Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAMTS9	56999	genome.wustl.edu	37	3	64666931	64666931	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	64666931	64666931	G	A	SNP	ADAMTS9	NM_182920	human	genbank	57_37b	-1	reviewed	missense	c.625	p.R209C	0.952	NULL	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1,HMMPfam_GON"	-	no_errors
ANKRD34C	390616	genome.wustl.edu	37	15	79585975	79585975	+	Missense_Mutation	SNP	C	C	T	rs79441127	byCluster;by1000genomes	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	79585975	79585975	C	T	SNP	ANKRD34C	XM_002343327	human	genbank	57_37b	+1	model	missense	c.349	p.R117C	0.836	superfamily_Ankyrin repeat,HMMPfam_Ank	HMMSmart_SM00248,HMMPfam_Ank,superfamily_Ankyrin repeat	-	
C12orf40	283461	genome.wustl.edu	37	12	40044140	40044140	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	40044140	40044140	T	G	SNP	C12orf40	NM_001031748	human	genbank	57_37b	+1	validated	missense	c.670	p.F224V	0.346	NULL	NULL	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140952286	140952286	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140952286	140952286	G	A	SNP	CACNA1B	NM_000718	human	genbank	57_37b	+1	validated	silent	c.4071	p.T1357	0.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
CAT	847	genome.wustl.edu	37	11	34492955	34492955	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	34492955	34492955	C	T	SNP	CAT	NM_001752	human	genbank	57_37b	+1	reviewed	missense	c.1559	p.A520V	0.021	NULL	superfamily_Catalase_N,HMMPfam_Catalase,PatternScan_CATALASE_2,PatternScan_CATALASE_1,HMMPfam_Catalase-rel	-	no_errors
CBFB	865	genome.wustl.edu	37	16	67070600	67070601	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67070600	67070601	GA	-	DEL	CBFB	NM_022845	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.224_225	p.E76fs	1.000:1.000	HMMPfam_CBF_beta,superfamily_CBF_beta	HMMPfam_CBF_beta,superfamily_CBF_beta	(deletion:cds_exon[67070542,67070658])	no_errors
CCDC112	153733	genome.wustl.edu	37	5	114620509	114620509	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	114620509	114620509	G	A	SNP	CCDC112	NM_001040440	human	genbank	57_37b	-1	validated	missense	c.214	p.R72C	0.952	NULL	NULL	-	no_errors
DBH	1621	genome.wustl.edu	37	9	136508616	136508616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	136508616	136508616	G	A	SNP	DBH	NM_000787	human	genbank	57_37b	+1	reviewed	missense	c.826	p.V276I	0.017	superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen	HMMSmart_DoH,HMMPfam_DOMON,superfamily_PHM_PNGase_F,HMMPfam_Cu2_monooxygen,PatternScan_CU2_MONOOXYGENASE_1,HMMPfam_Cu2_monoox_C,PatternScan_CU2_MONOOXYGENASE_2	-	no_errors
ENSG00000237029	0	genome.wustl.edu	37	8	86556497	86556497	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	86556497	86556497	G	A	SNP	ENSG00000237029	ENST00000456858	human	ensembl	57_37b	-1	known	missense	c.203	p.P68L	0.005	NULL	superfamily_Ribonuclease H-like,HMMSmart_SM00479,HMMPfam_Exonuc_X-T	-	no_errors
ENSG00000244793	0	genome.wustl.edu	37	4	17488508	17488508	+	RNA	DEL	C	C	-	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	17488508	17488508	C	-	DEL	ENSG00000244793	ENST00000501943	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	(deletion:rna[17488289,17488741])	no_errors
EPHA5	2044	genome.wustl.edu	37	4	66201815	66201815	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	66201815	66201815	C	T	SNP	EPHA5	NM_004439	human	genbank	57_37b	-1	reviewed	missense	c.2687	p.R896H	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_Galactose-binding domain-like,HMMPfam_Ephrin_lbd,HMMSmart_SM00615,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,PatternScan_EGF_2,HMMPfam_BmKX,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
FGF18	8817	genome.wustl.edu	37	5	170883731	170883731	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	170883731	170883731	G	T	SNP	FGF18	NM_003862	human	genbank	57_37b	+1	reviewed	missense	c.546	p.Q182H	0.973	NULL	superfamily_Cytok_IL1_like,HMMSmart_FGF,HMMPfam_FGF,PatternScan_HBGF_FGF	-	no_errors
GABRB2	2561	genome.wustl.edu	37	5	160753392	160753392	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160753392	160753392	C	A	SNP	GABRB2	NM_021911	human	genbank	57_37b	-1	reviewed	missense	c.1174	p.D392Y	1.000	superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
KCNQ3	3786	genome.wustl.edu	37	8	133141532	133141532	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133141532	133141532	T	C	SNP	KCNQ3	NM_004519	human	genbank	57_37b	-1	reviewed	missense	c.2596	p.T866A	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
MAPKBP1	23005	genome.wustl.edu	37	15	42115928	42115928	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	42115928	42115928	C	T	SNP	MAPKBP1	NM_001128608	human	genbank	57_37b	+1	validated	silent	c.3900	p.I1300	0.995	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_PTS_HPR_SER	-	no_errors
MTMR12	54545	genome.wustl.edu	37	5	32233993	32233993	+	Silent	SNP	G	G	C	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	32233993	32233993	G	C	SNP	MTMR12	NM_001040446	human	genbank	57_37b	-1	reviewed	silent	c.1560	p.T520	0.995	superfamily_(Phosphotyrosine protein) phosphatases II	superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related	-	no_errors
MUT	4594	genome.wustl.edu	37	6	49416584	49416584	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	49416584	49416584	T	C	SNP	MUT	NM_000255	human	genbank	57_37b	-1	reviewed	missense	c.1389	p.I463M	0.991	superfamily_Cobalamin (vitamin B12)-dependent enzymes,HMMPfam_MM_CoA_mutase	superfamily_Cobalamin (vitamin B12)-dependent enzymes,HMMPfam_MM_CoA_mutase,PatternScan_METMALONYL_COA_MUTASE,superfamily_Cobalamin (vitamin B12)-binding domain,HMMPfam_B12-binding	-	no_errors
OPRD1	4985	genome.wustl.edu	37	1	29189416	29189416	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29189416	29189416	C	T	SNP	OPRD1	NM_000911	human	genbank	57_37b	+1	validated	missense	c.740	p.S247L	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1633	p.E545K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	
POTEF	728378	genome.wustl.edu	37	2	130832185	130832185	+	Missense_Mutation	SNP	G	G	A	rs62165870	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	130832185	130832185	G	A	SNP	POTEF	NM_001099771	human	genbank	57_37b	-1	validated	missense	c.2860	p.R954W	1.000	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	
RLTPR	146206	genome.wustl.edu	37	16	67685827	67685827	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67685827	67685827	C	T	SNP	RLTPR	NM_001013838	human	genbank	57_37b	+1	provisional	silent	c.2592	p.D864	0.968	NULL	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
SYCP1	6847	genome.wustl.edu	37	1	115454161	115454161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	115454161	115454161	C	T	SNP	SYCP1	NM_003176	human	genbank	57_37b	+1	validated	missense	c.1487	p.S496L	0.953	HMMPfam_SCP-1	HMMPfam_SCP-1	-	no_errors
TLL2	7093	genome.wustl.edu	37	10	98129947	98129947	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	98129947	98129947	C	T	SNP	TLL2	NM_012465	human	genbank	57_37b	-1	reviewed	missense	c.2788	p.G930S	1.000	superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB	PatternScan_EGF_1,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Astacin,PatternScan_ZINC_PROTEASE,superfamily_CUB,HMMPfam_CUB,HMMSmart_CUB,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF_CA,superfamily_SSF57196,PatternScan_EGF_2,HMMPfam_EGF	-	no_errors
TM2D3	80213	genome.wustl.edu	37	15	102192502	102192502	+	Silent	SNP	G	G	A	rs1127963	by1000genomes	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	102192502	102192502	G	A	SNP	TM2D3	NM_078474	human	genbank	57_37b	-1	reviewed	silent	c.63	p.L21	0.050	NULL	HMMPfam_TM2	-	
TRMT5	57570	genome.wustl.edu	37	14	61444282	61444282	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	61444282	61444282	G	A	SNP	TRMT5	NM_020810	human	genbank	57_37b	-1	validated	nonsense	c.742	p.R248*	1.000	superfamily_SSF53335,HMMPfam_Met_10	superfamily_SSF53335,HMMPfam_Met_10	-	no_errors
TRMT5	57570	genome.wustl.edu	37	14	61444282	61444282	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	61444282	61444282	G	A	SNP	TRMT5	NM_020810	human	genbank	57_37b	-1	validated	nonsense	c.742	p.R248*	1.000	superfamily_SSF53335,HMMPfam_Met_10	superfamily_SSF53335,HMMPfam_Met_10	-	no_errors
UBE2CBP	90025	genome.wustl.edu	37	6	83667047	83667047	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	83667047	83667047	C	T	SNP	UBE2CBP	NM_198920	human	genbank	57_37b	-1	provisional	missense	c.1133	p.R378H	0.000	HMMPfam_DUF2351	HMMPfam_DUF2351	-	no_errors
ZNF41	7592	genome.wustl.edu	37	X	47326822	47326822	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A153-01A-12D-A12B-09	TCGA-E2-A153-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	47326822	47326822	C	A	SNP	ZNF41	NM_007130	human	genbank	57_37b	-1	reviewed	missense	c.59	p.G20V	0.002	superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
