Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAM12	8038	genome.wustl.edu	37	10	127708377	127708377	+	Missense_Mutation	SNP	G	G	T	rs56409749	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	127708377	127708377	G	T	SNP	ADAM12	NM_003474	human	genbank	57_37b	-1	reviewed	missense	c.2556	p.N852K	0.505	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,PatternScan_ZINC_PROTEASE,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2"	-	
ARHGEF6	9459	genome.wustl.edu	37	X	135772826	135772826	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135772826	135772826	T	C	SNP	ARHGEF6	NM_004840	human	genbank	57_37b	-1	reviewed	silent	c.1128	p.P376	0.943	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
ARID1A	8289	genome.wustl.edu	37	1	27099478	27099478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27099478	27099478	G	A	SNP	ARID1A	NM_006015	human	genbank	57_37b	+1	reviewed	missense	c.3715	p.A1239T	1.000	NULL	superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
C14orf39	317761	genome.wustl.edu	37	14	60938273	60938273	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	60938273	60938273	G	A	SNP	C14orf39	NM_174978	human	genbank	57_37b	-1	validated	nonsense	c.508	p.R170*	0.993	NULL	NULL	-	no_errors
C2orf16	84226	genome.wustl.edu	37	2	27804476	27804476	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27804476	27804476	C	T	SNP	C2orf16	NM_032266	human	genbank	57_37b	+1	validated	silent	c.5037	p.R1679	0.000	NULL	NULL	-	no_errors
C2orf90	0	genome.wustl.edu	37	2	905334	905334	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	905334	905334	A	G	SNP	C2orf90	ENST00000434864	human	ensembl	57_37b	-1	known	silent	c.612	p.I204	0.122	NULL	NULL	-	no_errors
CD36	948	genome.wustl.edu	37	7	80285857	80285857	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	80285857	80285857	A	T	SNP	CD36	NM_000072	human	genbank	57_37b	+1	reviewed	missense	c.122	p.Q41L	1.000	HMMPfam_CD36	HMMPfam_CD36	-	no_errors
CDC27	996	genome.wustl.edu	37	17	45219239	45219239	+	Missense_Mutation	SNP	C	C	T	rs79201963	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45219239	45219239	C	T	SNP	CDC27	NM_001114091	human	genbank	57_37b	-1	reviewed	missense	c.1549	p.E517K	1.000	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	
CHRNB1	1140	genome.wustl.edu	37	17	7348625	7348625	+	Missense_Mutation	SNP	A	A	G	rs17856697	byCluster;byFrequency;by1000genomes	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7348625	7348625	A	G	SNP	CHRNB1	NM_000747	human	genbank	57_37b	+1	reviewed	missense	c.95	p.E32G	0.912	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	
CISH	1154	genome.wustl.edu	37	3	50645371	50645371	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50645371	50645371	T	C	SNP	CISH	NM_013324	human	genbank	57_37b	-1	reviewed	silent	c.495	p.P165	0.053	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00253,HMMPfam_SOCS_box	-	no_errors
COL22A1	169044	genome.wustl.edu	37	8	139890151	139890151	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	139890151	139890151	C	T	SNP	COL22A1	NM_152888	human	genbank	57_37b	-1	validated	missense	c.500	p.R167H	0.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
CYP20A1	57404	genome.wustl.edu	37	2	204137424	204137424	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	204137424	204137424	A	G	SNP	CYP20A1	NM_177538	human	genbank	57_37b	+1	reviewed	missense	c.632	p.D211G	1.000	superfamily_Cytochrome_P450	superfamily_Cytochrome_P450,HMMPfam_p450	-	no_errors
DPF2	5977	genome.wustl.edu	37	11	65116380	65116380	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65116380	65116380	G	A	SNP	DPF2	NM_006268	human	genbank	57_37b	+1	reviewed	silent	c.1077	p.P359	0.489	PatternScan_ZF_PHD_1,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
DYSF	8291	genome.wustl.edu	37	2	71744138	71744138	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71744138	71744138	T	C	SNP	DYSF	NM_001130987	human	genbank	57_37b	+1	reviewed	missense	c.971	p.L324P	1.000	superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_C2	HMMSmart_C2,superfamily_C2_CaLB,HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_DysFN,HMMSmart_DysFC	-	no_errors
EPHB1	2047	genome.wustl.edu	37	3	134880927	134880927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	134880927	134880927	G	A	SNP	EPHB1	NM_004441	human	genbank	57_37b	+1	reviewed	missense	c.1490	p.R497Q	0.998	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,superfamily_Fibronectin type III,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
F8	2157	genome.wustl.edu	37	X	154194350	154194350	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	154194350	154194350	T	A	SNP	F8	NM_000132	human	genbank	57_37b	-1	reviewed	silent	c.1338	p.R446	0.086	superfamily_Cupredoxins	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_3,HMMPfam_Cu-oxidase,PatternScan_MULTICOPPER_OXIDASE1,HMMPfam_Cu-oxidase_2,HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1,PatternScan_FA58C_2	-	no_errors
HIRA	7290	genome.wustl.edu	37	22	19349345	19349345	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	19349345	19349345	G	A	SNP	HIRA	NM_003325	human	genbank	57_37b	-1	reviewed	nonsense	c.1885	p.R629*	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_HIRA_B,HMMPfam_Hira	-	no_errors
KIAA1274	27143	genome.wustl.edu	37	10	72298084	72298084	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72298084	72298084	C	T	SNP	KIAA1274	NM_014431	human	genbank	57_37b	+1	validated	missense	c.1372	p.P458S	1.000	NULL	superfamily_SSF52799	-	no_errors
KIRREL	55243	genome.wustl.edu	37	1	158061187	158061187	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158061187	158061187	C	A	SNP	KIRREL	NM_018240	human	genbank	57_37b	+1	validated	missense	c.1312	p.L438M	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_C2-set_2,HMMPfam_I-set	-	no_errors
LOC100287113	0	genome.wustl.edu	37	11	64323714	64323714	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64323714	64323714	G	T	SNP	LOC100287113	XM_002343110	human	genbank	57_37b	-1	model	missense	c.247	p.P83T	0.011	NULL	NULL	-	no_errors
LOC100287742	0	genome.wustl.edu	37	17	39484621	39484621	+	Missense_Mutation	SNP	T	T	C	rs9895247	byCluster;byFrequency;by1000genomes	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39484621	39484621	T	C	SNP	LOC100287742	XM_002343554	human	genbank	57_37b	+1	model	missense	c.565	p.C189R	0.025	NULL	NULL	-	
LOC442132	442132	genome.wustl.edu	37	5	7303661	7303661	+	RNA	SNP	A	A	G	rs11134213	byCluster;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7303661	7303661	A	G	SNP	LOC442132	XR_040018	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.004	-	-	-	
LOC727770	727770	genome.wustl.edu	37	1	142827042	142827042	+	RNA	SNP	T	T	G	rs61572869	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	142827042	142827042	T	G	SNP	LOC727770	XR_037208	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.156	-	-	-	
LYSMD4	145748	genome.wustl.edu	37	15	100271565	100271565	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	100271565	100271565	T	C	SNP	LYSMD4	NM_152449	human	genbank	57_37b	-1	validated	missense	c.257	p.Y86C	0.023	NULL	NULL	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56155572	56155572	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56155572	56155572	G	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.664	p.G222fs	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56155542,56155742])	no_errors
MAPK8IP3	23162	genome.wustl.edu	37	16	1814440	1814440	+	Missense_Mutation	SNP	A	A	G	rs2294619	byCluster;byFrequency;byHapMap;by1000genomes	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	1814440	1814440	A	G	SNP	MAPK8IP3	NM_015133	human	genbank	57_37b	+1	reviewed	missense	c.2257	p.T753A	0.207	NULL	HMMPfam_Jnk-SapK_ap_N,superfamily_WD40 repeat-like	-	
MST1P9	0	genome.wustl.edu	37	1	17084538	17084538	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	17084538	17084538	G	C	SNP	MST1P9	ENST00000455405	human	ensembl	57_37b	-1	known	missense	c.1638	p.F546L	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-	no_errors
MTF1	4520	genome.wustl.edu	37	1	38289483	38289483	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	38289483	38289483	G	A	SNP	MTF1	NM_005955	human	genbank	57_37b	-1	reviewed	missense	c.1070	p.T357I	0.073	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MTMR9	66036	genome.wustl.edu	37	8	11180161	11180162	+	Frame_Shift_Ins	INS	-	-	TT	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11180161	11180162	-	TT	INS	MTMR9	NM_015458	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1514_1515	p.K506fs	1.000:0.993	NULL	superfamily_SSF50729,superfamily_SSF52799,HMMPfam_Myotub-related	-	no_errors
MYOZ1	58529	genome.wustl.edu	37	10	75394240	75394240	+	Splice_Site	SNP	G	G	A	rs113581761	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75394240	75394240	G	A	SNP	MYOZ1	NM_021245	human	genbank	57_37b	-1	provisional	splice_site	c.502+2	e3+2	0.990	-	-	-	
PDE2A	5138	genome.wustl.edu	37	11	72300219	72300219	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	72300219	72300219	G	A	SNP	PDE2A	NM_002599	human	genbank	57_37b	-1	validated	silent	c.939	p.S313	0.981	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065	superfamily_GAF domain-like,HMMPfam_GAF,HMMSmart_SM00065,superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PHEX	5251	genome.wustl.edu	37	X	22245690	22245690	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	22245690	22245690	T	A	SNP	PHEX	NM_000444	human	genbank	57_37b	+1	reviewed	missense	c.2032	p.F678I	0.936	superfamily_SSF55486,HMMPfam_Peptidase_M13	superfamily_SSF55486,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,PatternScan_ZINC_PROTEASE	-	no_errors
POLR3B	55703	genome.wustl.edu	37	12	106820975	106820975	+	Missense_Mutation	SNP	C	C	T	rs118093172	by1000genomes	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	106820975	106820975	C	T	SNP	POLR3B	NM_018082	human	genbank	57_37b	+1	validated	missense	c.1102	p.L368F	1.000	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1	superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase,HMMPfam_RNA_pol_Rpb2_1,HMMPfam_RNA_pol_Rpb2_2,HMMPfam_RNA_pol_Rpb2_3,HMMPfam_RNA_pol_Rpb2_4,HMMPfam_RNA_pol_Rpb2_5,HMMPfam_RNA_pol_Rpb2_6,PatternScan_RNA_POL_BETA,HMMPfam_RNA_pol_Rpb2_7	-	
PRF1	5551	genome.wustl.edu	37	10	72358324	72358324	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	72358324	72358324	G	A	SNP	PRF1	NM_001083116	human	genbank	57_37b	-1	reviewed	missense	c.1153	p.R385W	0.039	NULL	HMMPfam_MACPF,HMMSmart_SM00457,PatternScan_MAC_PERFORIN,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
RGL4	266747	genome.wustl.edu	37	22	24040406	24040406	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	24040406	24040406	G	A	SNP	RGL4	NM_153615	human	genbank	57_37b	+1	provisional	missense	c.1268	p.R423Q	0.068	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors
RPL18AP3	0	genome.wustl.edu	37	12	104659486	104659486	+	RNA	SNP	G	G	A	rs58282277	byFrequency	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104659486	104659486	G	A	SNP	RPL18AP3	NR_001593	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.972	-	-	-	
SCYL1	57410	genome.wustl.edu	37	11	65305349	65305349	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65305349	65305349	C	T	SNP	SCYL1	NM_020680	human	genbank	57_37b	+1	reviewed	nonsense	c.2029	p.Q677*	0.067	NULL	superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
SLC35B2	347734	genome.wustl.edu	37	6	44223035	44223035	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	44223035	44223035	T	G	SNP	SLC35B2	NM_178148	human	genbank	57_37b	-1	validated	missense	c.707	p.E236A	1.000	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE	HMMPfam_UAA,superfamily_Multidrug resistance efflux transporter EmrE,PatternScan_COPPER_BLUE	-	no_errors
TBX3	6926	genome.wustl.edu	37	12	115109800	115109800	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	115109800	115109800	T	-	DEL	TBX3	NM_016569	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2078	p.N693fs	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	(deletion:cds_exon[115109646,115110107])	no_errors
TLR2	7097	genome.wustl.edu	37	4	154624747	154624747	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	154624747	154624747	C	T	SNP	TLR2	NM_003264	human	genbank	57_37b	+1	reviewed	nonsense	c.688	p.R230*	0.683	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_TIR,HMMSmart_TIR,HMMPfam_TIR	-	no_errors
TMOD1	7111	genome.wustl.edu	37	9	100308545	100308545	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	100308545	100308545	C	A	SNP	TMOD1	NM_003275	human	genbank	57_37b	+1	reviewed	missense	c.199	p.L67I	1.000	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_SSF52047	-	no_errors
TRIP11	9321	genome.wustl.edu	37	14	92436128	92436128	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	92436128	92436128	G	A	SNP	TRIP11	NM_004239	human	genbank	57_37b	-1	reviewed	silent	c.5829	p.P1943	0.940	NULL	NULL	-	no_errors
TRPC4	7223	genome.wustl.edu	37	13	38237581	38237581	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	38237581	38237581	A	T	SNP	TRPC4	NM_003306	human	genbank	57_37b	-1	validated	missense	c.1660	p.C554S	1.000	HMMPfam_Ion_trans	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors
UQCRFS1	7386	genome.wustl.edu	37	19	29698494	29698494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	29698494	29698494	C	T	SNP	UQCRFS1	NM_006003	human	genbank	57_37b	-1	validated	silent	c.786	p.T262	0.000	superfamily_Rieske_dom,HMMPfam_Rieske	superfamily_AlphaBeta_subunt,HMMPfam_Ubiq-Cytc-red_N,HMMPfam_UCR_TM,superfamily_UCR_TM_region,superfamily_Rieske_dom,HMMPfam_Rieske	-	no_errors
UXS1	80146	genome.wustl.edu	37	2	106761718	106761718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	106761718	106761718	C	T	SNP	UXS1	NM_025076	human	genbank	57_37b	-1	validated	missense	c.385	p.V129M	1.000	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_Epimerase	-	no_errors
XPOT	11260	genome.wustl.edu	37	12	64818467	64818467	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	64818467	64818467	T	C	SNP	XPOT	NM_007235	human	genbank	57_37b	+1	reviewed	missense	c.1271	p.L424P	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_Xpo1	-	no_errors
ZMYM3	9203	genome.wustl.edu	37	X	70467688	70467691	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	AGTA	AGTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	70467688	70467691	AGTA	-	DEL	ZMYM3	NM_005096	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2044_2041	p.Y681fs	1.000:1.000:1.000:1.000	HMMPfam_zf-FCS,HMMSmart_SM00746	HMMPfam_zf-FCS,HMMSmart_SM00746	(deletion:cds_exon[70467584,70467756])	no_errors
ZNF131	7690	genome.wustl.edu	37	5	43174806	43174806	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	43174806	43174806	A	G	SNP	ZNF131	NM_003432	human	genbank	57_37b	+1	validated	silent	c.1341	p.L447	0.477	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors
ZNF730	0	genome.wustl.edu	37	19	23328432	23328432	+	Missense_Mutation	SNP	A	A	G	rs61744908	byCluster;byFrequency;by1000genomes	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23328432	23328432	A	G	SNP	ZNF730	XM_001719792	human	genbank	57_37b	+1	model	missense	c.712	p.T238A	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF98	148198	genome.wustl.edu	37	19	22586248	22586248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E7-01A-11W-A050-09	TCGA-BH-A0E7-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22586248	22586248	C	T	SNP	ZNF98	NM_001098626	human	genbank	57_37b	-1	validated	missense	c.97	p.A33T	0.004	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
