Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACTB	60	genome.wustl.edu	37	7	5569207	5569207	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5569207	5569207	G	T	SNP	ACTB	NM_001101	human	genbank	57_37b	-1	reviewed	silent	c.82	p.R28	1.000	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268	superfamily_Actin-like ATPase domain,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_1,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
AHNAK	79026	genome.wustl.edu	37	11	62297977	62297977	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	62297977	62297977	T	C	SNP	AHNAK	NM_001620	human	genbank	57_37b	-1	validated	silent	c.3912	p.G1304	0.492	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors
AKAP8L	26993	genome.wustl.edu	37	19	15511970	15511970	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	15511970	15511970	G	C	SNP	AKAP8L	NM_014371	human	genbank	57_37b	-1	validated	silent	c.807	p.A269	0.003	NULL	HMMPfam_AKAP95	-	no_errors
ANK1	286	genome.wustl.edu	37	8	41582042	41582042	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41582042	41582042	G	A	SNP	ANK1	NM_001142446	human	genbank	57_37b	-1	reviewed	missense	c.742	p.H248Y	1.000	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,HMMSmart_ZU5,HMMSmart_DEATH,superfamily_DEATH_like,HMMPfam_Death	-	no_errors
ANK3	288	genome.wustl.edu	37	10	61946501	61946501	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	61946501	61946501	C	G	SNP	ANK3	NM_020987	human	genbank	57_37b	-1	reviewed	missense	c.2057	p.R686T	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,HMMPfam_ZU5,HMMSmart_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
ARRB2	409	genome.wustl.edu	37	17	4621248	4621248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4621248	4621248	C	T	SNP	ARRB2	NM_004313	human	genbank	57_37b	+1	reviewed	missense	c.551	p.S184L	0.991	superfamily_E set domains	superfamily_E set domains,HMMPfam_Arrestin_N,PatternScan_ARRESTINS,HMMPfam_Arrestin_C	-	no_errors
ATP1A1	476	genome.wustl.edu	37	1	116933404	116933404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	116933404	116933404	G	A	SNP	ATP1A1	NM_000701	human	genbank	57_37b	+1	reviewed	missense	c.1223	p.G408D	1.000	superfamily_Calcium ATPase transmembrane domain M,superfamily_HAD-like,HMMPfam_Hydrolase,superfamily_Metal cation-transporting ATPase ATP-binding domain N	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
C11orf85	283129	genome.wustl.edu	37	11	64722223	64722228	+	Splice_Site	DEL	CCCTAC	CCCTAC	-	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	CCCTAC	CCCTAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64722223	64722228	CCCTAC	-	DEL	C11orf85	NM_001037225	human	genbank	57_37b	-1	predicted	splice_site_del	c.147+1_147+1	e2+1	0.369:0.552:0.586:0.878:0.996:1.000	-	-	(deletion:intron[64717903,64722228])	no_errors
C11orf85	283129	genome.wustl.edu	37	11	64722223	64722228	+	Splice_Site	DEL	CCCTAC	CCCTAC	-	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	CCCTAC	CCCTAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64722223	64722228	CCCTAC	-	DEL	C11orf85	NM_001037225	human	genbank	57_37b	-1	predicted	splice_site_del	c.147+1_147+1	e2+1	0.369:0.552:0.586:0.878:0.996:1.000	-	-	(deletion:intron[64717903,64722228])	no_errors
EFHA2	286097	genome.wustl.edu	37	8	16961987	16961987	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	16961987	16961987	G	C	SNP	EFHA2	NM_181723	human	genbank	57_37b	+1	validated	missense	c.1072	p.E358Q	1.000	superfamily_SSF47473	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
ENSG00000228637	0	genome.wustl.edu	37	10	42394522	42394522	+	RNA	SNP	G	G	C	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42394522	42394522	G	C	SNP	ENSG00000228637	ENST00000439345	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245549	0	genome.wustl.edu	37	1	16950820	16950820	+	RNA	SNP	G	G	A	rs41310373	byCluster	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16950820	16950820	G	A	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.999	-	-	-	
EPN1	29924	genome.wustl.edu	37	19	56206663	56206663	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56206663	56206663	C	T	SNP	EPN1	NM_001130071	human	genbank	57_37b	+1	validated	silent	c.1930	p.L644	1.000	NULL	superfamily_ENTH/VHS domain,HMMPfam_ENTH,HMMSmart_SM00273,HMMPfam_UIM,HMMSmart_SM00726	-	no_errors
FGFBP2	83888	genome.wustl.edu	37	4	15964689	15964689	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	15964689	15964689	G	T	SNP	FGFBP2	NM_031950	human	genbank	57_37b	-1	reviewed	missense	c.64	p.P22T	0.162	HMMPfam_FGF-BP1	HMMPfam_FGF-BP1	-	no_errors
FLG	2312	genome.wustl.edu	37	1	152278409	152278409	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152278409	152278409	A	T	SNP	FLG	NM_002016	human	genbank	57_37b	-1	reviewed	missense	c.8953	p.S2985T	0.002	HMMPfam_Filaggrin	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
HAUS6	54801	genome.wustl.edu	37	9	19096691	19096691	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	19096691	19096691	G	C	SNP	HAUS6	NM_017645	human	genbank	57_37b	-1	provisional	missense	c.205	p.L69V	0.991	NULL	NULL	-	no_errors
HLA-DRB6	3128	genome.wustl.edu	37	6	32522679	32522679	+	RNA	SNP	G	G	C	rs112103446	byCluster;by1000genomes	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32522679	32522679	G	C	SNP	HLA-DRB6	NR_001298	human	genbank	57_37b	-1	provisional	rna	NULL	NULL	1.000	-	-	-	
ISLR	3671	genome.wustl.edu	37	15	74468237	74468237	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	74468237	74468237	G	A	SNP	ISLR	NM_005545	human	genbank	57_37b	+1	validated	silent	c.1038	p.T346	0.000	superfamily_SSF48726	HMMSmart_LRRNT,superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
KANK2	25959	genome.wustl.edu	37	19	11277272	11277272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	11277272	11277272	C	T	SNP	KANK2	NM_001136191	human	genbank	57_37b	-1	validated	missense	c.2518	p.D840N	0.985	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
KIAA1210	57481	genome.wustl.edu	37	X	118284280	118284280	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	118284280	118284280	G	A	SNP	KIAA1210	NM_020721	human	genbank	57_37b	-1	validated	missense	c.263	p.P88L	0.000	NULL	NULL	-	no_errors
LAMB2	3913	genome.wustl.edu	37	3	49159432	49159432	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49159432	49159432	C	T	SNP	LAMB2	NM_002292	human	genbank	57_37b	-1	reviewed	missense	c.4868	p.G1623D	0.816	NULL	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
LMTK3	114783	genome.wustl.edu	37	19	49014822	49014822	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	49014822	49014822	G	A	SNP	LMTK3	NM_001080434	human	genbank	57_37b	-1	provisional	silent	c.99	p.P33	0.889	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LOC442421	442421	genome.wustl.edu	37	9	66500810	66500810	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	66500810	66500810	G	A	SNP	LOC442421	NR_024496	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.950	-	-	-	no_errors
LOC732391	0	genome.wustl.edu	37	17	15468937	15468937	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15468937	15468937	C	T	SNP	LOC732391	XM_001722159	human	genbank	57_37b	-1	model	nonsense	c.642	p.W214*	1.000	NULL	NULL	-	no_errors
LOC732391	0	genome.wustl.edu	37	17	15468937	15468937	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	15468937	15468937	C	T	SNP	LOC732391	XM_001722159	human	genbank	57_37b	-1	model	nonsense	c.642	p.W214*	1.000	NULL	NULL	-	no_errors
MGA	23269	genome.wustl.edu	37	15	42002989	42002989	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42002989	42002989	G	-	DEL	MGA	NM_001080541	human	genbank	57_37b	+1	validated	frame_shift_del	c.2526	p.G843fs	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	(deletion:cds_exon[42002889,42003547])	no_errors
MGA	23269	genome.wustl.edu	37	15	42002989	42002989	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42002989	42002989	G	-	DEL	MGA	NM_001080541	human	genbank	57_37b	+1	validated	frame_shift_del	c.2526	p.G843fs	1.000	NULL	superfamily_p53-like transcription factors,HMMSmart_SM00425,HMMPfam_T-box,PatternScan_TBOX_2,HMMPfam_HLH,superfamily_HLH helix-loop-helix DNA-binding domain,HMMSmart_SM00353	(deletion:cds_exon[42002889,42003547])	no_errors
MTRR	4552	genome.wustl.edu	37	5	7889262	7889262	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	7889262	7889262	C	G	SNP	MTRR	NM_024010	human	genbank	57_37b	+1	reviewed	missense	c.1282	p.L428V	1.000	superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1	superfamily_Flavoproteins,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,HMMPfam_FAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain,HMMPfam_NAD_binding_1	-	no_errors
OR10K1	391109	genome.wustl.edu	37	1	158436273	158436273	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158436273	158436273	A	T	SNP	OR10K1	NM_001004473	human	genbank	57_37b	+1	provisional	missense	c.922	p.T308S	0.009	NULL	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR6B2	389090	genome.wustl.edu	37	2	240969576	240969576	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	240969576	240969576	G	A	SNP	OR6B2	NM_001005853	human	genbank	57_37b	-1	provisional	missense	c.271	p.R91C	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PCDH15	65217	genome.wustl.edu	37	10	56077174	56077174	+	Nonsense_Mutation	SNP	G	G	A	rs111033260	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	56077174	56077174	G	A	SNP	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	nonsense	c.748	p.R250*	0.980	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	
PCDH15	65217	genome.wustl.edu	37	10	56077174	56077174	+	Nonsense_Mutation	SNP	G	G	A	rs111033260	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	56077174	56077174	G	A	SNP	PCDH15	NM_001142763	human	genbank	57_37b	-1	reviewed	nonsense	c.748	p.R250*	0.980	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	
PDZD8	118987	genome.wustl.edu	37	10	119078457	119078457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	119078457	119078457	C	T	SNP	PDZD8	NM_173791	human	genbank	57_37b	-1	provisional	missense	c.1024	p.E342K	1.000	NULL	PatternScan_ZF_DAG_PE_1,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_SSF57889,HMMPfam_C1_1,HMMSmart_C1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-11A-33D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLEKHG6	55200	genome.wustl.edu	37	12	6426507	6426507	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6426507	6426507	C	T	SNP	PLEKHG6	NM_001144856	human	genbank	57_37b	+1	validated	silent	c.795	p.L265	0.868	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,HMMPfam_PH,superfamily_PH domain-like,HMMSmart_SM00233	-	no_errors
SEZ6	124925	genome.wustl.edu	37	17	27296863	27296863	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	27296863	27296863	G	A	SNP	SEZ6	NM_178860	human	genbank	57_37b	-1	validated	silent	c.966	p.V322	1.000	superfamily_Spermadhesin CUB domain	superfamily_Spermadhesin CUB domain,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042	-	no_errors
SNTB2	6645	genome.wustl.edu	37	16	69294160	69294160	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	69294160	69294160	A	G	SNP	SNTB2	NM_006750	human	genbank	57_37b	+1	reviewed	silent	c.1002	p.E334	1.000	HMMPfam_PH,HMMSmart_SM00233	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,HMMPfam_PH	-	no_errors
TIPIN	54962	genome.wustl.edu	37	15	66629421	66629421	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	66629421	66629421	C	G	SNP	TIPIN	NM_017858	human	genbank	57_37b	-1	validated	missense	c.781	p.D261H	0.003	NULL	HMMPfam_Swi3	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578524	7578524	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7578524	7578524	G	C	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.406	p.Q136E	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TSHZ2	128553	genome.wustl.edu	37	20	51871700	51871700	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	51871700	51871700	G	A	SNP	TSHZ2	NM_173485	human	genbank	57_37b	+1	validated	missense	c.1703	p.R568Q	0.970	NULL	PatternScan_HOMEOBOX_1,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_HOX,HMMPfam_Homeobox,HMMPfam_zf-C2H2	-	no_errors
TUBA3C	7278	genome.wustl.edu	37	13	19751640	19751640	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	19751640	19751640	G	A	SNP	TUBA3C	NM_006001	human	genbank	57_37b	-1	reviewed	silent	c.483	p.Y161	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
ZNF540	163255	genome.wustl.edu	37	19	38104051	38104051	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A14Y-01A-21D-A12B-09	TCGA-E2-A14Y-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	38104051	38104051	G	A	SNP	ZNF540	NM_152606	human	genbank	57_37b	+1	validated	missense	c.1870	p.E624K	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
