Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431	human	genbank	57_37b	-1	reviewed	missense	c.49	p.E17K	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	
ANKRD55	79722	genome.wustl.edu	37	5	55407411	55407411	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	55407411	55407411	G	A	SNP	ANKRD55	NM_024669	human	genbank	57_37b	-1	validated	silent	c.1164	p.I388	0.945	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
ATP2B4	493	genome.wustl.edu	37	1	203690537	203690537	+	Silent	SNP	G	G	A	rs61731213	byCluster;by1000genomes	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	203690537	203690537	G	A	SNP	ATP2B4	NM_001684	human	genbank	57_37b	+1	reviewed	silent	c.2811	p.A937	0.041	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_C	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	
C10orf32	119032	genome.wustl.edu	37	10	104614108	104614108	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104614108	104614108	C	T	SNP	C10orf32	NM_001136200	human	genbank	57_37b	+1	validated	missense	c.65	p.T22M	1.000	NULL	NULL	-	no_errors
C4orf40	401137	genome.wustl.edu	37	4	71024261	71024261	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	71024261	71024261	C	T	SNP	C4orf40	NM_214711	human	genbank	57_37b	+1	validated	nonsense	c.292	p.Q98*	0.000	NULL	NULL	-	no_errors
CHD6	84181	genome.wustl.edu	37	20	40179966	40179966	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	40179966	40179966	T	G	SNP	CHD6	NM_032221	human	genbank	57_37b	-1	reviewed	missense	c.11	p.K4T	1.000	NULL	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_BRK,HMMSmart_SM00592	-	no_errors
CTAGE5	4253	genome.wustl.edu	37	14	39777695	39777695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	39777695	39777695	C	T	SNP	CTAGE5	NM_005930	human	genbank	57_37b	+1	validated	missense	c.1097	p.S366L	1.000	NULL	NULL	-	no_errors
CTTNBP2	83992	genome.wustl.edu	37	7	117420559	117420559	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	117420559	117420559	T	C	SNP	CTTNBP2	NM_033427	human	genbank	57_37b	-1	reviewed	missense	c.2459	p.N820S	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	HMMPfam_CortBP2,superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
DUSP6	1848	genome.wustl.edu	37	12	89745744	89745744	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	89745744	89745744	C	T	SNP	DUSP6	NM_001946	human	genbank	57_37b	-1	reviewed	missense	c.73	p.E25K	1.000	superfamily_Rhodanese/Cell cycle control phosphatase,HMMPfam_Rhodanese,HMMSmart_SM00450	superfamily_Rhodanese/Cell cycle control phosphatase,HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195	-	no_errors
EEA1	8411	genome.wustl.edu	37	12	93205078	93205078	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	93205078	93205078	C	T	SNP	EEA1	NM_003566	human	genbank	57_37b	-1	validated	missense	c.2176	p.E726K	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	-	no_errors
EEF2	1938	genome.wustl.edu	37	19	3982347	3982347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	3982347	3982347	C	T	SNP	EEF2	NM_001961	human	genbank	57_37b	-1	reviewed	missense	c.688	p.E230K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,superfamily_Translation proteins,HMMPfam_GTP_EFTU_D2,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_EFG_IV,HMMPfam_EFG_C	-	no_errors
ENPP1	5167	genome.wustl.edu	37	6	132207790	132207790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	132207790	132207790	C	T	SNP	ENPP1	NM_006208	human	genbank	57_37b	+1	reviewed	missense	c.2533	p.P845S	0.986	superfamily_SSF54060,HMMSmart_NUC	HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,superfamily_Alkaline_phosphatase_core,HMMPfam_Phosphodiest,superfamily_SSF54060,HMMSmart_NUC	-	no_errors
ENSG00000246681	0	genome.wustl.edu	37	6	90077736	90077736	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90077736	90077736	G	A	SNP	ENSG00000246681	ENST00000501686	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000247151	0	genome.wustl.edu	37	11	33212034	33212034	+	RNA	SNP	T	T	G	rs117493429	by1000genomes	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	33212034	33212034	T	G	SNP	ENSG00000247151	ENST00000500025	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.098	-	-	-	
FAM114A2	10827	genome.wustl.edu	37	5	153372571	153372571	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	153372571	153372571	C	T	SNP	FAM114A2	NM_018691	human	genbank	57_37b	-1	validated	missense	c.1483	p.E495K	0.441	NULL	HMMPfam_DUF719	-	no_errors
FAM174B	400451	genome.wustl.edu	37	15	93198621	93198621	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	93198621	93198621	G	A	SNP	FAM174B	NM_207446	human	genbank	57_37b	-1	validated	missense	c.269	p.T90I	1.000	HMMPfam_DUF1180	HMMPfam_DUF1180	-	no_errors
FSD1L	83856	genome.wustl.edu	37	9	108226577	108226577	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	108226577	108226577	A	T	SNP	FSD1L	NM_001145313	human	genbank	57_37b	+1	validated	missense	c.172	p.I58F	1.000	HMMSmart_SM00502	HMMSmart_SM00502,HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00449,HMMPfam_SPRY	-	no_errors
GATA3	2625	genome.wustl.edu	37	10	8115697	8115702	+	Splice_Site	DEL	TTTAGA	TTTAGA	-	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	TTTAGA	TTTAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	8115697	8115702	TTTAGA	-	DEL	GATA3	NM_001002295	human	genbank	57_37b	+1	reviewed	splice_site_del	c.1051-5_1051-1	e5-1	1.000:1.000:1.000:1.000:1.000:1.000	-	-	(deletion:intron[8111562,8115701], cds_exon[8115702,8115986])	no_errors
GNE	10020	genome.wustl.edu	37	9	36217505	36217505	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	36217505	36217505	T	C	SNP	GNE	NM_001128227	human	genbank	57_37b	-1	reviewed	missense	c.2119	p.I707V	0.996	superfamily_SSF53067	superfamily_SSF53756,HMMPfam_Epimerase_2,superfamily_SSF53067,HMMPfam_ROK	-	no_errors
GRB7	2886	genome.wustl.edu	37	17	37898827	37898827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37898827	37898827	G	A	SNP	GRB7	NM_001030002	human	genbank	57_37b	+1	reviewed	missense	c.164	p.R55Q	0.994	NULL	HMMPfam_RA,HMMSmart_SM00314,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_BPS,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
HDAC2	3066	genome.wustl.edu	37	6	114274557	114274557	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	114274557	114274557	C	T	SNP	HDAC2	NM_001527	human	genbank	57_37b	-1	reviewed	missense	c.805	p.D269N	1.000	superfamily_SSF52768,HMMPfam_Hist_deacetyl	superfamily_SSF52768,HMMPfam_Hist_deacetyl	-	no_errors
HRG	3273	genome.wustl.edu	37	3	186395388	186395388	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186395388	186395388	G	A	SNP	HRG	NM_000412	human	genbank	57_37b	+1	reviewed	missense	c.1294	p.G432S	0.110	NULL	HMMSmart_SM00043,HMMPfam_Cystatin,superfamily_Cystatin/monellin	-	no_errors
JAG1	182	genome.wustl.edu	37	20	10627609	10627609	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	10627609	10627609	G	A	SNP	JAG1	NM_000214	human	genbank	57_37b	-1	reviewed	silent	c.1863	p.F621	1.000	HMMSmart_EGF,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_2	HMMPfam_MNNL,HMMPfam_DSL,HMMSmart_DSL,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_VWC	-	no_errors
KIAA1522	57648	genome.wustl.edu	37	1	33236015	33236015	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	33236015	33236015	C	G	SNP	KIAA1522	NM_020888	human	genbank	57_37b	+1	validated	missense	c.1235	p.S412C	1.000	NULL	NULL	-	no_errors
KPRP	448834	genome.wustl.edu	37	1	152733184	152733184	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152733184	152733184	G	A	SNP	KPRP	NM_001025231	human	genbank	57_37b	+1	provisional	missense	c.1120	p.V374I	0.000	NULL	NULL	-	no_errors
LIN28	79727	genome.wustl.edu	37	1	26737895	26737895	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26737895	26737895	C	A	SNP	LIN28	NM_024674	human	genbank	57_37b	+1	validated	missense	c.50	p.A17E	1.000	NULL	superfamily_Nucleic_acid_OB,HMMPfam_CSD,HMMSmart_CSP,superfamily_SSF57756,HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors
LOC100287971	0	genome.wustl.edu	37	12	11035390	11035390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	11035390	11035390	C	T	SNP	LOC100287971	XM_002343154	human	genbank	57_37b	+1	model	silent	c.534	p.L178	0.000	NULL	NULL	-	no_errors
LOC100289071	0	genome.wustl.edu	37	12	49524952	49524952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49524952	49524952	C	T	SNP	LOC100289071	XM_002343170	human	genbank	57_37b	+1	model	missense	c.209	p.S70L	0.000	NULL	NULL	-	no_errors
LOC653111	653111	genome.wustl.edu	37	11	89774444	89774444	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	89774444	89774444	G	A	SNP	LOC653111	XM_926073	human	genbank	57_37b	+1	model	missense	c.1085	p.R362Q	0.013	HMMPfam_SPRY,HMMSmart_SM00449	superfamily_RING/U-box,HMMPfam_zf-C3HC4,HMMSmart_SM00184,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
LTBP2	4053	genome.wustl.edu	37	14	75017969	75017969	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75017969	75017969	C	T	SNP	LTBP2	NM_000428	human	genbank	57_37b	-1	reviewed	missense	c.1484	p.R495Q	0.994	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
MCCC1	56922	genome.wustl.edu	37	3	182788790	182788790	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	182788790	182788790	G	A	SNP	MCCC1	NM_020166	human	genbank	57_37b	-1	reviewed	missense	c.758	p.P253L	1.000	HMMPfam_CPSase_L_D2,superfamily_SSF56059	HMMPfam_CPSase_L_chain,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_2,superfamily_Rudmnt_hyb_motif,HMMPfam_Biotin_carb_C,superfamily_Hybrid_motif,HMMPfam_Biotin_lipoyl,PatternScan_BIOTIN	-	no_errors
PIK3AP1	118788	genome.wustl.edu	37	10	98469693	98469693	+	Missense_Mutation	SNP	C	C	T	rs17112076	byCluster;byFrequency;by1000genomes	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98469693	98469693	C	T	SNP	PIK3AP1	NM_152309	human	genbank	57_37b	-1	validated	missense	c.61	p.E21K	0.002	NULL	superfamily_Ankyrin repeat	-	
PKD1L3	342372	genome.wustl.edu	37	16	72020171	72020171	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	72020171	72020171	C	T	SNP	PKD1L3	ENST00000335106	human	ensembl	57_37b	-1	known	silent	c.783	p.P261	0.000	NULL	superfamily_C-type lectin-like,HMMPfam_GPS,HMMSmart_SM00303,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Ion_trans	-	no_errors
POLD2	5425	genome.wustl.edu	37	7	44161448	44161448	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	44161448	44161448	C	A	SNP	POLD2	NM_001127218	human	genbank	57_37b	-1	validated	missense	c.205	p.A69S	1.000	NULL	HMMPfam_DNA_pol_E_B	-	no_errors
PTPRD	5789	genome.wustl.edu	37	9	8518366	8518366	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	8518366	8518366	G	A	SNP	PTPRD	NM_002839	human	genbank	57_37b	-1	reviewed	missense	c.1025	p.T342M	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PUS10	150962	genome.wustl.edu	37	2	61172191	61172191	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	61172191	61172191	C	G	SNP	PUS10	NM_144709	human	genbank	57_37b	-1	validated	missense	c.1504	p.G502R	1.000	NULL	NULL	-	no_errors
RASGRP3	25780	genome.wustl.edu	37	2	33749576	33749576	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	33749576	33749576	C	G	SNP	RASGRP3	NM_001139488	human	genbank	57_37b	+1	validated	silent	c.768	p.L256	1.000	superfamily_Ras GEF,HMMPfam_RasGEF,HMMSmart_SM00147	HMMSmart_SM00229,superfamily_Ras GEF,HMMPfam_RasGEF_N,HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	-	no_errors
RBPJL	11317	genome.wustl.edu	37	20	43942234	43942234	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	43942234	43942234	C	T	SNP	RBPJL	NM_014276	human	genbank	57_37b	+1	reviewed	missense	c.746	p.T249M	0.984	superfamily_Beta-trefoil,HMMPfam_Beta-trefoil	superfamily_P53_like_DNA_bnd,HMMPfam_LAG1-DNAbind,superfamily_Beta-trefoil,HMMPfam_Beta-trefoil,superfamily_Ig_E-set,HMMPfam_TIG	-	no_errors
RNF14	9604	genome.wustl.edu	37	5	141362978	141362978	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	141362978	141362978	A	-	DEL	RNF14	NM_004290	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1097	p.A367fs	1.000	NULL	superfamily_UBC-like,HMMPfam_RWD,HMMSmart_SM00591,superfamily_RING/U-box,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_2FE2S_FER_1	(deletion:cds_exon[141362945,141363117])	no_errors
RNF20	56254	genome.wustl.edu	37	9	104302598	104302598	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	104302598	104302598	A	C	SNP	RNF20	NM_019592	human	genbank	57_37b	+1	reviewed	silent	c.243	p.R81	0.988	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
ROBLD3	28956	genome.wustl.edu	37	1	156025183	156025184	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156025183	156025184	-	G	INS	ROBLD3	NM_014017	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.198_199	p.D66fs	1.000:1.000	superfamily_Roadblock/LC7 domain,HMMPfam_Robl_LC7	superfamily_Roadblock/LC7 domain,HMMPfam_Robl_LC7	-	no_errors
SAMD9	54809	genome.wustl.edu	37	7	92734890	92734890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	92734890	92734890	C	T	SNP	SAMD9	NM_017654	human	genbank	57_37b	-1	validated	missense	c.521	p.R174H	0.666	NULL	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
SART3	9733	genome.wustl.edu	37	12	108954695	108954695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	108954695	108954695	G	A	SNP	SART3	NM_014706	human	genbank	57_37b	-1	reviewed	missense	c.236	p.S79F	1.000	NULL	superfamily_TPR-like,HMMSmart_SM00386,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,HMMPfam_Lsm_interact	-	no_errors
SERPINC1	462	genome.wustl.edu	37	1	173883952	173883952	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	173883952	173883952	C	T	SNP	SERPINC1	NM_000488	human	genbank	57_37b	-1	reviewed	missense	c.147	p.M49I	1.000	superfamily_Prot_inh_serpin	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
SGOL1	151648	genome.wustl.edu	37	3	20216373	20216373	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	20216373	20216373	G	A	SNP	SGOL1	NM_001012410	human	genbank	57_37b	-1	provisional	missense	c.650	p.A217V	0.000	NULL	HMMPfam_Shugoshin_N,PatternScan_LECTIN_LEGUME_BETA,HMMPfam_Shugoshin_C	-	no_errors
SLC35F3	148641	genome.wustl.edu	37	1	234454539	234454539	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	234454539	234454539	G	T	SNP	SLC35F3	NM_173508	human	genbank	57_37b	+1	provisional	missense	c.997	p.A333S	1.000	NULL	superfamily_SSF103481,HMMPfam_DUF6	-	no_errors
SNORD65	0	genome.wustl.edu	37	17	16344600	16344600	+	RNA	SNP	T	T	C	rs4617905	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16344600	16344600	T	C	SNP	SNORD65	NR_003054	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.000	-	-	-	
SORCS3	22986	genome.wustl.edu	37	10	107007042	107007042	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	107007042	107007042	G	C	SNP	SORCS3	NM_014978	human	genbank	57_37b	+1	reviewed	missense	c.3058	p.E1020Q	1.000	NULL	superfamily_SSF110296,HMMSmart_VPS10,HMMPfam_PKD,superfamily_PKD	-	no_errors
SPHKAP	80309	genome.wustl.edu	37	2	228884721	228884721	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	228884721	228884721	T	C	SNP	SPHKAP	NM_001142644	human	genbank	57_37b	-1	validated	silent	c.849	p.T283	0.001	NULL	HMMPfam_AKAP_110	-	no_errors
SPTLC1	10558	genome.wustl.edu	37	9	94817703	94817703	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	94817703	94817703	C	A	SNP	SPTLC1	NM_006415	human	genbank	57_37b	-1	reviewed	missense	c.764	p.C255F	1.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	-	no_errors
TBCE	6905	genome.wustl.edu	37	1	235597591	235597591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	235597591	235597591	G	A	SNP	TBCE	NM_001079515	human	genbank	57_37b	+1	reviewed	missense	c.733	p.E245K	0.990	superfamily_SSF52047	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_SSF52047,superfamily_SSF54236	-	no_errors
TDRD1	56165	genome.wustl.edu	37	10	115981122	115981122	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	115981122	115981122	C	G	SNP	TDRD1	NM_198795	human	genbank	57_37b	+1	reviewed	missense	c.2777	p.S926C	0.614	NULL	HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_TUDOR,superfamily_SSF63748,HMMSmart_TUDOR	-	no_errors
TMEM132D	121256	genome.wustl.edu	37	12	129566471	129566471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129566471	129566471	C	T	SNP	TMEM132D	NM_133448	human	genbank	57_37b	-1	validated	missense	c.1756	p.E586K	0.976	NULL	NULL	-	no_errors
TMEM151B	441151	genome.wustl.edu	37	6	44243324	44243324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44243324	44243324	C	T	SNP	TMEM151B	NM_001137560	human	genbank	57_37b	+1	validated	missense	c.761	p.A254V	1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577118	7577118	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577118	7577118	C	A	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.820	p.V274F	0.074	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRDN	10345	genome.wustl.edu	37	6	123869608	123869608	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	123869608	123869608	T	C	SNP	TRDN	NM_006073	human	genbank	57_37b	-1	validated	missense	c.382	p.T128A	0.882	HMMPfam_Triadin	HMMPfam_Triadin	-	no_errors
TSHR	7253	genome.wustl.edu	37	14	81610007	81610007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	81610007	81610007	C	T	SNP	TSHR	NM_000369	human	genbank	57_37b	+1	reviewed	silent	c.1605	p.L535	0.619	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_L domain-like,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
UCP1	7350	genome.wustl.edu	37	4	141484632	141484632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	141484632	141484632	C	T	SNP	UCP1	NM_021833	human	genbank	57_37b	-1	reviewed	silent	c.366	p.T122	0.096	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
WIPI1	55062	genome.wustl.edu	37	17	66430737	66430737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	66430737	66430737	C	T	SNP	WIPI1	NM_017983	human	genbank	57_37b	-1	validated	missense	c.652	p.D218N	0.999	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320	-	no_errors
XIRP2	129446	genome.wustl.edu	37	2	168099578	168099578	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	168099578	168099578	C	T	SNP	XIRP2	NM_152381	human	genbank	57_37b	+1	validated	missense	c.1676	p.S559L	0.996	NULL	HMMPfam_Xin	-	no_errors
ZNF238	10472	genome.wustl.edu	37	1	244218261	244218261	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0BR-01A-21W-A12T-09	TCGA-BH-A0BR-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	244218261	244218261	G	A	SNP	ZNF238	NM_205768	human	genbank	57_37b	+1	validated	silent	c.1185	p.Q395	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
