL	-	
SLC13A5	284111	genome.wustl.edu	37	17	6590917	6590918	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6590917	6590918	-	A	INS	SLC13A5	NM_177550	human	genbank	57_37b	-1	validated	frame_shift_ins	c.1506_1505	p.M503fs	1.000:1.000	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors
SLC25A23	79085	genome.wustl.edu	37	19	6458240	6458240	+	Silent	SNP	G	G	C	rs2289784	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6458240	6458240	G	C	SNP	SLC25A23	NM_024103	human	genbank	57_37b	-1	validated	silent	c.252	p.L84	1.000	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	
SLC35A4	113829	genome.wustl.edu	37	5	139946888	139946888	+	Missense_Mutation	SNP	G	G	A	rs61745336	by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	139946888	139946888	G	A	SNP	SLC35A4	NM_080670	human	genbank	57_37b	+1	provisional	missense	c.134	p.R45Q	0.048	NULL	superfamily_SSF103481,HMMPfam_Nuc_sug_transp	-	
SLC35C1	55343	genome.wustl.edu	37	11	45832509	45832509	+	Missense_Mutation	SNP	A	A	G	rs7130656	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	45832509	45832509	A	G	SNP	SLC35C1	NM_018389	human	genbank	57_37b	+1	reviewed	missense	c.718	p.I240V	0.784	HMMPfam_TPT	superfamily_Multidrug resistance efflux transporter EmrE,HMMPfam_TPT	-	
SMARCA4	6597	genome.wustl.edu	37	19	11095980	11095980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11095980	11095980	C	T	SNP	SMARCA4	NM_001128849	human	genbank	57_37b	+1	reviewed	missense	c.254	p.S85L	0.711	NULL	HMMPfam_QLQ,superfamily_SSF52540,HMMPfam_HSA,HMMSmart_HSA,HMMPfam_BRK,HMMSmart_BRK,HMMSmart_DEXDc,HMMPfam_SNF2_N,HMMSmart_HELICc,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
SMOC2	64094	genome.wustl.edu	37	6	169053691	169053691	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	169053691	169053691	C	A	SNP	SMOC2	NM_022138	human	genbank	57_37b	+1	reviewed	missense	c.1101	p.F367L	1.000	superfamily_SSF47473,HMMSmart_EFh	superfamily_Thyroglobulin_1,HMMSmart_KAZAL,HMMPfam_Kazal_1,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_TY,superfamily_SSF47473,HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_SPARC_Ca_bdg	-	no_errors
SPP2	6694	genome.wustl.edu	37	2	234959682	234959682	+	Silent	SNP	G	G	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	234959682	234959682	G	T	SNP	SPP2	NM_006944	human	genbank	57_37b	+1	reviewed	silent	c.153	p.V51	0.995	superfamily_Cystatin/monellin	superfamily_Cystatin/monellin,HMMPfam_Spp-24	-	no_errors
STRA6	64220	genome.wustl.edu	37	15	74494504	74494504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74494504	74494504	C	T	SNP	STRA6	NM_001142617	human	genbank	57_37b	-1	reviewed	silent	c.105	p.Q35	0.001	NULL	NULL	-	no_errors
SYNGR1	9145	genome.wustl.edu	37	22	39770597	39770597	+	Missense_Mutation	SNP	A	G	G	rs4821888	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	39770597	39770597	A	G	SNP	SYNGR1	ENST00000415332	human	ensembl	57_37b	+1	known	missense	c.376	p.T126A	0.000	HMMPfam_MARVEL	PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_MARVEL	-	
SYVN1	84447	genome.wustl.edu	37	11	64897543	64897543	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64897543	64897543	C	G	SNP	SYVN1	NM_172230	human	genbank	57_37b	-1	reviewed	missense	c.1339	p.E447Q	0.043	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
TGM6	343641	genome.wustl.edu	37	20	2380323	2380323	+	Silent	SNP	G	G	A	rs6114033	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2380323	2380323	G	A	SNP	TGM6	NM_198994	human	genbank	57_37b	+1	validated	silent	c.789	p.K263	1.000	superfamily_Cysteine proteinases	HMMPfam_Transglut_N,superfamily_E set domains,superfamily_Cysteine proteinases,HMMSmart_SM00460,HMMPfam_Transglut_core,PatternScan_TRANSGLUTAMINASES,superfamily_Transglutaminase two C-terminal domains,HMMPfam_Transglut_C	-	
TMCC3	57458	genome.wustl.edu	37	12	94972290	94972290	+	Silent	SNP	C	C	T	rs2270893	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	94972290	94972290	C	T	SNP	TMCC3	NM_020698	human	genbank	57_37b	-1	validated	silent	c.1011	p.E337	0.999	HMMPfam_Tmemb_cc2	HMMPfam_Tmemb_cc2	-	
TMEM203	94107	genome.wustl.edu	37	9	140099675	140099675	+	Silent	SNP	G	G	A	rs113235610	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140099675	140099675	G	A	SNP	TMEM203	NM_053045	human	genbank	57_37b	-1	validated	silent	c.192	p.T64	1.000	NULL	NULL	-	
TMEM72	0	genome.wustl.edu	37	10	45423377	45423377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	45423377	45423377	G	A	SNP	TMEM72	NM_001123376	human	genbank	57_37b	+1	provisional	missense	c.79	p.G27S	1.000	NULL	NULL	-	no_errors
TMEM87A	25963	genome.wustl.edu	37	15	42565588	42565588	+	Silent	SNP	C	C	A	rs2277533	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42565588	42565588	C	A	SNP	TMEM87A	NM_015497	human	genbank	57_37b	-1	validated	silent	c.9	p.A3	0.878	NULL	HMMPfam_Lung_7-TM_R	-	
TPTE2P1	0	genome.wustl.edu	37	13	25508701	25508701	+	RNA	SNP	C	T	T	rs2053922	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	25508701	25508701	C	T	SNP	TPTE2P1	NR_026730	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	0.000	-	-	-	
TRERF1	55809	genome.wustl.edu	37	6	42227324	42227324	+	Silent	SNP	A	A	G	rs73733129	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	42227324	42227324	A	G	SNP	TRERF1	NM_033502	human	genbank	57_37b	-1	reviewed	silent	c.2022	p.A674	0.044	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_ELM2,superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	
VDR	7421	genome.wustl.edu	37	12	48238757	48238757	+	Silent	SNP	A	A	G	rs731236	byCluster;byFrequency;bySubmitter;by2Hit2Allele;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	48238757	48238757	A	G	SNP	VDR	NM_000376	human	genbank	57_37b	-1	reviewed	silent	c.1056	p.I352	0.006	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	
VWA5B2	90113	genome.wustl.edu	37	3	183956482	183956482	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183956482	183956482	G	A	SNP	VWA5B2	NM_138345	human	genbank	57_37b	+1	provisional	missense	c.2023	p.E675K	0.998	NULL	superfamily_SSF53300,HMMSmart_VWA	-	no_errors
WDR81	124997	genome.wustl.edu	37	17	1631568	1631568	+	Silent	SNP	G	G	A	rs73292910	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1631568	1631568	G	A	SNP	WDR81	ENST00000409644	human	ensembl	57_37b	+1	known	silent	c.3315	p.L1105	0.998	superfamily_WD40 repeat-like	superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,PatternScan_FBPASE,HMMSmart_SM00320,HMMPfam_WD40	-	
XPO7	23039	genome.wustl.edu	37	8	21844661	21844661	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	21844661	21844661	G	T	SNP	XPO7	NM_001100161	human	genbank	57_37b	+1	validated	missense	c.1614	p.Q538H	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N	-	no_errors
ZDHHC22	283576	genome.wustl.edu	37	14	77605953	77605953	+	Silent	SNP	G	G	A	rs35145114	byCluster;byFrequency;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	77605953	77605953	G	A	SNP	ZDHHC22	NM_174976	human	genbank	57_37b	-1	validated	silent	c.129	p.L43	0.852	NULL	HMMPfam_zf-DHHC	-	
ZNF840	0	genome.wustl.edu	37	20	45120835	45120835	+	Missense_Mutation	SNP	A	A	C	rs61369707	byCluster;by1000genomes	TCGA-B6-A0X5-01A-21D-A10G-09	TCGA-B6-A0X5-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	45120835	45120835	A	C	SNP	ZNF840	XM_001722110	human	genbank	57_37b	+1	model	missense	c.2499	p.Q833H	0.026	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
