Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ADAM19	8728	genome.wustl.edu	37	5	156945842	156945842	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	156945842	156945842	C	G	SNP	ADAM19	NM_033274	human	genbank	57_37b	-1	reviewed	missense	c.655	p.D219H	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),PatternScan_DISINTEGRIN_1,HMMSmart_SM00608,HMMPfam_ADAM_CR,HMMPfam_EGF_2,PatternScan_EGF_2"	-	no_errors
ANO2	57101	genome.wustl.edu	37	12	5936961	5936961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	5936961	5936961	G	A	SNP	ANO2	NM_020373	human	genbank	57_37b	-1	validated	missense	c.854	p.A285V	0.097	NULL	HMMPfam_DUF590	-	no_errors
APLNR	187	genome.wustl.edu	37	11	57003857	57003857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57003857	57003857	C	T	SNP	APLNR	NM_005161	human	genbank	57_37b	-1	reviewed	missense	c.622	p.V208M	0.013	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
BCLAF1	9774	genome.wustl.edu	37	6	136599544	136599544	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	136599544	136599544	G	A	SNP	BCLAF1	NM_014739	human	genbank	57_37b	-1	reviewed	nonsense	c.475	p.R159*	1.000	NULL	NULL	-	no_errors
CAMK1G	57172	genome.wustl.edu	37	1	209785340	209785340	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	209785340	209785340	A	C	SNP	CAMK1G	NM_020439	human	genbank	57_37b	+1	reviewed	missense	c.1119	p.L373F	0.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CD34	947	genome.wustl.edu	37	1	208062812	208062812	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	208062812	208062812	G	T	SNP	CD34	NM_001025109	human	genbank	57_37b	-1	validated	missense	c.752	p.T251K	0.829	HMMPfam_CD34_antigen	HMMPfam_CD34_antigen	-	no_errors
CEP78	84131	genome.wustl.edu	37	9	80856675	80856675	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	80856675	80856675	T	C	SNP	CEP78	NM_001098802	human	genbank	57_37b	+1	validated	missense	c.563	p.L188P	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67644796	67644796	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67644796	67644796	G	T	SNP	CTCF	NM_006565	human	genbank	57_37b	+1	reviewed	nonsense	c.61	p.E21*	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DAK	26007	genome.wustl.edu	37	11	61105416	61105416	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	61105416	61105416	T	A	SNP	DAK	NM_015533	human	genbank	57_37b	+1	reviewed	missense	c.7	p.S3T	0.974	NULL	superfamily_DAK1/DegV-like,HMMPfam_Dak1,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain,HMMPfam_Dak2	-	no_errors
DSP	1832	genome.wustl.edu	37	6	7583485	7583485	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	7583485	7583485	G	T	SNP	DSP	NM_004415	human	genbank	57_37b	+1	reviewed	missense	c.5990	p.G1997V	1.000	superfamily_Plakin repeat	superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Prefoldin,superfamily_tRNA-binding arm,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
ENSG00000234719	0	genome.wustl.edu	37	16	12021332	12021332	+	Silent	SNP	G	G	A	rs256390	byCluster;by2Hit2Allele	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	12021332	12021332	G	A	SNP	ENSG00000234719	ENST00000399147	human	ensembl	57_37b	-1	known	silent	c.1041	p.P347	0.001	NULL	HMMPfam_NPIP	-	
ENSG00000245089	0	genome.wustl.edu	37	2	37502892	37502892	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	37502892	37502892	A	C	SNP	ENSG00000245089	ENST00000499241	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.020	-	-	-	no_errors
FREM2	341640	genome.wustl.edu	37	13	39266455	39266455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	39266455	39266455	C	T	SNP	FREM2	NM_207361	human	genbank	57_37b	+1	reviewed	silent	c.4974	p.I1658	0.997	NULL	HMMSmart_SM00237,HMMPfam_Calx-beta	-	no_errors
HDLBP	3069	genome.wustl.edu	37	2	242202328	242202328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242202328	242202328	G	A	SNP	HDLBP	NM_005336	human	genbank	57_37b	-1	validated	missense	c.248	p.P83L	1.000	NULL	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	-	no_errors
HSF1	3297	genome.wustl.edu	37	8	145535048	145535048	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145535048	145535048	C	G	SNP	HSF1	NM_005526	human	genbank	57_37b	+1	reviewed	missense	c.606	p.I202M	1.000	HMMPfam_HSF_DNA-bind	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00415,HMMPfam_HSF_DNA-bind,PatternScan_HSF_DOMAIN,HMMPfam_Vert_HS_TF"	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	11984840	11984856	+	Frame_Shift_Del	DEL	CAGTTAAAGTAGGTGAT	CAGTTAAAGTAGGTGAT	-	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	CAGTTAAAGTAGGTGAT	CAGTTAAAGTAGGTGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	11984840	11984856	CAGTTAAAGTAGGTGAT	-	DEL	MAP2K4	NM_003010	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.386_393	p.A129fs	1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[11984673,11984847], intron[11984848,11998891])	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56168483	56168483	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56168483	56168483	G	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.1439	p.R480fs	1.000	superfamily_SSF57850,HMMSmart_RING	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56168468,56168549])	no_errors
NCOR1	9611	genome.wustl.edu	37	17	16068342	16068352	+	Frame_Shift_Del	DEL	CGATCTACACG	CGATCTACACG	-	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	CGATCTACACG	CGATCTACACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	16068342	16068352	CGATCTACACG	-	DEL	NCOR1	NM_006311	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.569_559	p.V188fs	1.000:1.000:1.000:1.000:1.000:0.956:1.000:1.000:1.000:1.000:1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	(deletion:cds_exon[16068293,16068475])	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218	human	genbank	57_37b	+1	reviewed	missense	c.1624	p.E542K	1.000	superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
ProSAPiP1	9762	genome.wustl.edu	37	20	3147744	3147744	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	3147744	3147744	G	A	SNP	ProSAPiP1	NM_014731	human	genbank	57_37b	-1	validated	silent	c.66	p.A22	0.786	NULL	HMMPfam_Fez1	-	no_errors
RGS14	10636	genome.wustl.edu	37	5	176795135	176795135	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176795135	176795135	G	T	SNP	RGS14	ENST00000425155	human	ensembl	57_37b	+1	known	silent	c.27	p.A9	0.002	NULL	superfamily_SSF54236,HMMPfam_RBD,HMMSmart_RBD,HMMPfam_GoLoco,HMMSmart_GoLoco	-	no_errors
SGK269	79834	genome.wustl.edu	37	15	77406833	77406833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	77406833	77406833	G	A	SNP	SGK269	NM_024776	human	genbank	57_37b	-1	validated	missense	c.4906	p.R1636W	0.882	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
TCEB3	6924	genome.wustl.edu	37	1	24078169	24078170	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	24078169	24078170	-	C	INS	TCEB3	NM_003198	human	genbank	57_37b	+1	reviewed	frame_shift_ins	c.1152_1153	p.K385fs	0.000:0.464	NULL	superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70,HMMPfam_TFIIS,HMMSmart_SM00509,HMMPfam_Elongin_A	-	no_errors
TRIM71	131405	genome.wustl.edu	37	3	32933232	32933232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	32933232	32933232	G	A	SNP	TRIM71	NM_001039111	human	genbank	57_37b	+1	provisional	missense	c.2536	p.G846S	1.000	superfamily_SSF101898,HMMPfam_NHL	HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_Filamin,HMMSmart_IG_FLMN,superfamily_Ig_E-set,superfamily_SSF101898,HMMPfam_NHL	-	no_errors
UBA7	7318	genome.wustl.edu	37	3	49843342	49843342	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	49843342	49843342	T	G	SNP	UBA7	NM_003335	human	genbank	57_37b	-1	reviewed	missense	c.2897	p.H966P	0.000	HMMPfam_UBA_e1_C	PatternScan_UBIQUITIN_ACTIVAT_1,superfamily_MoeB,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors
ZFP28	140612	genome.wustl.edu	37	19	57050515	57050515	+	Missense_Mutation	SNP	C	C	G	rs7258088	byCluster;by1000genomes	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57050515	57050515	C	G	SNP	ZFP28	NM_020828	human	genbank	57_37b	+1	provisional	missense	c.128	p.A43G	0.015	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	
ZNF215	7762	genome.wustl.edu	37	11	6964815	6964815	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	6964815	6964815	G	T	SNP	ZNF215	NM_013250	human	genbank	57_37b	+1	validated	nonsense	c.655	p.E219*	0.009	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMSmart_SM00349	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
