Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABLIM2	84448	genome.wustl.edu	37	4	8098975	8098975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	8098975	8098975	G	A	SNP	ABLIM2	NM_001130083	human	genbank	57_37b	-1	validated	silent	c.189	p.F63	1.000	HMMSmart_SM00132,HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153	-	no_errors
AHDC1	27245	genome.wustl.edu	37	1	27878126	27878126	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	27878126	27878126	G	A	SNP	AHDC1	NM_001029882	human	genbank	57_37b	-1	validated	silent	c.501	p.F167	1.000	NULL	HMMSmart_AT_hook,HMMPfam_AT_hook	-	no_errors
AHNAK2	113146	genome.wustl.edu	37	14	105420827	105420827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	105420827	105420827	G	A	SNP	AHNAK2	NM_138420	human	genbank	57_37b	-1	validated	missense	c.961	p.R321W	0.000	NULL	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMPfam_Involucrin	-	no_errors
AMBRA1	55626	genome.wustl.edu	37	11	46567261	46567261	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	46567261	46567261	C	T	SNP	AMBRA1	NM_017749	human	genbank	57_37b	-1	validated	silent	c.444	p.T148	1.000	superfamily_WD40_like,HMMSmart_WD40	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ANKRD32	84250	genome.wustl.edu	37	5	94030568	94030568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	94030568	94030568	G	A	SNP	ANKRD32	NM_032290	human	genbank	57_37b	+1	validated	missense	c.2728	p.G910R	0.980	superfamily_ANK	HMMSmart_BRCT,superfamily_BRCT,HMMPfam_BRCT,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
AQP7	364	genome.wustl.edu	37	9	33386975	33386975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	33386975	33386975	C	T	SNP	AQP7	NM_001170	human	genbank	57_37b	-1	reviewed	missense	c.260	p.R87H	0.847	HMMPfam_MIP,superfamily_MIP	PatternScan_MIP,HMMPfam_MIP,superfamily_MIP	-	no_errors
ATG4A	115201	genome.wustl.edu	37	X	107381041	107381041	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107381041	107381041	G	A	SNP	ATG4A	NM_052936	human	genbank	57_37b	+1	reviewed	missense	c.555	p.M185I	1.000	HMMPfam_Peptidase_C54	HMMPfam_Peptidase_C54	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045892	7045906	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	7045892	7045906	CAGCAGCAGCAGCAG	-	DEL	ATN1	NM_001007026	human	genbank	57_37b	+1	reviewed	in_frame_del	c.1462_1476	p.QQQQQ491in_frame_del	0.834:0.709:0.730:0.772:0.719:0.700:0.962:0.955:0.948:0.969:0.915:0.004:0.157:0.124:0.121	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	(deletion:cds_exon[7044710,7046724])	no_errors
ATP13A4	84239	genome.wustl.edu	37	3	193132430	193132430	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	193132430	193132430	G	A	SNP	ATP13A4	NM_032279	human	genbank	57_37b	-1	validated	silent	c.2952	p.A984	0.836	superfamily_Calcium ATPase transmembrane domain M	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_Cation_ATPase_N,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_HAD-like	-	no_errors
ATP2C1	27032	genome.wustl.edu	37	3	130714935	130714935	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	130714935	130714935	C	T	SNP	ATP2C1	NM_001001486	human	genbank	57_37b	+1	reviewed	silent	c.2106	p.F702	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
BRWD3	254065	genome.wustl.edu	37	X	79980464	79980464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	79980464	79980464	G	A	SNP	BRWD3	NM_153252	human	genbank	57_37b	-1	validated	missense	c.1489	p.R497W	0.985	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,HMMSmart_SM00320	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
C10orf120	399814	genome.wustl.edu	37	10	124457606	124457606	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	124457606	124457606	G	A	SNP	C10orf120	NM_001010912	human	genbank	57_37b	-1	predicted	silent	c.651	p.T217	0.000	NULL	NULL	-	no_errors
C17orf53	78995	genome.wustl.edu	37	17	42230004	42230004	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	42230004	42230004	G	C	SNP	C17orf53	NM_024032	human	genbank	57_37b	+1	validated	splice_site	c.1309-1	e5-1	0.875	-	-	-	no_errors
C1orf96	126731	genome.wustl.edu	37	1	229462694	229462694	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	229462694	229462694	C	G	SNP	C1orf96	NM_145257	human	genbank	57_37b	-1	validated	missense	c.427	p.D143H	0.005	NULL	NULL	-	no_errors
C20orf12	55184	genome.wustl.edu	37	20	18374937	18374937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	18374937	18374937	C	T	SNP	C20orf12	NM_001099407	human	genbank	57_37b	-1	validated	missense	c.1669	p.E557K	0.140	NULL	HMMSmart_ZnF_RBZ,HMMSmart_ANK,superfamily_ANK,HMMPfam_Ank	-	no_errors
C2orf89	129293	genome.wustl.edu	37	2	85051114	85051114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	85051114	85051114	G	A	SNP	C2orf89	NM_001080824	human	genbank	57_37b	-1	predicted	missense	c.1150	p.R384W	0.001	NULL	NULL	-	no_errors
C6orf124	653483	genome.wustl.edu	37	6	168226924	168226924	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	168226924	168226924	T	C	SNP	C6orf124	ENST00000357510	human	ensembl	57_37b	-1	known	missense	c.212	p.D71G	0.002	NULL	NULL	-	no_errors
CAMTA1	23261	genome.wustl.edu	37	1	7723467	7723467	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	7723467	7723467	C	G	SNP	CAMTA1	NM_015215	human	genbank	57_37b	+1	validated	missense	c.860	p.S287W	1.000	NULL	HMMPfam_CG-1,superfamily_E set domains,HMMPfam_TIG,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_IQ	-	no_errors
CASC4	113201	genome.wustl.edu	37	15	44581304	44581304	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	44581304	44581304	T	C	SNP	CASC4	NM_138423	human	genbank	57_37b	+1	reviewed	missense	c.77	p.V26A	0.988	NULL	NULL	-	no_errors
CCDC62	84660	genome.wustl.edu	37	12	123285673	123285673	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123285673	123285673	G	C	SNP	CCDC62	NM_201435	human	genbank	57_37b	+1	validated	missense	c.980	p.R327T	1.000	NULL	NULL	-	no_errors
CCDC62	84660	genome.wustl.edu	37	12	123285827	123285827	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123285827	123285827	G	C	SNP	CCDC62	NM_201435	human	genbank	57_37b	+1	validated	missense	c.1134	p.E378D	0.351	NULL	NULL	-	no_errors
CCDC63	160762	genome.wustl.edu	37	12	111319049	111319049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	111319049	111319049	G	A	SNP	CCDC63	NM_152591	human	genbank	57_37b	+1	provisional	missense	c.802	p.V268I	0.201	NULL	NULL	-	no_errors
CNKSR1	10256	genome.wustl.edu	37	1	26507066	26507066	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	26507066	26507066	C	G	SNP	CNKSR1	NM_006314	human	genbank	57_37b	+1	reviewed	missense	c.175	p.L59V	1.000	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,HMMPfam_CRIC_ras_sig,superfamily_PDZ domain-like,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
COL17A1	1308	genome.wustl.edu	37	10	105836073	105836073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	105836073	105836073	C	T	SNP	COL17A1	NM_000494	human	genbank	57_37b	-1	reviewed	missense	c.317	p.R106H	1.000	NULL	HMMPfam_Collagen	-	no_errors
COL3A1	1281	genome.wustl.edu	37	2	189872623	189872623	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189872623	189872623	C	T	SNP	COL3A1	NM_000090	human	genbank	57_37b	+1	reviewed	nonsense	c.3376	p.Q1126*	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
COL3A1	1281	genome.wustl.edu	37	2	189872623	189872623	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	189872623	189872623	C	T	SNP	COL3A1	NM_000090	human	genbank	57_37b	+1	reviewed	nonsense	c.3376	p.Q1126*	1.000	HMMPfam_Collagen	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
CSTF2T	23283	genome.wustl.edu	37	10	53457893	53457893	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	53457893	53457893	C	T	SNP	CSTF2T	NM_015235	human	genbank	57_37b	-1	validated	missense	c.1417	p.G473S	0.242	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
ECEL1	9427	genome.wustl.edu	37	2	233347143	233347143	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233347143	233347143	T	A	SNP	ECEL1	NM_004826	human	genbank	57_37b	-1	validated	missense	c.1781	p.D594V	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13"	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13"	-	no_errors
EIF3K	27335	genome.wustl.edu	37	19	39110987	39110987	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39110987	39110987	G	C	SNP	EIF3K	NM_013234	human	genbank	57_37b	+1	validated	missense	c.70	p.E24Q	1.000	superfamily_ARM repeat,HMMPfam_SAC3_GANP	"superfamily_ARM repeat,HMMPfam_SAC3_GANP,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000207022	0	genome.wustl.edu	37	1	93311661	93311661	+	RNA	SNP	T	T	C	rs12750269	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	93311661	93311661	T	C	SNP	ENSG00000207022	ENST00000384295	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.022	-	-	-	
ENSG00000244767	0	genome.wustl.edu	37	11	58343472	58343472	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58343472	58343472	G	A	SNP	ENSG00000244767	ENST00000500077	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245698	0	genome.wustl.edu	37	3	112252853	112252853	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	112252853	112252853	C	G	SNP	ENSG00000245698	ENST00000501334	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.011	-	-	-	no_errors
ENSG00000246015	0	genome.wustl.edu	37	19	52895545	52895546	+	RNA	INS	-	-	TCTC	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52895545	52895546	-	TCTC	INS	ENSG00000246015	ENST00000500322	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.008:0.008	-	-	-	no_errors
ENSG00000246132	0	genome.wustl.edu	37	17	47688403	47688403	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	47688403	47688403	C	T	SNP	ENSG00000246132	ENST00000500329	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000247972	0	genome.wustl.edu	37	10	43882057	43882057	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43882057	43882057	T	C	SNP	ENSG00000247972	ENST00000500026	human	ensembl	57_37b	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
EWSR1	2130	genome.wustl.edu	37	22	29693913	29693913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	29693913	29693913	G	A	SNP	EWSR1	NM_005243	human	genbank	57_37b	+1	reviewed	missense	c.1391	p.R464K	1.000	superfamily_RNA-binding domain RBD	HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1,superfamily_Znf265 first zinc-finger domain,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1	-	no_errors
FAT4	79633	genome.wustl.edu	37	4	126337775	126337775	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	126337775	126337775	C	G	SNP	FAT4	NM_024582	human	genbank	57_37b	+1	validated	nonsense	c.7016	p.S2339*	0.998	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
FAT4	79633	genome.wustl.edu	37	4	126337775	126337775	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	126337775	126337775	C	G	SNP	FAT4	NM_024582	human	genbank	57_37b	+1	validated	nonsense	c.7016	p.S2339*	0.998	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240255687	240255687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240255687	240255687	C	T	SNP	FMN2	NM_020066	human	genbank	57_37b	+1	validated	missense	c.278	p.S93F	1.000	NULL	HMMSmart_FH2,HMMPfam_Drf_FH1,superfamily_FH2_actin_bd,HMMPfam_FH2	-	no_errors
FOXA1	3169	genome.wustl.edu	37	14	38061461	38061461	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	38061461	38061461	G	C	SNP	FOXA1	NM_004496	human	genbank	57_37b	-1	reviewed	missense	c.528	p.I176M	1.000	HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head	HMMPfam_Fork_head_N,HMMSmart_FH,superfamily_SSF46785,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2,HMMPfam_HNF_C	-	no_errors
FOXD4	2298	genome.wustl.edu	37	9	117998	117998	+	Missense_Mutation	SNP	G	G	T	rs66612967	byCluster;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	117998	117998	G	T	SNP	FOXD4	NM_207305	human	genbank	57_37b	-1	validated	missense	c.122	p.A41E	0.002	NULL	HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2	-	
FSIP2	285135	genome.wustl.edu	37	2	186671695	186671695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	186671695	186671695	G	A	SNP	FSIP2	ENST00000424728	human	ensembl	57_37b	+1	known	missense	c.17662	p.D5888N	0.004	NULL	NULL	-	no_errors
GJA8	2703	genome.wustl.edu	37	1	147381246	147381246	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	147381246	147381246	G	A	SNP	GJA8	NM_005267	human	genbank	57_37b	+1	reviewed	silent	c.1164	p.S388	0.000	NULL	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2,HMMPfam_Connexin50	-	no_errors
GNL3	26354	genome.wustl.edu	37	3	52724624	52724624	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	52724624	52724624	G	A	SNP	GNL3	NM_014366	human	genbank	57_37b	+1	validated	silent	c.558	p.E186	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_GN3L_Grn1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	-	no_errors
GRPR	2925	genome.wustl.edu	37	X	16142101	16142101	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	16142101	16142101	C	G	SNP	GRPR	NM_005314	human	genbank	57_37b	+1	reviewed	missense	c.25	p.L9V	0.030	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GSTA1	2938	genome.wustl.edu	37	6	52661025	52661025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	52661025	52661025	G	A	SNP	GSTA1	NM_145740	human	genbank	57_37b	-1	reviewed	missense	c.227	p.A76V	0.984	superfamily_Thioredoxin-like,HMMPfam_GST_N	superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors
GTPBP8	29083	genome.wustl.edu	37	3	112710112	112710113	+	Frame_Shift_Ins	INS	-	-	CG	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	112710112	112710113	-	CG	INS	GTPBP8	NM_014170	human	genbank	57_37b	+1	validated	frame_shift_ins	c.266_267	p.E89fs	0.000:0.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_MMR_HSR1	-	no_errors
HEATR7A	0	genome.wustl.edu	37	8	145246717	145246717	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145246717	145246717	G	A	SNP	HEATR7A	NM_032450	human	genbank	57_37b	+1	provisional	missense	c.814	p.A272T	0.002	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
HIST1H3B	8358	genome.wustl.edu	37	6	26031883	26031884	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26031883	26031884	CT	-	DEL	HIST1H3B	NM_003537	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.406_405	p.R135fs	1.000:0.999	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	(deletion:cds_exon[26031878,26032288])	no_errors
HIST1H3B	8358	genome.wustl.edu	37	6	26031883	26031884	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	26031883	26031884	CT	-	DEL	HIST1H3B	NM_003537	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.406_405	p.R135fs	1.000:0.999	superfamily_Histone-fold,HMMSmart_SM00428	superfamily_Histone-fold,PatternScan_HISTONE_H3_1,HMMSmart_SM00428,HMMPfam_Histone,PatternScan_HISTONE_H3_2	(deletion:cds_exon[26031878,26032288])	no_errors
HMP19	51617	genome.wustl.edu	37	5	173534476	173534476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	173534476	173534476	G	A	SNP	HMP19	NM_015980	human	genbank	57_37b	+1	provisional	missense	c.484	p.E162K	1.000	HMMPfam_Calcyon	HMMPfam_Calcyon	-	no_errors
HOXC6	3223	genome.wustl.edu	37	12	54422370	54422370	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	54422370	54422370	C	T	SNP	HOXC6	NM_004503	human	genbank	57_37b	+1	reviewed	missense	c.65	p.P22L	1.000	NULL	PatternScan_ANTENNAPEDIA,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
HSP90AB4P	664618	genome.wustl.edu	37	15	58983795	58983795	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	58983795	58983795	G	T	SNP	HSP90AB4P	ENST00000380522	human	ensembl	57_37b	-1	known	missense	c.1025	p.S342Y	1.000	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90	superfamily_ATP_bd_ATPase,HMMPfam_HATPase_c,HMMSmart_HATPase_c,HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942	-	no_errors
HTR3E	285242	genome.wustl.edu	37	3	183823927	183823927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	183823927	183823927	G	A	SNP	HTR3E	NM_182589	human	genbank	57_37b	+1	reviewed	missense	c.982	p.A328T	0.998	superfamily_Neu_channel_TM	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
IQCB1	9657	genome.wustl.edu	37	3	121527844	121527844	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	121527844	121527844	C	G	SNP	IQCB1	NM_001023570	human	genbank	57_37b	-1	reviewed	missense	c.406	p.D136H	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00015,HMMPfam_IQ	-	no_errors
IRS4	8471	genome.wustl.edu	37	X	107976114	107976114	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	107976114	107976114	C	G	SNP	IRS4	NM_003604	human	genbank	57_37b	-1	reviewed	missense	c.3461	p.G1154A	0.101	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI	-	no_errors
ITGA1	3672	genome.wustl.edu	37	5	52216230	52216230	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	52216230	52216230	G	C	SNP	ITGA1	NM_181501	human	genbank	57_37b	+1	reviewed	missense	c.2224	p.E742Q	1.000	HMMPfam_Integrin_alpha2,superfamily_SSF69179	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA	-	no_errors
ITGAX	3687	genome.wustl.edu	37	16	31371302	31371302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	31371302	31371302	G	A	SNP	ITGAX	NM_000887	human	genbank	57_37b	+1	reviewed	missense	c.623	p.R208H	0.000	superfamily_SSF69318,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	superfamily_SSF69318,HMMSmart_Int_alpha,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_SSF69179,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
ITPKB	3707	genome.wustl.edu	37	1	226924884	226924885	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	226924884	226924885	-	CCA	INS	ITPKB	NM_002221	human	genbank	57_37b	-1	reviewed	in_frame_ins	c.276_275	p.93in_frame_insG	0.091:0.097	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
KANK4	163782	genome.wustl.edu	37	1	62738879	62738879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	62738879	62738879	C	T	SNP	KANK4	NM_181712	human	genbank	57_37b	-1	validated	missense	c.1897	p.V633M	0.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
KCTD18	130535	genome.wustl.edu	37	2	201357979	201357979	+	Missense_Mutation	SNP	A	A	C	rs112932012	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	201357979	201357979	A	C	SNP	KCTD18	NM_152387	human	genbank	57_37b	-1	validated	missense	c.680	p.V227G	1.000	NULL	superfamily_POZ domain,HMMPfam_K_tetra	-	
KDM5C	8242	genome.wustl.edu	37	X	53222444	53222444	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	53222444	53222444	A	C	SNP	KDM5C	NM_004187	human	genbank	57_37b	-1	reviewed	missense	c.4388	p.V1463G	1.000	NULL	HMMSmart_SM00545,HMMPfam_JmjN,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-C5HC2,HMMPfam_PLU-1	-	no_errors
KIAA1210	57481	genome.wustl.edu	37	X	118284464	118284464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118284464	118284464	G	A	SNP	KIAA1210	NM_020721	human	genbank	57_37b	-1	validated	missense	c.79	p.H27Y	0.000	NULL	NULL	-	no_errors
KIF21B	23046	genome.wustl.edu	37	1	200973964	200973964	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200973964	200973964	G	A	SNP	KIF21B	NM_017596	human	genbank	57_37b	-1	provisional	missense	c.830	p.S277L	1.000	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
KLRAQ1	129285	genome.wustl.edu	37	2	48722823	48722823	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48722823	48722823	C	T	SNP	KLRAQ1	NM_001135629	human	genbank	57_37b	+1	validated	silent	c.1605	p.L535	0.001	HMMPfam_TTKRSYEDQ	HMMPfam_KLRAQ,HMMPfam_TTKRSYEDQ	-	no_errors
LAP3	51056	genome.wustl.edu	37	4	17585131	17585131	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	17585131	17585131	G	A	SNP	LAP3	NM_015907	human	genbank	57_37b	+1	validated	silent	c.405	p.L135	1.000	superfamily_Macro domain-like,HMMPfam_Peptidase_M17_N	superfamily_Macro domain-like,HMMPfam_Peptidase_M17_N,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M17,PatternScan_CYTOSOL_AP	-	no_errors
LCE2D	353141	genome.wustl.edu	37	1	152636817	152636817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152636817	152636817	G	A	SNP	LCE2D	NM_178430	human	genbank	57_37b	+1	validated	missense	c.236	p.R79H	0.000	NULL	NULL	-	no_errors
LOC100288750	0	genome.wustl.edu	37	10	42608915	42608915	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42608915	42608915	G	A	SNP	LOC100288750	XM_002342981	human	genbank	57_37b	-1	model	missense	c.107	p.P36L	0.205	NULL	NULL	-	no_errors
LOC256374	256374	genome.wustl.edu	37	3	138363214	138363214	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	138363214	138363214	C	T	SNP	LOC256374	XM_170597	human	genbank	57_37b	-1	model	missense	c.311	p.G104E	0.998	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase	superfamily_Cyclophilin-like,HMMPfam_Pro_isomerase	-	no_errors
LOC441120	441120	genome.wustl.edu	37	5	1597919	1597920	+	RNA	INS	-	-	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	1597919	1597920	-	T	INS	LOC441120	XR_078998	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.010:0.005	-	-	-	no_errors
LOC644422	644422	genome.wustl.edu	37	17	16521084	16521084	+	RNA	SNP	C	T	T	rs3813762	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16521084	16521084	C	T	SNP	LOC644422	XR_017541	human	genbank	57_37b	-1	model	rna	NULL	NULL	1.000	-	-	-	
LOC653061	653061	genome.wustl.edu	37	15	23605389	23605389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	23605389	23605389	G	A	SNP	LOC653061	XM_002343324	human	genbank	57_37b	+1	model	missense	c.614	p.R205H	0.094	NULL	NULL	-	no_errors
MAMDC2	256691	genome.wustl.edu	37	9	72723278	72723278	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	72723278	72723278	G	A	SNP	MAMDC2	NM_153267	human	genbank	57_37b	+1	validated	silent	c.300	p.L100	1.000	HMMSmart_SM00137,HMMPfam_MAM	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1	-	no_errors
MAN1A2	10905	genome.wustl.edu	37	1	117944862	117944862	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117944862	117944862	G	A	SNP	MAN1A2	NM_006699	human	genbank	57_37b	+1	validated	silent	c.357	p.L119	0.990	NULL	superfamily_Glyco_hydro_47,HMMPfam_Glyco_hydro_47	-	no_errors
MC4R	4160	genome.wustl.edu	37	18	58039364	58039364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	58039364	58039364	C	T	SNP	MC4R	NM_005912	human	genbank	57_37b	-1	reviewed	silent	c.219	p.K73	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MGMT	4255	genome.wustl.edu	37	10	131557478	131557478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	131557478	131557478	G	A	SNP	MGMT	NM_002412	human	genbank	57_37b	+1	validated	missense	c.380	p.R127K	0.812	superfamily_MethylDNA_cys_mtrans_DNA_bd,HMMPfam_DNA_binding_1	HMMPfam_Methyltransf_1N,superfamily_SSF53155,PatternScan_THIOL_PROTEASE_HIS,superfamily_MethylDNA_cys_mtrans_DNA_bd,HMMPfam_DNA_binding_1,PatternScan_MGMT	-	no_errors
MLL2	8085	genome.wustl.edu	37	12	49428419	49428419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	49428419	49428419	G	A	SNP	MLL2	NM_003482	human	genbank	57_37b	-1	validated	silent	c.10386	p.L3462	0.998	NULL	superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMSmart_SM00184,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_RECOMBINASES_2,HMMSmart_SM00398,superfamily_HMG-box,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
MTA2	9219	genome.wustl.edu	37	11	62363528	62363528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62363528	62363528	C	T	SNP	MTA2	NM_004739	human	genbank	57_37b	-1	reviewed	missense	c.1068	p.M356I	1.000	superfamily_SSF57716	PatternScan_GATA_ZN_FINGER_1,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_SSF57716,HMMSmart_ZnF_GATA,HMMPfam_GATA	-	no_errors
MYH9	4627	genome.wustl.edu	37	22	36689510	36689512	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36689510	36689512	CTC	-	DEL	MYH9	NM_002473	human	genbank	57_37b	-1	reviewed	in_frame_del	c.3960_3958	p.E1320in_frame_del	1.000:1.000:1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS	(deletion:cds_exon[36689375,36689527])	no_errors
MYH9	4627	genome.wustl.edu	37	22	36689510	36689512	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	36689510	36689512	CTC	-	DEL	MYH9	NM_002473	human	genbank	57_37b	-1	reviewed	in_frame_del	c.3960_3958	p.E1320in_frame_del	1.000:1.000:1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1,superfamily_Regulator of G-protein signaling RGS	(deletion:cds_exon[36689375,36689527])	no_errors
MYO10	4651	genome.wustl.edu	37	5	16761623	16761623	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	16761623	16761623	C	T	SNP	MYO10	NM_012334	human	genbank	57_37b	-1	validated	silent	c.1689	p.K563	1.000	superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head	PatternScan_FERM_1,PatternScan_FERM_2,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMSmart_MyTH4,HMMPfam_MyTH4,HMMSmart_B41,HMMPfam_RA,superfamily_FERM_3-hlx,HMMPfam_FERM_M	-	no_errors
NRXN3	9369	genome.wustl.edu	37	14	79111725	79111725	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	79111725	79111725	C	T	SNP	NRXN3	ENST00000330071	human	ensembl	57_37b	+1	known	silent	c.303	p.N101	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,superfamily_EGF/Laminin	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228494790	228494790	+	Missense_Mutation	SNP	G	G	A	rs435776	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228494790	228494790	G	A	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.12115	p.G4039R	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	
OCEL1	79629	genome.wustl.edu	37	19	17339695	17339695	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17339695	17339695	C	T	SNP	OCEL1	NM_024578	human	genbank	57_37b	+1	provisional	silent	c.756	p.F252	0.002	HMMPfam_Occludin_ELL	HMMPfam_Occludin_ELL	-	no_errors
ORC3L	23595	genome.wustl.edu	37	6	88313147	88313147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	88313147	88313147	G	A	SNP	ORC3L	NM_181837	human	genbank	57_37b	+1	reviewed	missense	c.223	p.E75K	0.997	HMMPfam_ORC3_N	HMMPfam_ORC3_N	-	no_errors
PCDHB9	56127	genome.wustl.edu	37	5	140568869	140568869	+	Silent	SNP	G	G	T	rs613907	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140568869	140568869	G	T	SNP	PCDHB9	NM_019119	human	genbank	57_37b	+1	reviewed	silent	c.1977	p.T659	0.952	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	
PDK2	5164	genome.wustl.edu	37	17	48174889	48174889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48174889	48174889	G	A	SNP	PDK2	NM_002611	human	genbank	57_37b	+1	provisional	missense	c.221	p.R74Q	1.000	superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3	superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain,HMMPfam_BCDHK_Adom3,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HATPase_c,HMMSmart_SM00387	-	no_errors
PDXDC1	23042	genome.wustl.edu	37	16	15095675	15095675	+	Silent	SNP	C	C	A	rs76337710	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	15095675	15095675	C	A	SNP	PDXDC1	NM_015027	human	genbank	57_37b	+1	validated	silent	c.204	p.L68	0.820	superfamily_PLP-dependent transferases	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	-	
PDZD7	79955	genome.wustl.edu	37	10	102783366	102783366	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	102783366	102783366	C	G	SNP	PDZD7	NM_024895	human	genbank	57_37b	-1	provisional	missense	c.369	p.E123D	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
PELP1	27043	genome.wustl.edu	37	17	4594696	4594696	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4594696	4594696	T	A	SNP	PELP1	NM_014389	human	genbank	57_37b	-1	validated	silent	c.291	p.A97	0.955	HMMPfam_NUC201	HMMPfam_NUC201,HMMPfam_NUC202	-	no_errors
PI4K2A	55361	genome.wustl.edu	37	10	99410715	99410715	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99410715	99410715	C	T	SNP	PI4K2A	NM_018425	human	genbank	57_37b	+1	provisional	silent	c.453	p.F151	1.000	superfamily_SSF56399,HMMPfam_PI3_PI4_kinase	PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF56399,HMMPfam_PI3_PI4_kinase	-	no_errors
PLA2G4F	255189	genome.wustl.edu	37	15	42439376	42439376	+	Silent	SNP	G	G	A	rs4923929	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42439376	42439376	G	A	SNP	PLA2G4F	NM_213600	human	genbank	57_37b	-1	validated	silent	c.1365	p.S455	0.000	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	-	
POLN	353497	genome.wustl.edu	37	4	2172878	2172878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	2172878	2172878	G	A	SNP	POLN	NM_181808	human	genbank	57_37b	-1	validated	missense	c.1405	p.H469Y	1.000	superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A	superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_A,HMMSmart_SM00482	-	no_errors
PRIM1	5557	genome.wustl.edu	37	12	57133140	57133140	+	Silent	SNP	T	T	G	rs1131514	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57133140	57133140	T	G	SNP	PRIM1	NM_000946	human	genbank	57_37b	-1	reviewed	silent	c.990	p.I330	1.000	superfamily_SSF56747,HMMPfam_DNA_primase_S	superfamily_SSF56747,HMMPfam_DNA_primase_S	-	
PROX1	5629	genome.wustl.edu	37	1	214171121	214171121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	214171121	214171121	G	A	SNP	PROX1	NM_002763	human	genbank	57_37b	+1	provisional	missense	c.1243	p.V415I	1.000	HMMPfam_Prox1	HMMPfam_Prox1,superfamily_Homeodomain_like	-	no_errors
RABL2B	11158	genome.wustl.edu	37	22	51207261	51207261	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	51207261	51207261	C	G	SNP	RABL2B	NM_001130923	human	genbank	57_37b	-1	reviewed	missense	c.660	p.Q220H	0.770	HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
RASSF5	83593	genome.wustl.edu	37	1	206730957	206730957	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206730957	206730957	A	-	DEL	RASSF5	NM_182665	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.56	p.D20fs	0.992	NULL	HMMSmart_RA,HMMPfam_RA	(deletion:cds_exon[206730902,206731021])	no_errors
RASSF5	83593	genome.wustl.edu	37	1	206730957	206730957	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	206730957	206730957	A	-	DEL	RASSF5	NM_182665	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.56	p.D20fs	0.992	NULL	HMMSmart_RA,HMMPfam_RA	(deletion:cds_exon[206730902,206731021])	no_errors
RHCG	51458	genome.wustl.edu	37	15	90020416	90020416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	90020416	90020416	A	T	SNP	RHCG	NM_016321	human	genbank	57_37b	-1	provisional	missense	c.1134	p.F378L	0.404	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)	-	no_errors
RHPN2	85415	genome.wustl.edu	37	19	33470935	33470935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	33470935	33470935	G	A	SNP	RHPN2	NM_033103	human	genbank	57_37b	-1	reviewed	silent	c.2028	p.F676	1.000	NULL	superfamily_PKN_effector,HMMSmart_Hr1,HMMPfam_HR1,HMMPfam_BRO1,superfamily_PDZ,HMMSmart_PDZ	-	no_errors
RNLS	55328	genome.wustl.edu	37	10	90341439	90341439	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	90341439	90341439	G	A	SNP	RNLS	NM_001031709	human	genbank	57_37b	-1	validated	silent	c.252	p.G84	0.002	superfamily_FAD/NAD(P)-binding domain	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain	-	no_errors
RNPS1	10921	genome.wustl.edu	37	16	2313111	2313111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	2313111	2313111	C	T	SNP	RNPS1	NM_006711	human	genbank	57_37b	-1	reviewed	silent	c.405	p.R135	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
SLCO2B1	11309	genome.wustl.edu	37	11	74880255	74880255	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	74880255	74880255	G	T	SNP	SLCO2B1	NM_007256	human	genbank	57_37b	+1	validated	silent	c.486	p.L162	0.136	superfamily_MFS general substrate transporter,HMMPfam_OATP	superfamily_MFS general substrate transporter,HMMPfam_OATP	-	no_errors
SLIT3	6586	genome.wustl.edu	37	5	168310287	168310287	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	168310287	168310287	G	A	SNP	SLIT3	NM_003062	human	genbank	57_37b	-1	validated	silent	c.468	p.I156	0.996	superfamily_L domain-like,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00369	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00368,HMMSmart_SM00082,HMMPfam_LRRCT,superfamily_RNI-like,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
SNORD115-20	0	genome.wustl.edu	37	15	25451417	25451417	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	25451417	25451417	G	A	SNP	SNORD115-20	NR_003312	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.207	-	-	-	no_errors
SNX5	27131	genome.wustl.edu	37	20	17934762	17934762	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17934762	17934762	C	A	SNP	SNX5	NM_014426	human	genbank	57_37b	-1	reviewed	splice_site	c.268-1	e4-1	1.000	-	-	-	no_errors
SSBP3	23648	genome.wustl.edu	37	1	54704821	54704821	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	54704821	54704821	G	T	SNP	SSBP3	NM_145716	human	genbank	57_37b	-1	validated	missense	c.908	p.P303H	1.000	HMMPfam_SSDP	HMMSmart_SM00667,HMMPfam_SSDP	-	no_errors
STAM2	10254	genome.wustl.edu	37	2	152982824	152982824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	152982824	152982824	C	T	SNP	STAM2	NM_005843	human	genbank	57_37b	-1	reviewed	silent	c.1095	p.V365	1.000	NULL	HMMPfam_VHS,superfamily_ENTH/VHS domain,HMMSmart_SM00288,HMMPfam_UIM,HMMSmart_SM00726,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64457239	64457239	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	64457239	64457239	C	T	SNP	SYNE2	NM_182914	human	genbank	57_37b	+1	reviewed	silent	c.2424	p.L808	0.094	NULL	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,superfamily_Spectrin,HMMSmart_SPEC,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH	-	no_errors
TEKT3	64518	genome.wustl.edu	37	17	15234729	15234729	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15234729	15234729	G	A	SNP	TEKT3	NM_031898	human	genbank	57_37b	-1	reviewed	silent	c.174	p.V58	0.005	NULL	HMMPfam_Tektin	-	no_errors
TFAP4	7023	genome.wustl.edu	37	16	4310234	4310234	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	4310234	4310234	G	A	SNP	TFAP4	NM_003223	human	genbank	57_37b	-1	validated	missense	c.679	p.P227S	1.000	NULL	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
TINAG	27283	genome.wustl.edu	37	6	54173424	54173424	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	54173424	54173424	C	T	SNP	TINAG	NM_014464	human	genbank	57_37b	+1	validated	nonsense	c.76	p.Q26*	0.004	NULL	HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
TINAG	27283	genome.wustl.edu	37	6	54173424	54173424	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	54173424	54173424	C	T	SNP	TINAG	NM_014464	human	genbank	57_37b	+1	validated	nonsense	c.76	p.Q26*	0.004	NULL	HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
TOX4	9878	genome.wustl.edu	37	14	21964747	21964747	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	21964747	21964747	G	A	SNP	TOX4	NM_014828	human	genbank	57_37b	+1	validated	missense	c.1849	p.V617M	0.998	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
TRIM65	201292	genome.wustl.edu	37	17	73887324	73887324	+	Missense_Mutation	SNP	C	C	T	rs34593741	byCluster;byFrequency;by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	73887324	73887324	C	T	SNP	TRIM65	NM_173547	human	genbank	57_37b	-1	validated	missense	c.1090	p.G364R	0.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	
TRYX3	136541	genome.wustl.edu	37	7	141952311	141952311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	141952311	141952311	C	T	SNP	TRYX3	NM_001001317	human	genbank	57_37b	-1	reviewed	missense	c.557	p.G186E	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	PatternScan_TRYPSIN_SER,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS	-	no_errors
TUFT1	7286	genome.wustl.edu	37	1	151536442	151536442	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	151536442	151536442	G	A	SNP	TUFT1	NM_020127	human	genbank	57_37b	+1	validated	silent	c.300	p.K100	1.000	NULL	NULL	-	no_errors
TXN	7295	genome.wustl.edu	37	9	113006463	113006463	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	113006463	113006463	C	T	SNP	TXN	NM_003329	human	genbank	57_37b	-1	validated	missense	c.292	p.E98K	1.000	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
UBP1	7342	genome.wustl.edu	37	3	33434910	33434910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33434910	33434910	G	A	SNP	UBP1	NM_001128161	human	genbank	57_37b	-1	validated	missense	c.1427	p.S476L	1.000	NULL	HMMPfam_CP2,superfamily_SAM/Pointed domain	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103274157	103274157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103274157	103274157	C	T	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	missense	c.7828	p.E2610K	1.000	superfamily_HECT,HMMSmart_HECTc,HMMPfam_HECT	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
UTRN	7402	genome.wustl.edu	37	6	144784000	144784000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	144784000	144784000	G	A	SNP	UTRN	NM_007124	human	genbank	57_37b	+1	reviewed	missense	c.3064	p.E1022K	1.000	HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC	superfamily_Calponin-homology,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_CH,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin,HMMSmart_SPEC,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1	-	no_errors
VPS13B	157680	genome.wustl.edu	37	8	100205158	100205158	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	100205158	100205158	C	G	SNP	VPS13B	NM_017890	human	genbank	57_37b	+1	reviewed	silent	c.2388	p.L796	0.999	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
WNT3A	89780	genome.wustl.edu	37	1	228210498	228210498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228210498	228210498	G	A	SNP	WNT3A	NM_033131	human	genbank	57_37b	+1	reviewed	missense	c.202	p.E68K	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
ZBTB10	65986	genome.wustl.edu	37	8	81399907	81399907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	81399907	81399907	C	T	SNP	ZBTB10	NM_001105539	human	genbank	57_37b	+1	validated	missense	c.862	p.P288S	0.989	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZFAND1	79752	genome.wustl.edu	37	8	82629498	82629498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	82629498	82629498	G	A	SNP	ZFAND1	NM_024699	human	genbank	57_37b	-1	validated	missense	c.124	p.H42Y	1.000	HMMSmart_SM00154,HMMPfam_zf-AN1	HMMSmart_SM00154,HMMPfam_zf-AN1	-	no_errors
ZNFX1	57169	genome.wustl.edu	37	20	47864113	47864113	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	47864113	47864113	C	T	SNP	ZNFX1	NM_021035	human	genbank	57_37b	-1	validated	silent	c.5448	p.L1816	0.997	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_zf-NF-X1,HMMSmart_SM00438	-	no_errors
ZSCAN16	80345	genome.wustl.edu	37	6	28093465	28093465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	28093465	28093465	G	A	SNP	ZSCAN16	NM_025231	human	genbank	57_37b	+1	provisional	missense	c.244	p.D82N	1.000	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
