Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ARMCX2	9823	genome.wustl.edu	37	X	100912411	100912411	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	100912411	100912411	G	C	SNP	ARMCX2	NM_014782	human	genbank	57_37b	-1	reviewed	missense	c.164	p.A55G	0.393	NULL	superfamily_ARM-type_fold,HMMPfam_DUF634	-	no_errors
C3AR1	719	genome.wustl.edu	37	12	8212541	8212541	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	8212541	8212541	G	A	SNP	C3AR1	NM_004054	human	genbank	57_37b	-1	validated	missense	c.241	p.H81Y	0.036	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CACNA1S	779	genome.wustl.edu	37	1	201030559	201030559	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	201030559	201030559	C	T	SNP	CACNA1S	NM_000069	human	genbank	57_37b	-1	reviewed	missense	c.3091	p.V1031M	0.009	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CEP68	23177	genome.wustl.edu	37	2	65299971	65299971	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	65299971	65299971	G	T	SNP	CEP68	NM_015147	human	genbank	57_37b	+1	validated	missense	c.1741	p.G581W	0.001	NULL	superfamily_Spectrin repeat	-	no_errors
COL4A1	1282	genome.wustl.edu	37	13	110845223	110845223	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110845223	110845223	G	A	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	silent	c.1419	p.D473	0.021	NULL	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors
COL6A2	1292	genome.wustl.edu	37	21	47532440	47532440	+	Silent	SNP	C	C	T	rs59531343	byCluster;byFrequency;by1000genomes	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	47532440	47532440	C	T	SNP	COL6A2	NM_001849	human	genbank	57_37b	+1	reviewed	silent	c.663	p.P221	0.000	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Collagen	-	
CPXM1	56265	genome.wustl.edu	37	20	2776476	2776476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	2776476	2776476	G	A	SNP	CPXM1	NM_019609	human	genbank	57_37b	-1	reviewed	missense	c.1489	p.L497F	1.000	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,HMMSmart_SM00631	HMMSmart_SM00231,superfamily_Galactose-binding domain-like,HMMPfam_F5_F8_type_C,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M14,PatternScan_CARBOXYPEPT_ZN_1,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain	-	no_errors
DNMBP	23268	genome.wustl.edu	37	10	101728874	101728874	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	101728874	101728874	C	T	SNP	DNMBP	NM_015221	human	genbank	57_37b	-1	validated	missense	c.266	p.R89Q	1.000	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,HMMSmart_SM00721,HMMPfam_BAR	-	no_errors
ENSG00000243451	0	genome.wustl.edu	37	1	237766440	237766440	+	RNA	SNP	C	A	A	rs79373028	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237766440	237766440	C	A	SNP	ENSG00000243451	ENST00000476674	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.104	-	-	-	
ENSG00000246010	0	genome.wustl.edu	37	7	38829907	38829908	+	RNA	INS	-	-	TCT	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	38829907	38829908	-	TCT	INS	ENSG00000246010	ENST00000500650	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.003:0.000	-	-	-	no_errors
FBN1	2200	genome.wustl.edu	37	15	48757774	48757774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	48757774	48757774	C	T	SNP	FBN1	NM_000138	human	genbank	57_37b	-1	reviewed	missense	c.4933	p.V1645M	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,HMMSmart_SM00179,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_2	HMMSmart_SM00181,HMMPfam_EGF,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_Concanavalin A-like lectins/glucanases,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Growth factor receptor domain	-	no_errors
FFAR3	2865	genome.wustl.edu	37	19	35862846	35862846	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	35862846	35862846	C	A	SNP	FFAR3	ENST00000246538	human	ensembl	57_37b	+1	known	silent	c.585	p.V195	0.854	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FOXN2	3344	genome.wustl.edu	37	2	48600495	48600495	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48600495	48600495	A	C	SNP	FOXN2	NM_002158	human	genbank	57_37b	+1	reviewed	missense	c.768	p.L256F	1.000	NULL	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
KRTAP1-1	81851	genome.wustl.edu	37	17	39197306	39197306	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	39197306	39197306	C	A	SNP	KRTAP1-1	NM_030967	human	genbank	57_37b	-1	reviewed	missense	c.344	p.R115L	0.919	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LOC729900	729900	genome.wustl.edu	37	15	23096921	23096921	+	RNA	SNP	A	A	C	rs4778307	byCluster;by1000genomes	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23096921	23096921	A	C	SNP	LOC729900	XR_037628	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.001	-	-	-	
MALAT1	378938	genome.wustl.edu	37	11	65271072	65271074	+	RNA	DEL	AAT	AAT	-	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	AAT	AAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65271072	65271074	AAT	-	DEL	MALAT1	NR_002819	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.061:0.073:0.070	-	-	(deletion:rna[65265233,65273940])	no_errors
MLPH	79083	genome.wustl.edu	37	2	238449107	238449107	+	Missense_Mutation	SNP	A	A	G	rs2271809	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	238449107	238449107	A	G	SNP	MLPH	ENST00000415753	human	ensembl	57_37b	+1	known	missense	c.283	p.S95G	0.390	NULL	NULL	-	
NEB	4703	genome.wustl.edu	37	2	152432783	152432783	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152432783	152432783	G	T	SNP	NEB	NM_004543	human	genbank	57_37b	-1	reviewed	missense	c.11687	p.A3896D	1.000	HMMSmart_SM00227	HMMSmart_SM00227,HMMPfam_Nebulin,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
NPR1	4881	genome.wustl.edu	37	1	153662393	153662393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	153662393	153662393	C	T	SNP	NPR1	NM_000906	human	genbank	57_37b	+1	validated	missense	c.2869	p.R957C	0.990	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_ANF_RECEPTORS,HMMSmart_SM00219,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
PDE8A	5151	genome.wustl.edu	37	15	85659299	85659299	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85659299	85659299	A	T	SNP	PDE8A	NM_002605	human	genbank	57_37b	+1	validated	missense	c.1484	p.E495V	0.908	superfamily_HD-domain/PDEase-like	HMMPfam_PDE8,HMMPfam_Response_reg,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),superfamily_HD-domain/PDEase-like,HMMSmart_SM00471,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PPIG	9360	genome.wustl.edu	37	2	170493412	170493412	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	170493412	170493412	A	G	SNP	PPIG	NM_004792	human	genbank	57_37b	+1	validated	silent	c.1644	p.E548	1.000	NULL	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1	-	no_errors
PRPF8	10594	genome.wustl.edu	37	17	1564332	1564332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	1564332	1564332	G	A	SNP	PRPF8	NM_006445	human	genbank	57_37b	-1	reviewed	missense	c.4463	p.T1488I	1.000	HMMPfam_U6-snRNA_bdg	HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_RRM_4,HMMPfam_U5_2-snRNA_bdg,HMMPfam_U6-snRNA_bdg,HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PROCT	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89692748	89692785	+	Splice_Site	DEL	TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT	TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT	-	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT	TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	89692748	89692785	TGAGGTTATCTTTTTACCACAGTTGCACAATATCCTTT	-	DEL	PTEN	ENST00000371953	human	ensembl	57_37b	+1	known	splice_site_del	c.254-22_254-1	e5-1	0.217:0.080:0.043:0.021:0.000:0.005:0.003:0.003:0.648:0.691:0.986:0.994:0.995:0.984:0.928:0.001:0.000:0.012:0.161:0.993:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.979:1.000:1.000	-	-	(deletion:intron[89690847,89692769], cds_exon[89692770,89693008])	no_errors
RB1CC1	9821	genome.wustl.edu	37	8	53543057	53543057	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	53543057	53543057	C	T	SNP	RB1CC1	NM_014781	human	genbank	57_37b	-1	reviewed	missense	c.4472	p.R1491K	1.000	HMMPfam_ATG11	superfamily_SSF54236,HMMPfam_ATG11	-	no_errors
SBSN	374897	genome.wustl.edu	37	19	36017756	36017756	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36017756	36017756	C	T	SNP	SBSN	NM_198538	human	genbank	57_37b	-1	validated	silent	c.399	p.A133	0.001	NULL	NULL	-	no_errors
SELT	51714	genome.wustl.edu	37	3	150340928	150340928	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	150340928	150340928	G	T	SNP	SELT	ENST00000361622	human	ensembl	57_37b	+1	known	missense	c.347	p.S116I	1.000	HMMPfam_SelT	HMMPfam_SelT	-	no_errors
SETD2	29072	genome.wustl.edu	37	3	47142959	47142959	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	47142959	47142959	G	C	SNP	SETD2	NM_014159	human	genbank	57_37b	-1	reviewed	missense	c.5004	p.F1668L	0.997	superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317	PatternScan_ADH_IRON_1,superfamily_Ferritin-like,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2	-	no_errors
SLC40A1	30061	genome.wustl.edu	37	2	190430090	190430090	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190430090	190430090	A	G	SNP	SLC40A1	NM_014585	human	genbank	57_37b	-1	reviewed	silent	c.750	p.N250	0.912	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter,HMMPfam_FPN1	-	no_errors
SP100	6672	genome.wustl.edu	37	2	231307660	231307660	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	231307660	231307660	C	T	SNP	SP100	NM_001080391	human	genbank	57_37b	+1	validated	missense	c.116	p.T39M	0.000	NULL	HMMPfam_Sp100,superfamily_SAND domain-like,HMMPfam_SAND,HMMSmart_SM00258,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
TADA2A	6871	genome.wustl.edu	37	17	35837018	35837018	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	35837018	35837018	G	A	SNP	TADA2A	NM_001488	human	genbank	57_37b	+1	reviewed	silent	c.1263	p.K421	1.000	HMMPfam_SWIRM	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding,HMMPfam_SWIRM	-	no_errors
TAS2R16	50833	genome.wustl.edu	37	7	122634847	122634847	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	122634847	122634847	G	A	SNP	TAS2R16	NM_016945	human	genbank	57_37b	-1	reviewed	missense	c.842	p.P281L	0.016	HMMPfam_TAS2R	HMMPfam_TAS2R	-	no_errors
TRMT61B	55006	genome.wustl.edu	37	2	29092602	29092602	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	29092602	29092602	T	-	DEL	TRMT61B	NM_017910	human	genbank	57_37b	-1	validated	frame_shift_del	c.542	p.N181fs	0.713	HMMPfam_GCD14,superfamily_SSF53335	HMMPfam_GCD14,superfamily_SSF53335	(deletion:cds_exon[29092445,29093143])	no_errors
USF1	7391	genome.wustl.edu	37	1	161011928	161011928	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	161011928	161011928	G	C	SNP	USF1	NM_007122	human	genbank	57_37b	-1	reviewed	missense	c.254	p.P85R	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
YLPM1	56252	genome.wustl.edu	37	14	75247171	75247171	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75247171	75247171	C	T	SNP	YLPM1	NM_019589	human	genbank	57_37b	+1	validated	nonsense	c.1174	p.Q392*	1.000	NULL	HMMPfam_YLP,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF688	146542	genome.wustl.edu	37	16	30581301	30581301	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0GZ-01A-11W-A071-09	TCGA-BH-A0GZ-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	30581301	30581301	C	G	SNP	ZNF688	NM_145271	human	genbank	57_37b	-1	validated	missense	c.767	p.R256P	0.200	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
