Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADCY6	112	genome.wustl.edu	37	12	49162816	49162816	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49162816	49162816	A	C	SNP	ADCY6	NM_015270	human	genbank	57_37b	-1	reviewed	silent	c.3285	p.G1095	0.926	HMMSmart_SM00044,HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
BMPER	168667	genome.wustl.edu	37	7	34125684	34125684	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	34125684	34125684	G	A	SNP	BMPER	NM_133468	human	genbank	57_37b	+1	validated	silent	c.1725	p.V575	0.997	HMMPfam_C8	HMMSmart_VWC,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_VWD,HMMPfam_VWD,HMMPfam_C8,superfamily_Cysrich_TIL,HMMPfam_TIL	-	no_errors
C2orf86	51057	genome.wustl.edu	37	2	63714608	63714608	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	63714608	63714608	G	A	SNP	C2orf86	NM_015910	human	genbank	57_37b	-1	validated	nonsense	c.181	p.Q61*	1.000	NULL	NULL	-	no_errors
C2orf86	51057	genome.wustl.edu	37	2	63714608	63714608	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	63714608	63714608	G	A	SNP	C2orf86	NM_015910	human	genbank	57_37b	-1	validated	nonsense	c.181	p.Q61*	1.000	NULL	NULL	-	no_errors
CACNG8	59283	genome.wustl.edu	37	19	54483190	54483190	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	54483190	54483190	T	G	SNP	CACNG8	NM_031895	human	genbank	57_37b	+1	reviewed	missense	c.437	p.V146G	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin	-	no_errors
CHTF18	63922	genome.wustl.edu	37	16	845275	845275	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	845275	845275	A	C	SNP	CHTF18	NM_022092	human	genbank	57_37b	+1	validated	silent	c.2094	p.P698	0.644	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	-	no_errors
CR2	1380	genome.wustl.edu	37	1	207644142	207644142	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207644142	207644142	G	C	SNP	CR2	NM_001006658	human	genbank	57_37b	+1	reviewed	missense	c.1283	p.R428P	0.142	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	-	no_errors
DNAH1	25981	genome.wustl.edu	37	3	52402833	52402833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52402833	52402833	G	A	SNP	DNAH1	NM_015512	human	genbank	57_37b	+1	validated	missense	c.5842	p.D1948N	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DSCAML1	57453	genome.wustl.edu	37	11	117351189	117351189	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	117351189	117351189	C	T	SNP	DSCAML1	NM_020693	human	genbank	57_37b	-1	provisional	silent	c.2934	p.T978	0.738	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,HMMSmart_SM00406,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
DSG3	1830	genome.wustl.edu	37	18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29041208	29041208	G	T	SNP	DSG3	NM_001944	human	genbank	57_37b	+1	reviewed	nonsense	c.832	p.E278*	0.950	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1	-	no_errors
DSG3	1830	genome.wustl.edu	37	18	29041208	29041208	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	29041208	29041208	G	T	SNP	DSG3	NM_001944	human	genbank	57_37b	+1	reviewed	nonsense	c.832	p.E278*	0.950	superfamily_Cadherin,HMMPfam_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin,PatternScan_CADHERIN_1	-	no_errors
FBN3	84467	genome.wustl.edu	37	19	8201277	8201277	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8201277	8201277	C	T	SNP	FBN3	NM_032447	human	genbank	57_37b	-1	reviewed	missense	c.1340	p.C447Y	1.000	HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
GRIN2B	2904	genome.wustl.edu	37	12	13716941	13716941	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	13716941	13716941	G	A	SNP	GRIN2B	NM_000834	human	genbank	57_37b	-1	reviewed	silent	c.3231	p.A1077	0.015	HMMPfam_NMDAR2_C	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan,HMMPfam_NMDAR2_C	-	no_errors
IFT172	26160	genome.wustl.edu	37	2	27667302	27667302	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27667302	27667302	C	A	SNP	IFT172	NM_015662	human	genbank	57_37b	-1	validated	missense	c.5247	p.Q1749H	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_TPR-like,superfamily_HCP-like	-	no_errors
NTNG1	22854	genome.wustl.edu	37	1	107691296	107691296	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	107691296	107691296	G	T	SNP	NTNG1	NM_001113226	human	genbank	57_37b	+1	validated	missense	c.81	p.W27C	1.000	NULL	HMMPfam_Laminin_N,HMMSmart_SM00136,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,HMMSmart_SM00181,PatternScan_EGF_LAM_1,HMMPfam_EGF_2	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	G	rs104886003	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	G	G						Unknown	Unknown	Phase_IV	Capture			1	Illumina GAIIx	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-
PKNOX2	63876	genome.wustl.edu	37	11	125237868	125237868	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125237868	125237868	C	T	SNP	PKNOX2	NM_022062	human	genbank	57_37b	+1	validated	nonsense	c.214	p.R72*	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
PKNOX2	63876	genome.wustl.edu	37	11	125237868	125237868	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-11A-33D-A10Y-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	125237868	125237868	C	T	SNP	PKNOX2	NM_022062	human	genbank	57_37b	+1	validated	nonsense	c.214	p.R72*	1.000	NULL	PatternScan_HOMEOBOX_1,superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox	-	no_errors
SLC27A5	10998	genome.wustl.edu	37	19	59010502	59010502	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	59010502	59010502	C	T	SNP	SLC27A5	NM_012254	human	genbank	57_37b	-1	reviewed	missense	c.1753	p.V585M	0.988	superfamily_Acetyl-CoA synthetase-like	superfamily_Acetyl-CoA synthetase-like,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
SLC45A1	50651	genome.wustl.edu	37	1	8390663	8390663	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	8390663	8390663	G	A	SNP	SLC45A1	NM_001080397	human	genbank	57_37b	+1	provisional	silent	c.1110	p.T370	0.941	HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	-	no_errors
ST5	6764	genome.wustl.edu	37	11	8728753	8728753	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	8728753	8728753	C	T	SNP	ST5	NM_005418	human	genbank	57_37b	-1	reviewed	missense	c.2450	p.R817H	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
SUSD4	55061	genome.wustl.edu	37	1	223400952	223400952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	223400952	223400952	C	T	SNP	SUSD4	NM_017982	human	genbank	57_37b	-1	validated	missense	c.1045	p.A349T	1.000	NULL	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
TCTN1	79600	genome.wustl.edu	37	12	111064227	111064227	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	111064227	111064227	C	A	SNP	TCTN1	NM_001082538	human	genbank	57_37b	+1	reviewed	missense	c.402	p.N134K	0.967	HMMPfam_DUF1619	HMMPfam_DUF1619	-	no_errors
VPS4B	9525	genome.wustl.edu	37	18	61067316	61067316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	61067316	61067316	C	T	SNP	VPS4B	NM_004869	human	genbank	57_37b	-1	reviewed	missense	c.755	p.R252H	0.980	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA	HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C	-	no_errors
ZFHX3	463	genome.wustl.edu	37	16	72923665	72923665	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72923665	72923665	A	T	SNP	ZFHX3	NM_006885	human	genbank	57_37b	-1	reviewed	missense	c.3413	p.I1138N	1.000	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,HMMSmart_SM00451,HMMSmart_SM00389,superfamily_Homeodomain-like,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
ZMYND8	23613	genome.wustl.edu	37	20	45867613	45867613	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0BQ-01A-21D-A10Y-09	TCGA-BH-A0BQ-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	45867613	45867613	A	C	SNP	ZMYND8	ENST00000471951	human	ensembl	57_37b	-1	known	missense	c.2557	p.W853G	1.000	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
