Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
C17orf49	124944	genome.wustl.edu	37	17	6920583	6920583	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	6920583	6920583	G	A	SNP	C17orf49	NM_001142798	human	genbank	57_37b	+1	validated	silent	c.522	p.L174	1.000	NULL	NULL	-	no_errors
CDS1	1040	genome.wustl.edu	37	4	85530598	85530598	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	85530598	85530598	A	G	SNP	CDS1	NM_001263	human	genbank	57_37b	+1	reviewed	missense	c.262	p.I88V	1.000	HMMPfam_CTP_transf_1	HMMPfam_CTP_transf_1,PatternScan_CDS	-	no_errors
CRNKL1	51340	genome.wustl.edu	37	20	20023120	20023120	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	20023120	20023120	C	T	SNP	CRNKL1	NM_016652	human	genbank	57_37b	-1	reviewed	missense	c.1496	p.R499H	1.000	superfamily_TPR-like	HMMPfam_HAT,HMMSmart_SM00386,superfamily_TPR-like	-	no_errors
ENSG00000245982	0	genome.wustl.edu	37	16	84600388	84600388	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	84600388	84600388	G	A	SNP	ENSG00000245982	ENST00000499573	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
FDFT1	2222	genome.wustl.edu	37	8	11679310	11679310	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	11679310	11679310	G	A	SNP	FDFT1	NM_004462	human	genbank	57_37b	+1	reviewed	missense	c.433	p.D145N	1.000	superfamily_Terpenoid synthases,HMMPfam_SQS_PSY	superfamily_Terpenoid synthases,HMMPfam_SQS_PSY,PatternScan_SQUALEN_PHYTOEN_SYN_1,PatternScan_SQUALEN_PHYTOEN_SYN_2	-	no_errors
GPR144	347088	genome.wustl.edu	37	9	127230042	127230042	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	127230042	127230042	G	T	SNP	GPR144	ENST00000334810	human	ensembl	57_37b	+1	known	missense	c.1990	p.V664L	0.962	HMMPfam_7tm_2	PatternScan_PENTAXIN,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_ConA_like_lec_gl,HMMPfam_Pentaxin,HMMSmart_GPS,HMMPfam_GPS,HMMPfam_7tm_2	-	no_errors
IGSF3	3321	genome.wustl.edu	37	1	117127361	117127361	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	117127361	117127361	G	T	SNP	IGSF3	NM_001542	human	genbank	57_37b	-1	validated	nonsense	c.2814	p.C938*	1.000	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig	-	no_errors
IQCH	64799	genome.wustl.edu	37	15	67664804	67664804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	67664804	67664804	C	T	SNP	IQCH	NM_001031715	human	genbank	57_37b	+1	validated	missense	c.1109	p.S370L	0.000	HMMPfam_IQ	HMMPfam_IQ	-	no_errors
MAPKAP1	79109	genome.wustl.edu	37	9	128347966	128347966	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	128347966	128347966	T	C	SNP	MAPKAP1	NM_001006617	human	genbank	57_37b	-1	reviewed	missense	c.539	p.Y180C	1.000	HMMPfam_SIN1	HMMPfam_SIN1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
MAST1	22983	genome.wustl.edu	37	19	12976829	12976829	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12976829	12976829	C	T	SNP	MAST1	NM_014975	human	genbank	57_37b	+1	validated	nonsense	c.1942	p.R648*	0.595	superfamily_Kinase_like,HMMSmart_S_TK_X	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151859912	151859912	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	151859912	151859912	C	T	SNP	MLL3	NM_170606	human	genbank	57_37b	-1	reviewed	missense	c.10750	p.G3584R	0.963	NULL	PatternScan_HMGI_Y,HMMPfam_AT_hook,HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,HMMPfam_PHD,HMMSmart_SM00184,PatternScan_ZF_PHD_1,PatternScan_ATPASE_ALPHA_BETA,HMMSmart_SM00398,HMMPfam_HMG_box,HMMPfam_FYRN,HMMSmart_SM00541,HMMPfam_FYRC,HMMSmart_SM00542,superfamily_SET domain,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00508	-	no_errors
PLA2G4E	123745	genome.wustl.edu	37	15	42292345	42292345	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42292345	42292345	G	T	SNP	PLA2G4E	NM_001080490	human	genbank	57_37b	-1	provisional	missense	c.722	p.S241Y	0.978	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	-	no_errors
PRAMEF7	441871	genome.wustl.edu	37	1	12980075	12980075	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12980075	12980075	G	T	SNP	PRAMEF7	NM_001012277	human	genbank	57_37b	+1	provisional	missense	c.1267	p.A423S	0.000	superfamily_RNI-like	superfamily_RNI-like	-	no_errors
RAB35	11021	genome.wustl.edu	37	12	120536642	120536642	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120536642	120536642	G	A	SNP	RAB35	NM_006861	human	genbank	57_37b	-1	validated	silent	c.450	p.S150	0.980	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00177,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
TM9SF2	9375	genome.wustl.edu	37	13	100190011	100190011	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	100190011	100190011	G	C	SNP	TM9SF2	NM_004800	human	genbank	57_37b	+1	provisional	missense	c.610	p.D204H	1.000	HMMPfam_EMP70	HMMPfam_EMP70	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179419673	179419673	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	179419673	179419673	G	A	SNP	TTN	ENST00000356127	human	ensembl	57_37b	-1	known	missense	c.80803	p.R26935C	0.996	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
VDAC2	7417	genome.wustl.edu	37	10	76979101	76979101	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	76979101	76979101	T	A	SNP	VDAC2	NM_003375	human	genbank	57_37b	+1	provisional	missense	c.343	p.S115T	1.000	HMMPfam_Porin_3	HMMPfam_Porin_3,PatternScan_EUKARYOTIC_PORIN	-	no_errors
WDR62	284403	genome.wustl.edu	37	19	36582103	36582103	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36582103	36582103	T	G	SNP	WDR62	NM_001083961	human	genbank	57_37b	+1	validated	missense	c.2036	p.V679G	1.000	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
ZC3H13	23091	genome.wustl.edu	37	13	46616352	46616352	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	46616352	46616352	C	A	SNP	ZC3H13	NM_015070	human	genbank	57_37b	-1	validated	missense	c.286	p.V96L	1.000	NULL	superfamily_SSF90229,HMMSmart_ZnF_C3H1,HMMPfam_zf-CCCH	-	no_errors
