writing sdrf to CESC.merger.sdrf.txt

------------------------------------------------------------------
2012-11-04 08:20:03.661193
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/CESC/1970967/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/CESC/1970967/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-BI-A0VR-01.wig.txt
('', None)
0
de13afec9291a34f2dfd4c249a13c793
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-BI-A0VS-01.wig.txt
('', None)
0
927bea574db07202d3c23f02dee401d5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A0TN-01.wig.txt
('', None)
0
bb689efe68b7d4eb4af6ed0cebe1a539
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BE-01.wig.txt
('', None)
0
52ec555c267506d1e4cd05ea42266277
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BF-01.wig.txt
('', None)
0
91667d434aacc9ef7707646216774608
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BI-01.wig.txt
('', None)
0
105b941e23800a08faecb6e3e56d0ddb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BJ-01.wig.txt
('', None)
0
c642e5d7033b5bd6fc1440d35c752dc1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BK-01.wig.txt
('', None)
0
ab3d9bf810888d74b660e22c173959a6
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BL-01.wig.txt
('', None)
0
9ec088fed545bde643f0a8b88fe49c43
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BM-01.wig.txt
('', None)
0
fcbefaddc3f78df1dbedf79286eaeafb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1BN-01.wig.txt
('', None)
0
099c5dd4d81477691db282783004f281
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1M5-01.wig.txt
('', None)
0
2f7b77f8dbc3aa250012abd2ed716e73
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1M6-01.wig.txt
('', None)
0
c061cc4bf9f7515d723f638f67f5ca1e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1M7-01.wig.txt
('', None)
0
67c06ca2d3a31a3c6c0b6db47249725d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1M8-01.wig.txt
('', None)
0
21ea831c266cc0b916b8db9bcc4d7ed1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1M9-01.wig.txt
('', None)
0
0739642076c52968ff63d616a5efc530
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1ME-01.wig.txt
('', None)
0
cd13ca01e5e3e4fed7784c6bd92b3c51
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MF-01.wig.txt
('', None)
0
4cce9a623bfcc4b628829d28733a06b3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MH-01.wig.txt
('', None)
0
76be0ecbee65a7923d99e5cf78f88968
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MI-01.wig.txt
('', None)
0
944df2559f8df2d97860b03f7ac731f3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MJ-01.wig.txt
('', None)
0
d06a2b30b8c8e148a52ad251b39dba50
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MK-01.wig.txt
('', None)
0
ac178dd4c231072bac6b25f18b64ae41
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1ML-01.wig.txt
('', None)
0
748758203d7c23cfa28afa25a33e64b0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MN-01.wig.txt
('', None)
0
6d9df9c7cada8840ae510d8de37c901e
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MP-01.wig.txt
('', None)
0
dbd8b2e502d90dd819e1bfbf952608f8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-C5-A1MQ-01.wig.txt
('', None)
0
a3d771f9ade37b68b8cceb43f6a9b026
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-DR-A0ZL-01.wig.txt
('', None)
0
fb1194ab13536266ec9db8beffee6263
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-DR-A0ZM-01.wig.txt
('', None)
0
0296e791c147877036df34551bc5901a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-DS-A0VK-01.wig.txt
('', None)
0
742e149d2af309ff1d2673d149bd7dd1
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-DS-A0VL-01.wig.txt
('', None)
0
0cafa2401cde37976dce2c6c0c945a65
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-DS-A0VM-01.wig.txt
('', None)
0
362241b484fb5e6a3779be54907b321b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-DS-A0VN-01.wig.txt
('', None)
0
306764b39da8791ad4807ca4783047ae
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-EA-A1QT-01.wig.txt
('', None)
0
899da39577e21b482b1ab1bfa7b6b693
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-EX-A1H5-01.wig.txt
('', None)
0
350f201f570007d51830dbfaaa021392
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-FU-A23K-01.wig.txt
('', None)
0
bb3e8217e3f86d56c6654415a07106b7
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/cesc/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_CESC.IlluminaGA_DNASeq.Level_2.2.3.0/TCGA-FU-A23L-01.wig.txt
('', None)
0
2120c1233431d99631616613effba4ae
It is not in the dictionary
Make a softlink is done.


