Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACE	1636	genome.wustl.edu	37	17	61558968	61558968	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61558968	61558968	C	A	SNP	ACE	NM_000789	human	genbank	57_37b	+1	reviewed	missense	c.987	p.F329L	1.000	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain,PatternScan_ZINC_PROTEASE"	-	no_errors
ALPP	250	genome.wustl.edu	37	2	233244601	233244601	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	233244601	233244601	G	T	SNP	ALPP	NM_001632	human	genbank	57_37b	+1	reviewed	silent	c.612	p.G204	0.999	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc	superfamily_Alkaline_phosphatase_core,HMMPfam_Alk_phosphatase,HMMSmart_alkPPc,PatternScan_ALKALINE_PHOSPHATASE	-	no_errors
AMBP	259	genome.wustl.edu	37	9	116840414	116840414	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116840414	116840414	G	C	SNP	AMBP	NM_001633	human	genbank	57_37b	-1	reviewed	missense	c.76	p.P26A	0.001	superfamily_Calycin	superfamily_Calycin,PatternScan_LIPOCALIN,HMMPfam_Lipocalin,superfamily_Prot_inh_Kunz-m,HMMSmart_KU,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
APOLD1	81575	genome.wustl.edu	37	12	12940449	12940449	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	12940449	12940449	G	A	SNP	APOLD1	NM_001130415	human	genbank	57_37b	+1	validated	missense	c.703	p.E235K	0.997	NULL	NULL	-	no_errors
AQPEP	0	genome.wustl.edu	37	5	115298977	115298977	+	Silent	SNP	C	T	T	rs1445708	byCluster;byFrequency;bySubmitter;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	115298977	115298977	C	T	SNP	AQPEP	NM_173800	human	genbank	57_37b	+1	validated	silent	c.663	p.F221	0.990	superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1	"superfamily_Leukotriene A4 hydrolase N-terminal domain,HMMPfam_Peptidase_M1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	
ASH1L	55870	genome.wustl.edu	37	1	155451186	155451186	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155451186	155451186	T	G	SNP	ASH1L	NM_018489	human	genbank	57_37b	-1	reviewed	missense	c.1475	p.K492T	1.000	NULL	HMMSmart_SM00384,HMMPfam_AT_hook,superfamily_SET domain,HMMSmart_SM00570,HMMPfam_SET,HMMSmart_SM00317,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160047807	160047807	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160047807	160047807	C	T	SNP	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	missense	c.1963	p.V655M	0.000	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
C17orf107	0	genome.wustl.edu	37	17	4803317	4803317	+	Silent	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4803317	4803317	G	A	SNP	C17orf107	NM_001145536	human	genbank	57_37b	+1	predicted	silent	c.153	p.L51	0.006	NULL	NULL	-	no_errors
C1orf43	25912	genome.wustl.edu	37	1	154185071	154185071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	154185071	154185071	G	A	SNP	C1orf43	NM_001098616	human	genbank	57_37b	-1	validated	missense	c.370	p.P124S	1.000	HMMPfam_NICE-3	HMMPfam_NICE-3	-	no_errors
C2orf51	200523	genome.wustl.edu	37	2	88828895	88828901	+	Frame_Shift_Del	DEL	GCTACCT	GCTACCT	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GCTACCT	GCTACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	88828895	88828901	GCTACCT	-	DEL	C2orf51	NM_152670	human	genbank	57_37b	+1	validated	frame_shift_del	c.446_452	p.L151fs	1.000:1.000:0.995:0.975:0.689:0.042:0.042	NULL	NULL	(deletion:cds_exon[88828570,88828992])	no_errors
CLK3	1198	genome.wustl.edu	37	15	74914837	74914837	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74914837	74914837	G	A	SNP	CLK3	NM_001130028	human	genbank	57_37b	+1	reviewed	missense	c.913	p.E305K	1.000	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
COL16A1	1307	genome.wustl.edu	37	1	32122636	32122636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	32122636	32122636	C	T	SNP	COL16A1	NM_001856	human	genbank	57_37b	-1	reviewed	missense	c.4054	p.E1352K	1.000	HMMPfam_Collagen	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
CRTAC1	55118	genome.wustl.edu	37	10	99655714	99655714	+	Silent	SNP	G	A	A	rs34404296	byCluster;byFrequency	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99655714	99655714	G	A	SNP	CRTAC1	NM_018058	human	genbank	57_37b	-1	validated	silent	c.1245	p.D415	0.999	superfamily_Integrin alpha N-terminal domain	superfamily_Integrin alpha N-terminal domain,HMMPfam_FG-GAP,HMMPfam_UnbV_ASPIC,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179	-	
CSPG4	1464	genome.wustl.edu	37	15	75980799	75980823	+	Frame_Shift_Del	DEL	GACTGCCTCTGAGGCACGTGCTGTG	GACTGCCTCTGAGGCACGTGCTGTG	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GACTGCCTCTGAGGCACGTGCTGTG	GACTGCCTCTGAGGCACGTGCTGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	75980799	75980823	GACTGCCTCTGAGGCACGTGCTGTG	-	DEL	CSPG4	NM_001897	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.2607_2583	p.T862fs	0.000:0.000:0.000:0.000:0.018:0.039:0.084:0.063:0.029:0.000:0.003:0.002:0.003:0.003:0.003:0.005:0.900:0.873:0.000:0.000:0.000:0.000:0.972:0.986:0.987	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	(deletion:cds_exon[75979617,75983153])	no_errors
CUBN	8029	genome.wustl.edu	37	10	17126407	17126407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	17126407	17126407	G	A	SNP	CUBN	NM_001081	human	genbank	57_37b	-1	reviewed	missense	c.2164	p.P722S	0.998	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_EGF_2,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
CYB5A	1528	genome.wustl.edu	37	18	71959066	71959066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	71959066	71959066	C	T	SNP	CYB5A	NM_148923	human	genbank	57_37b	-1	validated	silent	c.45	p.E15	0.955	superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5	superfamily_Cytochrome b5-like heme/steroid binding domain,HMMPfam_Cyt-b5,PatternScan_CYTOCHROME_B5_1	-	no_errors
DCC	1630	genome.wustl.edu	37	18	50278518	50278518	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	50278518	50278518	C	T	SNP	DCC	NM_005215	human	genbank	57_37b	+1	reviewed	silent	c.186	p.S62	0.874	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_Neogenin_C	-	no_errors
DDX17	10521	genome.wustl.edu	37	22	38888051	38888051	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	38888051	38888051	C	G	SNP	DDX17	ENST00000415456	human	ensembl	57_37b	-1	known	missense	c.1220	p.R407T	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
DSE	29940	genome.wustl.edu	37	6	116757537	116757537	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	116757537	116757537	C	T	SNP	DSE	NM_001080976	human	genbank	57_37b	+1	reviewed	missense	c.1906	p.P636S	1.000	NULL	NULL	-	no_errors
ELL2	22936	genome.wustl.edu	37	5	95226942	95226942	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	95226942	95226942	C	G	SNP	ELL2	NM_012081	human	genbank	57_37b	-1	validated	missense	c.1626	p.Q542H	1.000	HMMPfam_Occludin_ELL	HMMPfam_ELL,HMMPfam_Occludin_ELL	-	no_errors
ENSG00000247484	0	genome.wustl.edu	37	11	67777082	67777082	+	RNA	SNP	C	C	A	rs2010404	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67777082	67777082	C	A	SNP	ENSG00000247484	ENST00000499964	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.009	-	-	-	
FAM105B	90268	genome.wustl.edu	37	5	14687728	14687728	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	14687728	14687728	A	G	SNP	FAM105B	NM_138348	human	genbank	57_37b	+1	validated	silent	c.567	p.K189	0.998	NULL	NULL	-	no_errors
FNBP4	23360	genome.wustl.edu	37	11	47753007	47753007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47753007	47753007	C	T	SNP	FNBP4	NM_015308	human	genbank	57_37b	-1	validated	missense	c.1927	p.D643N	0.997	NULL	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1	-	no_errors
GPR12	2835	genome.wustl.edu	37	13	27333003	27333003	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	27333003	27333003	G	A	SNP	GPR12	NM_005288	human	genbank	57_37b	-1	validated	missense	c.962	p.P321L	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
HAUS5	23354	genome.wustl.edu	37	19	36109508	36109508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36109508	36109508	G	A	SNP	HAUS5	NM_015302	human	genbank	57_37b	+1	validated	missense	c.923	p.R308Q	0.989	NULL	NULL	-	no_errors
HGD	3081	genome.wustl.edu	37	3	120394696	120394696	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	120394696	120394696	A	C	SNP	HGD	NM_000187	human	genbank	57_37b	-1	reviewed	missense	c.30	p.F10L	0.998	superfamily_RmlC-like cupins,HMMPfam_HgmA	superfamily_RmlC-like cupins,HMMPfam_HgmA	-	no_errors
HMBS	3145	genome.wustl.edu	37	11	118963868	118963868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118963868	118963868	C	T	SNP	HMBS	NM_000190	human	genbank	57_37b	+1	reviewed	missense	c.961	p.R321C	0.029	superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain,HMMPfam_Porphobil_deamC	superfamily_Periplasmic binding protein-like II,HMMPfam_Porphobil_deam,superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain,HMMPfam_Porphobil_deamC,PatternScan_PORPHOBILINOGEN_DEAM	-	no_errors
HTATSF1	27336	genome.wustl.edu	37	X	135593486	135593486	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	135593486	135593486	G	A	SNP	HTATSF1	NM_014500	human	genbank	57_37b	+1	reviewed	missense	c.1582	p.E528K	0.003	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
KCNQ3	3786	genome.wustl.edu	37	8	133186503	133186503	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133186503	133186503	A	T	SNP	KCNQ3	NM_004519	human	genbank	57_37b	-1	reviewed	missense	c.1027	p.F343I	1.000	superfamily_SSF81324,HMMPfam_Ion_trans	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36841609	36841609	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36841609	36841609	A	-	DEL	KIAA1755	NM_001029864	human	genbank	57_37b	-1	predicted	frame_shift_del	c.3438	p.D1147fs	0.000	NULL	superfamily_Spectrin repeat	(deletion:cds_exon[36841444,36842145])	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36841611	36841623	+	Frame_Shift_Del	DEL	GCAGCTTGTGGGA	GCAGCTTGTGGGA	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GCAGCTTGTGGGA	GCAGCTTGTGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36841611	36841623	GCAGCTTGTGGGA	-	DEL	KIAA1755	NM_001029864	human	genbank	57_37b	-1	predicted	frame_shift_del	c.3436_3424	p.S1142fs	0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	NULL	superfamily_Spectrin repeat	(deletion:cds_exon[36841444,36842145])	no_errors
KIF1B	23095	genome.wustl.edu	37	1	10397180	10397180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	10397180	10397180	G	A	SNP	KIF1B	NM_015074	human	genbank	57_37b	+1	reviewed	missense	c.3040	p.E1014K	1.000	NULL	HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
KLHDC7B	113730	genome.wustl.edu	37	22	50988193	50988193	+	Missense_Mutation	SNP	A	G	G	rs131779	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	50988193	50988193	A	G	SNP	KLHDC7B	NM_138433	human	genbank	57_37b	+1	validated	missense	c.1598	p.H533R	0.980	superfamily_Galactose oxidase central domain	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	
LOC100287788	0	genome.wustl.edu	37	2	74605024	74605024	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	74605024	74605024	G	C	SNP	LOC100287788	XM_002342212	human	genbank	57_37b	+1	model	splice_site	c.766-1	e9-1	0.000	-	-	-	no_errors
LOC100289482	0	genome.wustl.edu	37	X	79277953	79277953	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	79277953	79277953	G	T	SNP	LOC100289482	XM_002343832	human	genbank	57_37b	-1	model	missense	c.86	p.A29E	0.000	NULL	NULL	-	no_errors
MAP3K11	4296	genome.wustl.edu	37	11	65374961	65374961	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	65374961	65374961	C	T	SNP	MAP3K11	NM_002419	human	genbank	57_37b	-1	reviewed	silent	c.1269	p.E423	1.000	NULL	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_Kinase_like,HMMSmart_TyrKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MED8	112950	genome.wustl.edu	37	1	43852271	43852271	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	43852271	43852271	G	C	SNP	MED8	NM_052877	human	genbank	57_37b	-1	reviewed	nonsense	c.482	p.S161*	1.000	HMMPfam_Arc32	HMMPfam_Arc32	-	no_errors
MMP16	4325	genome.wustl.edu	37	8	89130939	89130939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	89130939	89130939	C	T	SNP	MMP16	NM_005941	human	genbank	57_37b	-1	reviewed	silent	c.861	p.Q287	1.000	"HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10"	"superfamily_PGBD-like,HMMPfam_PG_binding_1,PatternScan_CYSTEINE_SWITCH,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Peptidase_M10,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN"	-	no_errors
MMRN1	22915	genome.wustl.edu	37	4	90856574	90856574	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	90856574	90856574	G	A	SNP	MMRN1	NM_007351	human	genbank	57_37b	+1	reviewed	silent	c.1743	p.L581	0.663	NULL	HMMPfam_EMI,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
MON1B	22879	genome.wustl.edu	37	16	77227443	77227443	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	77227443	77227443	G	C	SNP	MON1B	NM_014940	human	genbank	57_37b	+1	validated	missense	c.244	p.E82Q	0.203	NULL	HMMPfam_Mon1	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1251029	1251053	+	In_Frame_Del	DEL	CAGCTCCTGGTACTTATGAGCCCAC	CAGCTCCTGGTACTTATGAGCCCAC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	CAGCTCCTGGTACTTATGAGCCCAC	CAGCTCCTGGTACTTATGAGCCCAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1251029	1251053	CAGCTCCTGGTACTTATGAGCCCAC	-	DEL	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	in_frame_del	c.1221_1229	p.SSC408in_frame_del	0.893:0.283:0.283:0.255:0.390:0.855:0.940:0.998:1.000	HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	(deletion:cds_exon[1250920,1251037], intron[1251038,1251234])	no_errors
MYH1	4619	genome.wustl.edu	37	17	10399833	10399833	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10399833	10399833	G	A	SNP	MYH1	NM_005963	human	genbank	57_37b	-1	reviewed	missense	c.4690	p.R1564C	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
NOBOX	135935	genome.wustl.edu	37	7	144097327	144097327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	144097327	144097327	G	A	SNP	NOBOX	NM_001080413	human	genbank	57_37b	-1	provisional	missense	c.923	p.T308M	0.016	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
OR52H1	390067	genome.wustl.edu	37	11	5566050	5566050	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5566050	5566050	C	-	DEL	OR52H1	NM_001005289	human	genbank	57_37b	-1	provisional	frame_shift_del	c.704	p.G235fs	0.137	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	(deletion:cds_exon[5565791,5566753])	no_errors
OR5I1	10798	genome.wustl.edu	37	11	55703513	55703513	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55703513	55703513	A	T	SNP	OR5I1	NM_006637	human	genbank	57_37b	-1	reviewed	missense	c.364	p.Y122N	0.638	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR8G5	219865	genome.wustl.edu	37	11	124135016	124135016	+	Silent	SNP	C	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124135016	124135016	C	T	SNP	OR8G5	NM_001005198	human	genbank	57_37b	+1	provisional	silent	c.294	p.L98	0.570	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PAK7	57144	genome.wustl.edu	37	20	9546864	9546864	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	9546864	9546864	G	C	SNP	PAK7	NM_020341	human	genbank	57_37b	-1	reviewed	silent	c.1158	p.P386	0.000	NULL	PatternScan_PROTEIN_KINASE_ST,HMMPfam_PBD,HMMSmart_PBD,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
PAN2	9924	genome.wustl.edu	37	12	56713711	56713711	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	56713711	56713711	C	T	SNP	PAN2	NM_001127460	human	genbank	57_37b	-1	reviewed	silent	c.2895	p.L965	1.000	superfamily_Ribonuclease H-like	superfamily_WD40 repeat-like,superfamily_Cysteine proteinases,HMMPfam_UCH,superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	-	no_errors
PCDH11X	27328	genome.wustl.edu	37	X	91873742	91873742	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	91873742	91873742	G	A	SNP	PCDH11X	NM_032968	human	genbank	57_37b	+1	reviewed	missense	c.3847	p.V1283M	0.972	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Protocadherin	-	no_errors
PCDHA5	56143	genome.wustl.edu	37	5	140203381	140203381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140203381	140203381	C	T	SNP	PCDHA5	NM_018908	human	genbank	57_37b	+1	reviewed	missense	c.2021	p.A674V	0.008	HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PHF14	9678	genome.wustl.edu	37	7	11022484	11022484	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	11022484	11022484	C	T	SNP	PHF14	ENST00000303905	human	ensembl	57_37b	+1	known	silent	c.598	p.L200	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_RING	-	no_errors
PLEC	0	genome.wustl.edu	37	8	144997236	144997236	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	144997236	144997236	G	A	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	silent	c.7272	p.A2424	0.959	NULL	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
PLOD3	8985	genome.wustl.edu	37	7	100861229	100861229	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100861229	100861229	C	G	SNP	PLOD3	ENST00000431945	human	ensembl	57_37b	-1	known	missense	c.22	p.V8L	0.000	NULL	NULL	-	no_errors
POLB	5423	genome.wustl.edu	37	8	42207581	42207591	+	In_Frame_Del	DEL	TGGGTAAGAAC	TGGGTAAGAAC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	TGGGTAAGAAC	TGGGTAAGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	42207581	42207591	TGGGTAAGAAC	-	DEL	POLB	NM_002690	human	genbank	57_37b	+1	provisional	in_frame_del	c.318_320	p.G107in_frame_del	0.997:1.000:1.000	HMMSmart_POLXc,superfamily_DNA_pol_lambd_fingers_domain,HMMPfam_DNA_pol_lambd_f,HMMSmart_HhH1	superfamily_DNApol_B_N_like,HMMSmart_POLXc,HMMSmart_HhH1,superfamily_DNA_pol_lambd_fingers_domain,HMMPfam_DNA_pol_lambd_f,superfamily_SSF81301,PatternScan_DNA_POLYMERASE_X	(deletion:cds_exon[42207525,42207583], intron[42207584,42210036])	no_errors
PREPL	9581	genome.wustl.edu	37	2	44565657	44565657	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	44565657	44565657	C	G	SNP	PREPL	NM_006036	human	genbank	57_37b	-1	reviewed	missense	c.988	p.D330H	0.672	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain	HMMPfam_Peptidase_S9_N,superfamily_Prolyl oligopeptidase N-terminal domain,superfamily_alpha/beta-Hydrolases,HMMPfam_Peptidase_S9	-	no_errors
RELN	5649	genome.wustl.edu	37	7	103214731	103214731	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	103214731	103214731	C	A	SNP	RELN	NM_005045	human	genbank	57_37b	-1	reviewed	missense	c.4319	p.C1440F	1.000	HMMSmart_EGF,PatternScan_EGF_2	HMMPfam_Reeler,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Sialidase	-	no_errors
RFX3	5991	genome.wustl.edu	37	9	3293227	3293227	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	3293227	3293227	G	C	SNP	RFX3	NM_134428	human	genbank	57_37b	-1	reviewed	missense	c.581	p.A194G	1.000	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
RYR1	6261	genome.wustl.edu	37	19	38954480	38954480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38954480	38954480	G	A	SNP	RYR1	NM_000540	human	genbank	57_37b	+1	reviewed	missense	c.2776	p.E926K	1.000	HMMPfam_RyR	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SCARNA9	0	genome.wustl.edu	37	11	93454832	93454835	+	RNA	DEL	GTGT	GTGT	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GTGT	GTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	93454832	93454835	GTGT	-	DEL	SCARNA9	NR_002569	human	genbank	57_37b	+1	provisional	rna	NULL	NULL	0.007:0.008:0.006:0.000	-	-	(deletion:rna[93454680,93455032])	no_errors
SLC12A7	10723	genome.wustl.edu	37	5	1075597	1075597	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	1075597	1075597	G	C	SNP	SLC12A7	NM_006598	human	genbank	57_37b	-1	validated	missense	c.1856	p.S619C	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
SLC25A32	81034	genome.wustl.edu	37	8	104412655	104412655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	104412655	104412655	C	T	SNP	SLC25A32	NM_030780	human	genbank	57_37b	-1	validated	missense	c.932	p.R311K	0.998	HMMPfam_Mito_carr	HMMPfam_Mito_carr,superfamily_Mitoch_carrier	-	no_errors
SLCO4C1	353189	genome.wustl.edu	37	5	101631639	101631639	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	101631639	101631639	G	A	SNP	SLCO4C1	NM_180991	human	genbank	57_37b	-1	validated	missense	c.328	p.H110Y	0.063	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895,HMMPfam_Kazal_2	-	no_errors
SOX5	6660	genome.wustl.edu	37	12	23887621	23887621	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	23887621	23887621	G	A	SNP	SOX5	NM_006940	human	genbank	57_37b	-1	reviewed	silent	c.807	p.I269	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
SSX2IP	117178	genome.wustl.edu	37	1	85136470	85136470	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	85136470	85136470	T	C	SNP	SSX2IP	NM_014021	human	genbank	57_37b	-1	reviewed	silent	c.72	p.S24	1.000	NULL	NULL	-	no_errors
STX5	6811	genome.wustl.edu	37	11	62595056	62595056	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62595056	62595056	G	A	SNP	STX5	NM_003164	human	genbank	57_37b	-1	validated	silent	c.273	p.R91	1.000	superfamily_t-snare proteins,HMMPfam_Syntaxin	superfamily_t-snare proteins,HMMPfam_Syntaxin,HMMSmart_SM00397,HMMPfam_SNARE,PatternScan_SYNTAXIN	-	no_errors
TBKBP1	9755	genome.wustl.edu	37	17	45785815	45785815	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	45785815	45785815	G	T	SNP	TBKBP1	NM_014726	human	genbank	57_37b	+1	validated	nonsense	c.928	p.E310*	1.000	NULL	NULL	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578503	7578518	+	Frame_Shift_Del	DEL	CAGGGCAGGTCTTGGC	CAGGGCAGGTCTTGGC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	CAGGGCAGGTCTTGGC	CAGGGCAGGTCTTGGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578503	7578518	CAGGGCAGGTCTTGGC	-	DEL	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.427_412	p.A138fs	0.828:0.010:0.998:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.924:1.000:1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	(deletion:cds_exon[7578371,7578554])	no_errors
TRIM48	79097	genome.wustl.edu	37	11	55032759	55032759	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	55032759	55032759	G	A	SNP	TRIM48	NM_024114	human	genbank	57_37b	+1	validated	missense	c.428	p.C143Y	0.981	HMMPfam_zf-B_box,HMMSmart_SM00336	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,HMMPfam_zf-B_box,HMMSmart_SM00336	-	no_errors
TRIM5	85363	genome.wustl.edu	37	11	5701072	5701083	+	In_Frame_Del	DEL	GACCTTCCCGTC	GACCTTCCCGTC	-	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	GACCTTCCCGTC	GACCTTCCCGTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5701072	5701083	GACCTTCCCGTC	-	DEL	TRIM5	NM_033034	human	genbank	57_37b	-1	reviewed	in_frame_del	c.336_325	p.DGKV109in_frame_del	0.899:0.694:0.020:0.019:0.015:0.009:0.000:0.000:0.001:0.077:0.995:1.000	HMMPfam_zf-B_box,HMMSmart_SM00336	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	(deletion:cds_exon[5700991,5701407])	no_errors
TRPC4	7223	genome.wustl.edu	37	13	38229311	38229311	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	38229311	38229311	T	A	SNP	TRPC4	NM_003306	human	genbank	57_37b	-1	validated	missense	c.1798	p.M600L	1.000	HMMPfam_Ion_trans	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_TRP_2,HMMPfam_Ion_trans,PatternScan_RIBOSOMAL_S2_1	-	no_errors
TSEN2	80746	genome.wustl.edu	37	3	12558155	12558155	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	12558155	12558155	G	C	SNP	TSEN2	NM_001145392	human	genbank	57_37b	+1	reviewed	missense	c.955	p.E319Q	0.997	HMMPfam_tRNA_int_endo_N	HMMPfam_tRNA_int_endo_N,superfamily_tRNA-intron endonuclease catalytic domain-like,HMMPfam_tRNA_int_endo	-	no_errors
TTK	7272	genome.wustl.edu	37	6	80746293	80746293	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	80746293	80746293	A	G	SNP	TTK	NM_003318	human	genbank	57_37b	+1	reviewed	missense	c.2026	p.T676A	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
UNC93B5	0	genome.wustl.edu	37	11	67483428	67483428	+	Missense_Mutation	SNP	C	C	T	rs6591284	byCluster;by2Hit2Allele	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	67483428	67483428	C	T	SNP	UNC93B5	ENST00000332844	human	ensembl	57_37b	-1	known	missense	c.49	p.V17M	0.132	NULL	NULL	-	
VPS13A	23230	genome.wustl.edu	37	9	79827929	79827929	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79827929	79827929	G	C	SNP	VPS13A	NM_033305	human	genbank	57_37b	+1	reviewed	missense	c.600	p.E200D	1.000	NULL	HMMPfam_DUF1162	-	no_errors
ZC3H7B	23264	genome.wustl.edu	37	22	41734248	41734248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	41734248	41734248	G	A	SNP	ZC3H7B	ENST00000396532	human	ensembl	57_37b	+1	known	missense	c.343	p.G115R	0.003	NULL	NULL	-	no_errors
ZNF41	7592	genome.wustl.edu	37	X	47308385	47308385	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47308385	47308385	G	C	SNP	ZNF41	NM_007130	human	genbank	57_37b	-1	reviewed	missense	c.784	p.Q262E	0.772	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF488	118738	genome.wustl.edu	37	10	48371106	48371106	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	48371106	48371106	C	A	SNP	ZNF488	NM_153034	human	genbank	57_37b	+1	provisional	missense	c.574	p.L192M	0.824	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ZNF512B	57473	genome.wustl.edu	37	20	62592679	62592679	+	Silent	SNP	G	A	A	rs112150897	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62592679	62592679	G	A	SNP	ZNF512B	NM_020713	human	genbank	57_37b	-1	provisional	silent	c.2410	p.L804	1.000	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF560	147741	genome.wustl.edu	37	19	9577519	9577519	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A13Y-01A-11D-A10Y-09	TCGA-D8-A13Y-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9577519	9577519	G	A	SNP	ZNF560	NM_152476	human	genbank	57_37b	-1	validated	missense	c.2104	p.R702C	0.227	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
