Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADORA3	140	genome.wustl.edu	37	1	112031583	112031583	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	112031583	112031583	C	T	SNP	ADORA3	NM_020683	human	genbank	57_37b	-1	reviewed	missense	c.521	p.C174Y	0.991	HMMPfam_7tm_1,superfamily_SSF48726	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF48726	-	no_errors
AKAP4	8852	genome.wustl.edu	37	X	49958079	49958079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49958079	49958079	G	A	SNP	AKAP4	NM_003886	human	genbank	57_37b	-1	reviewed	missense	c.1285	p.R429C	0.950	HMMSmart_SM00807,HMMPfam_AKAP_110	HMMSmart_SM00807,HMMPfam_RII_binding_1,HMMPfam_AKAP_110	-	no_errors
APOB	338	genome.wustl.edu	37	2	21228741	21228743	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	21228741	21228743	CTT	-	DEL	APOB	NM_000384	human	genbank	57_37b	-1	reviewed	in_frame_del	c.10999_10997	p.E3666in_frame_del	1.000:0.999:1.000	NULL	superfamily_Lipovitellin-phosvitin complex beta-sheet shell regions,HMMPfam_Vitellogenin_N,HMMSmart_SM00638,superfamily_Lipovitellin-phosvitin complex superhelical domain,HMMPfam_DUF1943,HMMPfam_DUF1081	(deletion:cds_exon[21227952,21235523])	no_errors
ATP13A1	57130	genome.wustl.edu	37	19	19766177	19766177	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19766177	19766177	G	T	SNP	ATP13A1	NM_020410	human	genbank	57_37b	-1	validated	silent	c.1482	p.P494	1.000	NULL	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_errors
BICC1	80114	genome.wustl.edu	37	10	60560727	60560727	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	60560727	60560727	A	T	SNP	BICC1	NM_001080512	human	genbank	57_37b	+1	reviewed	missense	c.1936	p.M646L	1.000	NULL	HMMSmart_SM00322,superfamily_Eukaryotic type KH-domain (KH-domain type I),HMMPfam_KH_1,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_SAM/Pointed domain	-	no_errors
BMP2K	55589	genome.wustl.edu	37	4	79832817	79832817	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	79832817	79832817	C	A	SNP	BMP2K	NM_198892	human	genbank	57_37b	+1	reviewed	nonsense	c.3116	p.S1039*	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
BMS1	9790	genome.wustl.edu	37	10	43326387	43326387	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	43326387	43326387	T	A	SNP	BMS1	NM_014753	human	genbank	57_37b	+1	reviewed	missense	c.3692	p.L1231Q	0.956	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AARP2CN,HMMSmart_SM00785,HMMPfam_DUF663	-	no_errors
C17orf64	124773	genome.wustl.edu	37	17	58503620	58503620	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	58503620	58503620	C	A	SNP	C17orf64	NM_181707	human	genbank	57_37b	+1	validated	missense	c.252	p.S84R	1.000	NULL	NULL	-	no_errors
C1orf114	57821	genome.wustl.edu	37	1	169364427	169364427	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	169364427	169364427	C	T	SNP	C1orf114	NM_021179	human	genbank	57_37b	-1	predicted	missense	c.1385	p.R462Q	0.891	NULL	NULL	-	no_errors
C3orf52	79669	genome.wustl.edu	37	3	111831902	111831902	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	111831902	111831902	G	T	SNP	C3orf52	NM_024616	human	genbank	57_37b	+1	validated	missense	c.559	p.V187L	1.000	NULL	NULL	-	no_errors
CALB2	794	genome.wustl.edu	37	16	71408680	71408682	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	71408680	71408682	GAA	-	DEL	CALB2	NM_001740	human	genbank	57_37b	+1	reviewed	in_frame_del	c.204_206	p.K69in_frame_del	1.000:1.000:1.000	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	(deletion:cds_exon[71408648,71408737])	no_errors
CAP1	10487	genome.wustl.edu	37	1	40530205	40530205	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40530205	40530205	C	G	SNP	CAP1	NM_001105530	human	genbank	57_37b	+1	reviewed	missense	c.498	p.N166K	1.000	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP	HMMPfam_CAP_N,PatternScan_CAP_1,superfamily_N-terminal domain of adenylylcyclase associated protein CAP,HMMPfam_CAP_C,superfamily_C-terminal domain of adenylylcyclase associated protein,HMMSmart_SM00673,PatternScan_CAP_2	-	no_errors
DHCR7	1717	genome.wustl.edu	37	11	71146691	71146691	+	Silent	SNP	A	A	G	rs760241	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	71146691	71146691	A	G	SNP	DHCR7	NM_001360	human	genbank	57_37b	-1	reviewed	silent	c.1158	p.D386	0.072	HMMPfam_ERG4_ERG24	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2	-	
DSCAM	1826	genome.wustl.edu	37	21	41559154	41559154	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41559154	41559154	C	G	SNP	DSCAM	NM_001389	human	genbank	57_37b	-1	validated	missense	c.2683	p.D895H	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
ENSG00000246367	0	genome.wustl.edu	37	7	64465502	64465502	+	RNA	SNP	G	G	A	rs7806567	byCluster;byFrequency;by1000genomes	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	64465502	64465502	G	A	SNP	ENSG00000246367	ENST00000501303	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.004	-	-	-	
FAM40A	85369	genome.wustl.edu	37	1	110590491	110590492	+	Frame_Shift_Ins	INS	-	-	GTGA	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	110590491	110590492	-	GTGA	INS	FAM40A	NM_033088	human	genbank	57_37b	+1	validated	frame_shift_ins	c.1661_1662	p.T555fs	1.000:1.000	NULL	HMMPfam_N1221	-	no_errors
FDXR	2232	genome.wustl.edu	37	17	72860220	72860220	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72860220	72860220	G	C	SNP	FDXR	ENST00000455107	human	ensembl	57_37b	-1	known	missense	c.920	p.P307R	0.000	NULL	superfamily_FAD/NAD(P)-binding domain	-	no_errors
FGD5	152273	genome.wustl.edu	37	3	14860967	14860967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	14860967	14860967	C	T	SNP	FGD5	NM_152536	human	genbank	57_37b	+1	validated	missense	c.389	p.A130V	0.000	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1	-	no_errors
GPR133	283383	genome.wustl.edu	37	12	131488811	131488811	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	131488811	131488811	C	T	SNP	GPR133	NM_198827	human	genbank	57_37b	+1	validated	nonsense	c.1225	p.Q409*	0.106	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
IREB2	3658	genome.wustl.edu	37	15	78768612	78768612	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	78768612	78768612	C	G	SNP	IREB2	NM_004136	human	genbank	57_37b	+1	validated	missense	c.1106	p.T369S	1.000	superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase	superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase,HMMPfam_Aconitase_C	-	no_errors
KIF26B	55083	genome.wustl.edu	37	1	245772787	245772787	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	245772787	245772787	C	T	SNP	KIF26B	NM_018012	human	genbank	57_37b	+1	provisional	missense	c.1871	p.S624F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin	-	no_errors
LOC100289119	0	genome.wustl.edu	37	19	36297501	36297501	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	36297501	36297501	A	G	SNP	LOC100289119	XM_002343676	human	genbank	57_37b	+1	model	silent	c.597	p.L199	0.746	NULL	NULL	-	no_errors
LOC729866	729866	genome.wustl.edu	37	1	157894853	157894853	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	157894853	157894853	G	A	SNP	LOC729866	XR_078238	human	genbank	57_37b	-1	model	rna	NULL	NULL	0.016	-	-	-	no_errors
LRFN4	78999	genome.wustl.edu	37	11	66626234	66626234	+	Missense_Mutation	SNP	T	T	C	rs3741194	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66626234	66626234	T	C	SNP	LRFN4	NM_024036	human	genbank	57_37b	+1	validated	missense	c.1019	p.V340A	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	
LRP1B	53353	genome.wustl.edu	37	2	141130589	141130589	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	141130589	141130589	T	G	SNP	LRP1B	NM_018557	human	genbank	57_37b	-1	validated	missense	c.10756	p.S3586R	1.000	HMMPfam_Ldl_recept_a,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,PatternScan_LDLRA_1	superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,HMMPfam_EGF,HMMPfam_NHL,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors
MAST1	22983	genome.wustl.edu	37	19	12980054	12980054	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	12980054	12980054	C	A	SNP	MAST1	NM_014975	human	genbank	57_37b	+1	validated	missense	c.2948	p.A983D	1.000	superfamily_PDZ,HMMSmart_PDZ	PatternScan_PROTEIN_KINASE_ATP,HMMPfam_DUF1908,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ	-	no_errors
MUC12	10071	genome.wustl.edu	37	7	100642025	100642026	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100642025	100642026	CA	-	DEL	MUC12	ENST00000379442	human	ensembl	57_37b	+1	known	frame_shift_del	c.8610_8611	p.T2871fs	0.001:0.002	NULL	PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SEA,HMMSmart_SEA	(deletion:cds_exon[100633866,100648800])	no_errors
MYH13	8735	genome.wustl.edu	37	17	10219317	10219317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10219317	10219317	G	A	SNP	MYH13	NM_003802	human	genbank	57_37b	-1	validated	missense	c.3764	p.T1255M	0.739	HMMPfam_Myosin_tail_1,superfamily_Prefoldin	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MYH7B	57644	genome.wustl.edu	37	20	33577577	33577577	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	33577577	33577577	G	T	SNP	MYH7B	NM_020884	human	genbank	57_37b	+1	validated	missense	c.1748	p.C583F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,PatternScan_THIOL_PROTEASE_HIS,superfamily_tRNA-binding arm,HMMPfam_Myosin_tail_1,superfamily_Prefoldin	-	no_errors
NAA15	0	genome.wustl.edu	37	4	140280938	140280938	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	140280938	140280938	G	A	SNP	NAA15	NM_057175	human	genbank	57_37b	+1	validated	silent	c.1299	p.E433	0.997	superfamily_TPR-like,HMMSmart_SM00028	superfamily_TPR-like,HMMSmart_SM00028,HMMPfam_TPR_2	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228556454	228556454	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228556454	228556454	G	T	SNP	OBSCN	NM_001098623	human	genbank	57_37b	+1	reviewed	missense	c.19799	p.R6600L	0.987	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
OBSCN	84033	genome.wustl.edu	37	1	228560700	228560700	+	Nonstop_Mutation	SNP	T	T	C	rs512253	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	228560700	228560700	T	C	SNP	OBSCN	ENST00000441106	human	ensembl	57_37b	+1	known	nonstop	c.6070	p.*2024R	0.011	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	
OR2AG2	338755	genome.wustl.edu	37	11	6789772	6789772	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6789772	6789772	T	A	SNP	OR2AG2	NM_001004490	human	genbank	57_37b	-1	provisional	missense	c.417	p.R139S	0.004	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PCDHA13	56136	genome.wustl.edu	37	5	140263636	140263636	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140263636	140263636	C	T	SNP	PCDHA13	NM_018904	human	genbank	57_37b	+1	reviewed	missense	c.1783	p.R595C	0.193	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PHF16	9767	genome.wustl.edu	37	X	46887478	46887478	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	46887478	46887478	T	C	SNP	PHF16	NM_001077445	human	genbank	57_37b	+1	reviewed	silent	c.660	p.C220	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	HMMPfam_EPL1,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PRG4	10216	genome.wustl.edu	37	1	186277245	186277245	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	186277245	186277245	C	A	SNP	PRG4	NM_005807	human	genbank	57_37b	+1	reviewed	silent	c.2394	p.A798	0.093	NULL	HMMSmart_SM00201,HMMPfam_Somatomedin_B,superfamily_Somatomedin B domain,PatternScan_SMB_1,superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120,PatternScan_HEMOPEXIN	-	no_errors
PRX	57716	genome.wustl.edu	37	19	40901124	40901124	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	40901124	40901124	C	A	SNP	PRX	NM_181882	human	genbank	57_37b	-1	reviewed	missense	c.3135	p.L1045F	0.310	NULL	HMMPfam_PDZ,superfamily_PDZ domain-like,HMMSmart_SM00228	-	no_errors
RB1	5925	genome.wustl.edu	37	13	49033889	49033890	+	Frame_Shift_Ins	INS	-	-	TAGAACA	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	49033889	49033890	-	TAGAACA	INS	RB1	NM_000321	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.2026_2027	p.I679fs	1.000:1.000	HMMPfam_RB_B,superfamily_Cyclin-like,HMMSmart_SM00385	HMMPfam_RB_A,superfamily_Cyclin-like,HMMPfam_RB_B,HMMSmart_SM00385,HMMPfam_Rb_C	-	no_errors
RGSL1	353299	genome.wustl.edu	37	1	182517904	182517904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	182517904	182517904	G	A	SNP	RGSL1	NM_001137669	human	genbank	57_37b	+1	validated	missense	c.2878	p.V960I	0.043	superfamily_Regulator of G-protein signaling RGS	superfamily_Regulator of G-protein signaling RGS	-	no_errors
SARS2	54938	genome.wustl.edu	37	19	39421129	39421129	+	Missense_Mutation	SNP	G	G	A	rs34050897	byCluster;byFrequency	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39421129	39421129	G	A	SNP	SARS2	NM_017827	human	genbank	57_37b	-1	reviewed	missense	c.248	p.S83L	0.160	superfamily_tRNA_binding_arm,HMMPfam_Seryl_tRNA_N	superfamily_tRNA_binding_arm,HMMPfam_Seryl_tRNA_N,superfamily_SSF55681,HMMPfam_tRNA-synt_2b	-	
THSD7A	221981	genome.wustl.edu	37	7	11464427	11464427	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	11464427	11464427	G	T	SNP	THSD7A	NM_015204	human	genbank	57_37b	-1	validated	missense	c.3279	p.D1093E	1.000	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	-	no_errors
TINAG	27283	genome.wustl.edu	37	6	54214608	54214608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	54214608	54214608	C	T	SNP	TINAG	NM_014464	human	genbank	57_37b	+1	validated	missense	c.994	p.R332W	1.000	superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1	HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases,HMMSmart_SM00645,HMMPfam_Peptidase_C1,PatternScan_THIOL_PROTEASE_ASN	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7576851	7576851	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7576851	7576851	A	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	splice_site	c.993+2	e8+2	1.000	-	-	-	no_errors
TTC18	118491	genome.wustl.edu	37	10	75114545	75114545	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	75114545	75114545	C	G	SNP	TTC18	NM_145170	human	genbank	57_37b	-1	validated	missense	c.10	p.V4L	0.003	NULL	HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
UBC	7316	genome.wustl.edu	37	12	125397945	125397945	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	125397945	125397945	G	C	SNP	UBC	NM_021009	human	genbank	57_37b	-1	validated	missense	c.373	p.Q125E	1.000	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	HMMSmart_SM00213,superfamily_Ubiquitin-like,HMMPfam_ubiquitin,PatternScan_UBIQUITIN_1	-	no_errors
USP27X	389856	genome.wustl.edu	37	X	49645348	49645348	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	49645348	49645348	A	T	SNP	USP27X	NM_001145073	human	genbank	57_37b	+1	provisional	missense	c.438	p.L146F	0.998	superfamily_SSF54001,HMMPfam_UCH	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ZC3H4	23211	genome.wustl.edu	37	19	47570199	47570199	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47570199	47570199	G	A	SNP	ZC3H4	NM_015168	human	genbank	57_37b	-1	validated	missense	c.3326	p.P1109L	0.932	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
ZNF841	284371	genome.wustl.edu	37	19	52569631	52569631	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A143-01A-11D-A10Y-09	TCGA-D8-A143-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	52569631	52569631	C	T	SNP	ZNF841	NM_001136499	human	genbank	57_37b	-1	validated	missense	c.1504	p.V502M	0.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,PatternScan_IG_MHC	-	no_errors
