Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ALOX12B	242	genome.wustl.edu	37	17	7989371	7989371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7989371	7989371	C	T	SNP	ALOX12B	NM_001139	human	genbank	57_37b	-1	reviewed	missense	c.315	p.M105I	0.947	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors
ALOX12B	242	genome.wustl.edu	37	17	7989371	7989371	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7989371	7989371	C	T	SNP	ALOX12B	NM_001139	human	genbank	57_37b	-1	reviewed	missense	c.315	p.M105I	0.947	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase,superfamily_Lipoxygenase,HMMPfam_Lipoxygenase,PatternScan_LIPOXYGENASE_1,PatternScan_LIPOXYGENASE_2	-	no_errors
AMICA1	120425	genome.wustl.edu	37	11	118081378	118081378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118081378	118081378	C	T	SNP	AMICA1	NM_001098526	human	genbank	57_37b	-1	validated	missense	c.248	p.R83H	1.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
AMICA1	120425	genome.wustl.edu	37	11	118081378	118081378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	118081378	118081378	C	T	SNP	AMICA1	NM_001098526	human	genbank	57_37b	-1	validated	missense	c.248	p.R83H	1.000	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
ATAD2B	54454	genome.wustl.edu	37	2	24118722	24118722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24118722	24118722	C	A	SNP	ATAD2B	NM_017552	human	genbank	57_37b	-1	validated	missense	c.335	p.R112L	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
ATAD2B	54454	genome.wustl.edu	37	2	24118722	24118722	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	24118722	24118722	C	A	SNP	ATAD2B	NM_017552	human	genbank	57_37b	-1	validated	missense	c.335	p.R112L	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
ATF5	22809	genome.wustl.edu	37	19	50436338	50436338	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50436338	50436338	C	T	SNP	ATF5	NM_012068	human	genbank	57_37b	+1	validated	missense	c.838	p.R280C	0.002	NULL	HMMPfam_bZIP_1,HMMSmart_BRLZ	-	no_errors
AZGP1	563	genome.wustl.edu	37	7	99573626	99573626	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	99573626	99573626	A	G	SNP	AZGP1	NM_001185	human	genbank	57_37b	-1	validated	silent	c.18	p.P6	0.646	NULL	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407,PatternScan_IG_MHC	-	no_errors
BCAT1	586	genome.wustl.edu	37	12	24982785	24982785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	24982785	24982785	C	T	SNP	BCAT1	NM_005504	human	genbank	57_37b	-1	reviewed	missense	c.1091	p.R364H	0.987	superfamily_Aminotrans_IV,HMMPfam_Aminotran_4	superfamily_Aminotrans_IV,HMMPfam_Aminotran_4,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors
BCAT1	586	genome.wustl.edu	37	12	24982785	24982785	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	24982785	24982785	C	T	SNP	BCAT1	NM_005504	human	genbank	57_37b	-1	reviewed	missense	c.1091	p.R364H	0.987	superfamily_Aminotrans_IV,HMMPfam_Aminotran_4	superfamily_Aminotrans_IV,HMMPfam_Aminotran_4,PatternScan_AA_TRANSFER_CLASS_4	-	no_errors
BCL2L11	10018	genome.wustl.edu	37	2	111907761	111907761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	111907761	111907761	C	T	SNP	BCL2L11	ENST00000452033	human	ensembl	57_37b	+1	known	missense	c.136	p.P46S	0.000	NULL	HMMPfam_Bclx_interact	-	no_errors
BCL2L11	10018	genome.wustl.edu	37	2	111907761	111907761	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	111907761	111907761	C	T	SNP	BCL2L11	ENST00000452033	human	ensembl	57_37b	+1	known	missense	c.136	p.P46S	0.000	NULL	HMMPfam_Bclx_interact	-	no_errors
C6orf142	90523	genome.wustl.edu	37	6	53883886	53883886	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	53883886	53883886	G	T	SNP	C6orf142	NM_138569	human	genbank	57_37b	+1	validated	silent	c.60	p.L20	0.793	NULL	NULL	-	no_errors
C6orf142	90523	genome.wustl.edu	37	6	53883886	53883886	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	53883886	53883886	G	T	SNP	C6orf142	NM_138569	human	genbank	57_37b	+1	validated	silent	c.60	p.L20	0.793	NULL	NULL	-	no_errors
CCNB1	891	genome.wustl.edu	37	5	68470891	68470891	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	68470891	68470891	G	T	SNP	CCNB1	NM_031966	human	genbank	57_37b	+1	reviewed	missense	c.893	p.G298V	0.999	superfamily_Cyclin_like,HMMPfam_Cyclin_N	superfamily_Cyclin_like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_CYCLIN,HMMPfam_Cyclin_C	-	no_errors
CCNB1	891	genome.wustl.edu	37	5	68470891	68470891	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	68470891	68470891	G	T	SNP	CCNB1	NM_031966	human	genbank	57_37b	+1	reviewed	missense	c.893	p.G298V	0.999	superfamily_Cyclin_like,HMMPfam_Cyclin_N	superfamily_Cyclin_like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_CYCLIN,HMMPfam_Cyclin_C	-	no_errors
CDC42BPG	55561	genome.wustl.edu	37	11	64600178	64600178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	64600178	64600178	C	T	SNP	CDC42BPG	NM_017525	human	genbank	57_37b	-1	validated	missense	c.2903	p.R968H	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C,HMMPfam_DMPK_coil,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_Cysteine-rich domain,HMMPfam_C1_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00036,HMMPfam_CNH,HMMPfam_PBD	-	no_errors
CDH9	1007	genome.wustl.edu	37	5	26906161	26906161	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	26906161	26906161	C	T	SNP	CDH9	NM_016279	human	genbank	57_37b	-1	reviewed	missense	c.718	p.D240N	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
COL4A1	1282	genome.wustl.edu	37	13	110850853	110850853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	110850853	110850853	G	A	SNP	COL4A1	NM_001845	human	genbank	57_37b	-1	reviewed	missense	c.1246	p.P416S	0.913	NULL	HMMPfam_Collagen,superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	-	no_errors
CRTAP	10491	genome.wustl.edu	37	3	33175699	33175699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33175699	33175699	C	T	SNP	CRTAP	NM_006371	human	genbank	57_37b	+1	reviewed	missense	c.1094	p.T365I	1.000	NULL	NULL	-	no_errors
CRTAP	10491	genome.wustl.edu	37	3	33175699	33175699	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	33175699	33175699	C	T	SNP	CRTAP	NM_006371	human	genbank	57_37b	+1	reviewed	missense	c.1094	p.T365I	1.000	NULL	NULL	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34191137	34191137	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34191137	34191137	T	G	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	missense	c.2388	p.R796S	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
CTNNAL1	8727	genome.wustl.edu	37	9	111735100	111735100	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	111735100	111735100	G	T	SNP	CTNNAL1	NM_003798	human	genbank	57_37b	-1	provisional	missense	c.1202	p.A401E	1.000	superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
CTNNAL1	8727	genome.wustl.edu	37	9	111735100	111735100	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	111735100	111735100	G	T	SNP	CTNNAL1	NM_003798	human	genbank	57_37b	-1	provisional	missense	c.1202	p.A401E	1.000	superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	-	no_errors
DMD	1756	genome.wustl.edu	37	X	32591673	32591673	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	32591673	32591673	T	G	SNP	DMD	NM_004006	human	genbank	57_37b	-1	reviewed	missense	c.1786	p.M596L	1.000	superfamily_Spectrin repeat,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,HMMPfam_Spectrin,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_t-snare proteins,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_EF-hand,HMMPfam_efhand_1,HMMPfam_efhand_2,HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,superfamily_Prefoldin	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13759060	13759060	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13759060	13759060	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.10314	p.L3438	0.005	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13759060	13759060	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13759060	13759060	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.10314	p.L3438	0.005	NULL	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DOT1L	84444	genome.wustl.edu	37	19	2213589	2213589	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2213589	2213589	C	G	SNP	DOT1L	NM_032482	human	genbank	57_37b	+1	validated	missense	c.1609	p.Q537E	1.000	NULL	superfamily_SSF53335,HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
DOT1L	84444	genome.wustl.edu	37	19	2213589	2213589	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	2213589	2213589	C	G	SNP	DOT1L	NM_032482	human	genbank	57_37b	+1	validated	missense	c.1609	p.Q537E	1.000	NULL	superfamily_SSF53335,HMMPfam_DOT1,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
DSCAM	1826	genome.wustl.edu	37	21	41719610	41719610	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41719610	41719610	C	T	SNP	DSCAM	NM_001389	human	genbank	57_37b	-1	validated	silent	c.1197	p.Q399	0.996	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
DSCAM	1826	genome.wustl.edu	37	21	41719610	41719610	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	41719610	41719610	C	T	SNP	DSCAM	NM_001389	human	genbank	57_37b	-1	validated	silent	c.1197	p.Q399	0.996	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
EIF3H	8667	genome.wustl.edu	37	8	117671073	117671073	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	117671073	117671073	C	A	SNP	EIF3H	NM_003756	human	genbank	57_37b	-1	validated	nonsense	c.436	p.E146*	1.000	HMMPfam_Mov34,HMMSmart_SM00232	HMMPfam_Mov34,HMMSmart_SM00232	-	no_errors
EIF3H	8667	genome.wustl.edu	37	8	117671073	117671073	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	117671073	117671073	C	A	SNP	EIF3H	NM_003756	human	genbank	57_37b	-1	validated	nonsense	c.436	p.E146*	1.000	HMMPfam_Mov34,HMMSmart_SM00232	HMMPfam_Mov34,HMMSmart_SM00232	-	no_errors
ENSG00000196094	0	genome.wustl.edu	37	12	129298777	129298777	+	Missense_Mutation	SNP	G	G	A	rs111933142	byCluster	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	129298777	129298777	G	A	SNP	ENSG00000196094	ENST00000354633	human	ensembl	57_37b	-1	known	missense	c.79	p.R27W	0.091	NULL	NULL	-	
ENSG00000228443	0	genome.wustl.edu	37	16	953546	953546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	953546	953546	G	T	SNP	ENSG00000228443	ENST00000444707	human	ensembl	57_37b	-1	known	missense	c.520	p.P174T	0.661	NULL	NULL	-	no_errors
ENSG00000228637	0	genome.wustl.edu	37	10	42396409	42396409	+	RNA	SNP	G	G	A	rs74214517	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42396409	42396409	G	A	SNP	ENSG00000228637	ENST00000439345	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000228637	0	genome.wustl.edu	37	10	42396424	42396424	+	RNA	SNP	G	G	C	rs36154183	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42396424	42396424	G	C	SNP	ENSG00000228637	ENST00000439345	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-	
ENSG00000246966	0	genome.wustl.edu	37	12	70932079	70932079	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70932079	70932079	T	C	SNP	ENSG00000246966	ENST00000501222	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
ENSG00000246966	0	genome.wustl.edu	37	12	70932079	70932079	+	RNA	SNP	T	T	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	70932079	70932079	T	C	SNP	ENSG00000246966	ENST00000501222	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors
ESRRG	2104	genome.wustl.edu	37	1	216680202	216680202	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216680202	216680202	C	G	SNP	ESRRG	NR_024099	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
ESRRG	2104	genome.wustl.edu	37	1	216680202	216680202	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216680202	216680202	C	G	SNP	ESRRG	NR_024099	human	genbank	57_37b	-1	validated	rna	NULL	NULL	1.000	-	-	-	no_errors
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	123258034	123258034	A	T	SNP	FGFR2	NM_022970	human	genbank	57_37b	-1	reviewed	missense	c.1650	p.N550K	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FGFR2	2263	genome.wustl.edu	37	10	123258034	123258034	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	123258034	123258034	A	T	SNP	FGFR2	NM_022970	human	genbank	57_37b	-1	reviewed	missense	c.1650	p.N550K	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,HMMPfam_I-set,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240370374	240370374	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	240370374	240370374	G	A	SNP	FMN2	NM_020066	human	genbank	57_37b	+1	validated	silent	c.2262	p.V754	0.000	NULL	HMMSmart_FH2,HMMPfam_Drf_FH1,superfamily_FH2_actin_bd,HMMPfam_FH2	-	no_errors
FN1	2335	genome.wustl.edu	37	2	216288147	216288147	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216288147	216288147	C	A	SNP	FN1	NM_212482	human	genbank	57_37b	-1	reviewed	missense	c.1319	p.R440I	0.999	superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
FN1	2335	genome.wustl.edu	37	2	216288147	216288147	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216288147	216288147	C	A	SNP	FN1	NM_212482	human	genbank	57_37b	-1	reviewed	missense	c.1319	p.R440I	0.999	superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
GCN1L1	10985	genome.wustl.edu	37	12	120602272	120602272	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120602272	120602272	C	A	SNP	GCN1L1	NM_006836	human	genbank	57_37b	-1	validated	silent	c.1716	p.V572	0.963	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
GCN1L1	10985	genome.wustl.edu	37	12	120602272	120602272	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	120602272	120602272	C	A	SNP	GCN1L1	NM_006836	human	genbank	57_37b	-1	validated	silent	c.1716	p.V572	0.963	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
GNAS	2778	genome.wustl.edu	37	20	57484421	57484421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	57484421	57484421	G	A	SNP	GNAS	NM_080425	human	genbank	57_37b	+1	reviewed	missense	c.2531	p.R844H	1.000	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors
HRNR	388697	genome.wustl.edu	37	1	152193787	152193787	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	152193787	152193787	G	C	SNP	HRNR	NM_001009931	human	genbank	57_37b	-1	validated	missense	c.318	p.H106Q	0.067	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_SVS_QK	-	no_errors
IPO13	9670	genome.wustl.edu	37	1	44426575	44426575	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44426575	44426575	G	T	SNP	IPO13	NM_014652	human	genbank	57_37b	+1	reviewed	missense	c.2137	p.V713F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
IPO13	9670	genome.wustl.edu	37	1	44426575	44426575	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44426575	44426575	G	T	SNP	IPO13	NM_014652	human	genbank	57_37b	+1	reviewed	missense	c.2137	p.V713F	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
KDR	3791	genome.wustl.edu	37	4	55955083	55955083	+	Silent	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	55955083	55955083	T	A	SNP	KDR	NM_002253	human	genbank	57_37b	-1	reviewed	silent	c.3462	p.S1154	0.995	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
KIAA0427	9811	genome.wustl.edu	37	18	46284669	46284669	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	46284669	46284669	G	C	SNP	KIAA0427	NM_001142397	human	genbank	57_37b	+1	validated	missense	c.964	p.E322Q	0.660	NULL	superfamily_ARM-type_fold,HMMPfam_MIF4G,HMMSmart_MIF4G	-	no_errors
KLRC2	3822	genome.wustl.edu	37	12	10586464	10586466	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10586464	10586466	TTC	-	DEL	KLRC2	NM_002260	human	genbank	57_37b	-1	reviewed	in_frame_del	c.409_407	p.R136in_frame_del	0.001:0.009:0.008	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[10586390,10586541])	no_errors
KLRC2	3822	genome.wustl.edu	37	12	10586464	10586466	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10586464	10586466	TTC	-	DEL	KLRC2	NM_002260	human	genbank	57_37b	-1	reviewed	in_frame_del	c.409_407	p.R136in_frame_del	0.001:0.009:0.008	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	(deletion:cds_exon[10586390,10586541])	no_errors
KRT82	3888	genome.wustl.edu	37	12	52797575	52797575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52797575	52797575	C	T	SNP	KRT82	NM_033033	human	genbank	57_37b	-1	reviewed	missense	c.530	p.R177Q	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
KRT82	3888	genome.wustl.edu	37	12	52797575	52797575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	52797575	52797575	C	T	SNP	KRT82	NM_033033	human	genbank	57_37b	-1	reviewed	missense	c.530	p.R177Q	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
L3MBTL3	84456	genome.wustl.edu	37	6	130407393	130407393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	130407393	130407393	A	G	SNP	L3MBTL3	NM_032438	human	genbank	57_37b	+1	validated	missense	c.1516	p.K506E	1.000	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
L3MBTL3	84456	genome.wustl.edu	37	6	130407393	130407393	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	130407393	130407393	A	G	SNP	L3MBTL3	NM_032438	human	genbank	57_37b	+1	validated	missense	c.1516	p.K506E	1.000	HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
LGALS4	3960	genome.wustl.edu	37	19	39292540	39292540	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	39292540	39292540	C	T	SNP	LGALS4	NM_006149	human	genbank	57_37b	-1	reviewed	missense	c.836	p.R279H	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00276,HMMPfam_Gal-bind_lectin	-	no_errors
LOC100131251	0	genome.wustl.edu	37	19	1768998	1769006	+	Splice_Site	DEL	TGGTGGAGG	TGGTGGAGG	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	TGGTGGAGG	TGGTGGAGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	1768998	1769006	TGGTGGAGG	-	DEL	LOC100131251	XM_001719038	human	genbank	57_37b	-1	model	splice_site_del	c.603+2_603+1	e3+2	0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000	-	-	(deletion:intron[1768957,1769007])	no_errors
LOC440563	440563	genome.wustl.edu	37	1	13183591	13183591	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13183591	13183591	G	A	SNP	LOC440563	NM_001136561	human	genbank	57_37b	-1	validated	silent	c.282	p.N94	0.879	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
LOC440563	440563	genome.wustl.edu	37	1	13183591	13183591	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	13183591	13183591	G	A	SNP	LOC440563	NM_001136561	human	genbank	57_37b	-1	validated	silent	c.282	p.N94	0.879	superfamily_RNA-binding domain RBD	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
MAGI1	9223	genome.wustl.edu	37	3	65346921	65346921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	65346921	65346921	C	T	SNP	MAGI1	NM_001033057	human	genbank	57_37b	-1	reviewed	missense	c.3587	p.R1196K	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ	-	no_errors
MAGI1	9223	genome.wustl.edu	37	3	65346921	65346921	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	65346921	65346921	C	T	SNP	MAGI1	NM_001033057	human	genbank	57_37b	-1	reviewed	missense	c.3587	p.R1196K	1.000	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_GUANYLATE_KINASE_1,HMMPfam_Guanylate_kin,superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_PDZ	-	no_errors
MAZ	4150	genome.wustl.edu	37	16	29821425	29821425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29821425	29821425	C	T	SNP	MAZ	NM_002383	human	genbank	57_37b	+1	validated	missense	c.1307	p.A436V	0.930	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MAZ	4150	genome.wustl.edu	37	16	29821425	29821425	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29821425	29821425	C	T	SNP	MAZ	NM_002383	human	genbank	57_37b	+1	validated	missense	c.1307	p.A436V	0.930	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MBD1	4152	genome.wustl.edu	37	18	47802228	47802228	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47802228	47802228	G	A	SNP	MBD1	NM_015846	human	genbank	57_37b	-1	reviewed	missense	c.640	p.R214C	1.000	HMMPfam_zf-CXXC	HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,HMMPfam_zf-CXXC	-	no_errors
MBD1	4152	genome.wustl.edu	37	18	47802228	47802228	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	47802228	47802228	G	A	SNP	MBD1	NM_015846	human	genbank	57_37b	-1	reviewed	missense	c.640	p.R214C	1.000	HMMPfam_zf-CXXC	HMMPfam_MBD,superfamily_DNA-binding domain,HMMSmart_SM00391,HMMPfam_zf-CXXC	-	no_errors
MLLT10	8028	genome.wustl.edu	37	10	21827779	21827779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21827779	21827779	C	T	SNP	MLLT10	NM_004641	human	genbank	57_37b	+1	validated	nonsense	c.178	p.Q60*	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
MLLT10	8028	genome.wustl.edu	37	10	21827779	21827779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21827779	21827779	C	T	SNP	MLLT10	NM_004641	human	genbank	57_37b	+1	validated	nonsense	c.178	p.Q60*	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
MLLT10	8028	genome.wustl.edu	37	10	21827779	21827779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21827779	21827779	C	T	SNP	MLLT10	NM_004641	human	genbank	57_37b	+1	validated	nonsense	c.178	p.Q60*	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
MLLT10	8028	genome.wustl.edu	37	10	21827779	21827779	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	21827779	21827779	C	T	SNP	MLLT10	NM_004641	human	genbank	57_37b	+1	validated	nonsense	c.178	p.Q60*	1.000	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1	-	no_errors
MYH10	4628	genome.wustl.edu	37	17	8415888	8415888	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8415888	8415888	C	G	SNP	MYH10	NM_005964	human	genbank	57_37b	-1	validated	missense	c.2740	p.A914P	1.000	NULL	superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MYH10	4628	genome.wustl.edu	37	17	8415888	8415888	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	8415888	8415888	C	G	SNP	MYH10	NM_005964	human	genbank	57_37b	-1	validated	missense	c.2740	p.A914P	1.000	NULL	superfamily_Myosin S1 fragment N-terminal domain,HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MYH8	4626	genome.wustl.edu	37	17	10304870	10304870	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	10304870	10304870	G	C	SNP	MYH8	NM_002472	human	genbank	57_37b	-1	reviewed	missense	c.2921	p.T974R	1.000	NULL	HMMPfam_Myosin_N,superfamily_SSF52540,HMMSmart_MYSc,HMMPfam_Myosin_head,HMMSmart_IQ,HMMPfam_IQ,HMMPfam_Myosin_tail_1	-	no_errors
NAALADL2	254827	genome.wustl.edu	37	3	175189546	175189546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	175189546	175189546	G	T	SNP	NAALADL2	NM_207015	human	genbank	57_37b	+1	validated	missense	c.1653	p.E551D	1.000	superfamily_Zn-dependent exopeptidases	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Transferrin receptor ectodomain C-terminal domain	-	no_errors
NAALADL2	254827	genome.wustl.edu	37	3	175189546	175189546	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	175189546	175189546	G	T	SNP	NAALADL2	NM_207015	human	genbank	57_37b	+1	validated	missense	c.1653	p.E551D	1.000	superfamily_Zn-dependent exopeptidases	superfamily_Transferrin receptor ectodomain apical domain,superfamily_Zn-dependent exopeptidases,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Transferrin receptor ectodomain C-terminal domain	-	no_errors
NFATC4	4776	genome.wustl.edu	37	14	24845738	24845738	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24845738	24845738	C	-	DEL	NFATC4	NM_001136022	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2484	p.P829fs	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG	(deletion:cds_exon[24845500,24846149])	no_errors
NFATC4	4776	genome.wustl.edu	37	14	24845738	24845738	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24845738	24845738	C	-	DEL	NFATC4	NM_001136022	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2484	p.P829fs	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG	(deletion:cds_exon[24845500,24846149])	no_errors
NFATC4	4776	genome.wustl.edu	37	14	24845738	24845738	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24845738	24845738	C	-	DEL	NFATC4	NM_001136022	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2484	p.P829fs	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG	(deletion:cds_exon[24845500,24846149])	no_errors
NFATC4	4776	genome.wustl.edu	37	14	24845738	24845738	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24845738	24845738	C	-	DEL	NFATC4	NM_001136022	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.2484	p.P829fs	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMPfam_RHD,HMMSmart_IPT,superfamily_Ig_E-set,HMMPfam_TIG	(deletion:cds_exon[24845500,24846149])	no_errors
NOTCH4	4855	genome.wustl.edu	37	6	32191659	32191661	+	In_Frame_Del	DEL	AGC	AGC	-	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	AGC	AGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	32191659	32191661	AGC	-	DEL	NOTCH4	NM_004557	human	genbank	57_37b	-1	reviewed	in_frame_del	c.47_45	p.L16in_frame_del	0.003:0.005:0.005	NULL	HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_NODP,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	(deletion:cds_exon[32191633,32191705])	no_errors
NUP155	9631	genome.wustl.edu	37	5	37349297	37349298	+	Frame_Shift_Del	DEL	GT	GT	-	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	37349297	37349298	GT	-	DEL	NUP155	NM_153485	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.880_879	p.R294fs	1.000:0.972	HMMPfam_Nucleoporin	HMMPfam_Nucleoporin	(deletion:cds_exon[37349274,37349347])	no_errors
OR51E2	81285	genome.wustl.edu	37	11	4703745	4703745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4703745	4703745	G	C	SNP	OR51E2	NM_030774	human	genbank	57_37b	-1	validated	missense	c.197	p.A66G	0.998	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR51E2	81285	genome.wustl.edu	37	11	4703745	4703745	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	4703745	4703745	G	C	SNP	OR51E2	NM_030774	human	genbank	57_37b	-1	validated	missense	c.197	p.A66G	0.998	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR8D1	283159	genome.wustl.edu	37	11	124180566	124180566	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124180566	124180566	C	T	SNP	OR8D1	NM_001002917	human	genbank	57_37b	-1	provisional	missense	c.97	p.G33R	0.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3R3	8503	genome.wustl.edu	37	1	46512262	46512262	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46512262	46512262	A	C	SNP	PIK3R3	NM_001114172	human	genbank	57_37b	-1	validated	missense	c.977	p.L326R	1.000	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
PIK3R3	8503	genome.wustl.edu	37	1	46512262	46512262	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	46512262	46512262	A	C	SNP	PIK3R3	NM_001114172	human	genbank	57_37b	-1	validated	missense	c.977	p.L326R	1.000	NULL	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
PIWIL2	55124	genome.wustl.edu	37	8	22146119	22146120	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22146119	22146120	-	A	INS	PIWIL2	NM_001135721	human	genbank	57_37b	+1	validated	frame_shift_ins	c.926_927	p.I311fs	1.000:0.988	superfamily_PAZ domain	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
PIWIL2	55124	genome.wustl.edu	37	8	22146119	22146120	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22146119	22146120	-	A	INS	PIWIL2	NM_001135721	human	genbank	57_37b	+1	validated	frame_shift_ins	c.926_927	p.I311fs	1.000:0.988	superfamily_PAZ domain	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	-	no_errors
PWP2	5822	genome.wustl.edu	37	21	45540847	45540847	+	Silent	SNP	C	C	T	rs114475684	by1000genomes	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45540847	45540847	C	T	SNP	PWP2	NM_005049	human	genbank	57_37b	+1	validated	silent	c.1500	p.H500	0.184	superfamily_WD40_like,HMMSmart_WD40,HMMPfam_WD40	superfamily_Peptidase_S9A_N,HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMPfam_PWP2	-	
RNU6-42	0	genome.wustl.edu	37	3	196511870	196511870	+	RNA	SNP	C	C	T	rs10440165	byCluster	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	196511870	196511870	C	T	SNP	RNU6-42	ENST00000384165	human	ensembl	57_37b	-1	known	rna	NULL	NULL	0.000	-	-	-	
SEZ6L2	26470	genome.wustl.edu	37	16	29884037	29884037	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	29884037	29884037	C	T	SNP	SEZ6L2	NM_012410	human	genbank	57_37b	-1	validated	missense	c.2306	p.R769Q	1.000	NULL	superfamily_CUB,HMMSmart_CUB,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB	-	no_errors
SLC16A1	6566	genome.wustl.edu	37	1	113456766	113456766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	113456766	113456766	C	T	SNP	SLC16A1	NM_003051	human	genbank	57_37b	-1	reviewed	missense	c.1250	p.G417E	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
SLC16A1	6566	genome.wustl.edu	37	1	113456766	113456766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	113456766	113456766	C	T	SNP	SLC16A1	NM_003051	human	genbank	57_37b	-1	reviewed	missense	c.1250	p.G417E	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
SSX3	10214	genome.wustl.edu	37	X	48214616	48214616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48214616	48214616	C	A	SNP	SSX3	NM_021014	human	genbank	57_37b	-1	reviewed	missense	c.69	p.K23N	0.036	superfamily_Krueppel-associated_box,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB,HMMPfam_SSXRD	-	no_errors
SSX3	10214	genome.wustl.edu	37	X	48214616	48214616	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	48214616	48214616	C	A	SNP	SSX3	NM_021014	human	genbank	57_37b	-1	reviewed	missense	c.69	p.K23N	0.036	superfamily_Krueppel-associated_box,HMMSmart_KRAB	superfamily_Krueppel-associated_box,HMMSmart_KRAB,HMMPfam_KRAB,HMMPfam_SSXRD	-	no_errors
TIMP3	7078	genome.wustl.edu	37	22	33245467	33245467	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	33245467	33245467	G	A	SNP	TIMP3	NM_000362	human	genbank	57_37b	+1	reviewed	silent	c.150	p.K50	1.000	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like	HMMPfam_TIMP,PatternScan_TIMP,HMMSmart_SM00206,superfamily_TIMP-like	-	no_errors
TIMP3	7078	genome.wustl.edu	37	22	33245467	33245467	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	33245467	33245467	G	A	SNP	TIMP3	NM_000362	human	genbank	57_37b	+1	reviewed	silent	c.150	p.K50	1.000	HMMPfam_TIMP,HMMSmart_SM00206,superfamily_TIMP-like	HMMPfam_TIMP,PatternScan_TIMP,HMMSmart_SM00206,superfamily_TIMP-like	-	no_errors
TRAK1	22906	genome.wustl.edu	37	3	42230525	42230525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42230525	42230525	C	T	SNP	TRAK1	NM_001042646	human	genbank	57_37b	+1	validated	missense	c.599	p.S200L	0.993	HMMPfam_HAP1_N	HMMPfam_HAP1_N,PatternScan_HEMOPEXIN	-	no_errors
TRAK1	22906	genome.wustl.edu	37	3	42230525	42230525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	42230525	42230525	C	T	SNP	TRAK1	NM_001042646	human	genbank	57_37b	+1	validated	missense	c.599	p.S200L	0.993	HMMPfam_HAP1_N	HMMPfam_HAP1_N,PatternScan_HEMOPEXIN	-	no_errors
TRIP10	9322	genome.wustl.edu	37	19	6751237	6751237	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6751237	6751237	G	A	SNP	TRIP10	ENST00000420690	human	ensembl	57_37b	+1	known	missense	c.1682	p.R561Q	0.078	NULL	HMMPfam_FCH,HMMSmart_FCH	-	no_errors
TRIP10	9322	genome.wustl.edu	37	19	6751237	6751237	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	6751237	6751237	G	A	SNP	TRIP10	ENST00000420690	human	ensembl	57_37b	+1	known	missense	c.1682	p.R561Q	0.078	NULL	HMMPfam_FCH,HMMSmart_FCH	-	no_errors
ZNF675	171392	genome.wustl.edu	37	19	23837311	23837311	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23837311	23837311	T	A	SNP	ZNF675	NM_138330	human	genbank	57_37b	-1	validated	nonsense	c.424	p.K142*	0.319	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF675	171392	genome.wustl.edu	37	19	23837311	23837311	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23837311	23837311	T	A	SNP	ZNF675	NM_138330	human	genbank	57_37b	-1	validated	nonsense	c.424	p.K142*	0.319	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF675	171392	genome.wustl.edu	37	19	23837311	23837311	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23837311	23837311	T	A	SNP	ZNF675	NM_138330	human	genbank	57_37b	-1	validated	nonsense	c.424	p.K142*	0.319	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF675	171392	genome.wustl.edu	37	19	23837311	23837311	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23837311	23837311	T	A	SNP	ZNF675	NM_138330	human	genbank	57_37b	-1	validated	nonsense	c.424	p.K142*	0.319	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF829	374899	genome.wustl.edu	37	19	37382643	37382645	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37382643	37382645	CTT	-	DEL	ZNF829	NM_001037232	human	genbank	57_37b	-1	validated	in_frame_del	c.1050_1048	p.K350in_frame_del	0.992:1.000:1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[37382394,37383373])	no_errors
ZNF829	374899	genome.wustl.edu	37	19	37382643	37382645	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-11A-13D-A12Q-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	37382643	37382645	CTT	-	DEL	ZNF829	NM_001037232	human	genbank	57_37b	-1	validated	in_frame_del	c.1050_1048	p.K350in_frame_del	0.992:1.000:1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[37382394,37383373])	no_errors
ZSCAN2	54993	genome.wustl.edu	37	15	85164438	85164438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-01A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85164438	85164438	G	A	SNP	ZSCAN2	NM_181877	human	genbank	57_37b	+1	reviewed	missense	c.1012	p.E338K	0.726	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZSCAN2	54993	genome.wustl.edu	37	15	85164438	85164438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A15K-06A-11D-A12Q-09	TCGA-E2-A15K-10A-01D-A12Q-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	85164438	85164438	G	A	SNP	ZSCAN2	NM_181877	human	genbank	57_37b	+1	reviewed	missense	c.1012	p.E338K	0.726	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
